Wall clock time and date at job start Mon Mar 30 2020 04:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 H 1.08997 * 109.47164 * 54.99449 * 3 2 1 5 5 O 1.42902 * 109.47046 * 294.99819 * 3 2 1 6 6 C 1.53000 * 109.47094 * 174.99988 * 3 2 1 7 7 C 1.50703 * 109.46923 * 184.99927 * 6 3 2 8 8 O 1.20824 * 119.99868 * 359.97438 * 7 6 3 9 9 O 1.34232 * 119.99981 * 180.02562 * 7 6 3 10 10 C 1.45193 * 117.00307 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47629 * 179.97438 * 10 9 7 12 12 C 1.50698 * 115.55091 * 294.88972 * 11 10 9 13 13 H 1.07995 * 120.00548 * 95.15680 * 12 11 10 14 14 C 1.37887 * 119.99607 * 274.88498 * 12 11 10 15 15 N 1.31512 * 119.99742 * 6.38500 * 14 12 11 16 16 Si 1.86792 * 120.00001 * 186.38825 * 14 12 11 17 17 H 1.48497 * 109.47138 * 89.99854 * 16 14 12 18 18 H 1.48507 * 109.46983 * 210.00016 * 16 14 12 19 19 H 1.48507 * 109.47143 * 329.99898 * 16 14 12 20 20 C 1.53001 * 117.49567 * 80.55078 * 11 10 9 21 21 C 1.52997 * 117.50058 * 149.21087 * 11 10 9 22 22 H 1.08996 * 109.46920 * 60.00375 * 1 2 3 23 23 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47487 * 300.00550 * 1 2 3 25 25 H 1.09002 * 109.47065 * 240.00206 * 2 1 3 26 26 H 1.08996 * 109.46920 * 119.99625 * 2 1 3 27 27 H 0.96706 * 113.99918 * 300.00621 * 5 3 2 28 28 H 1.09001 * 109.47341 * 64.99919 * 6 3 2 29 29 H 1.09000 * 109.47107 * 304.99491 * 6 3 2 30 30 H 1.09004 * 109.47351 * 59.98882 * 10 9 7 31 31 H 1.09010 * 109.46838 * 299.99816 * 10 9 7 32 32 H 0.97004 * 120.00151 * 179.97438 * 15 14 12 33 33 H 1.09003 * 117.50064 * 215.00337 * 20 11 10 34 34 H 1.08997 * 117.50444 * 0.02833 * 20 11 10 35 35 H 1.08997 * 117.50286 * 359.97438 * 21 11 10 36 36 H 1.09000 * 117.49777 * 144.98214 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6620 2.0814 -1.2211 6 6 3.5648 1.4444 0.1257 7 6 4.0569 2.8634 0.2492 8 8 3.2689 3.7793 0.2374 9 8 5.3707 3.1100 0.3713 10 6 5.7727 4.5004 0.4864 11 6 7.2949 4.5823 0.6165 12 6 7.8739 3.9743 1.8679 13 1 8.2400 2.9584 1.8554 14 6 7.9414 4.7172 3.0276 15 7 7.3884 5.9093 3.0780 16 14 8.8184 4.0303 4.5270 17 1 10.2499 4.4230 4.4863 18 1 8.1911 4.5725 5.7590 19 1 8.7113 2.5491 4.5278 20 6 8.1203 4.4765 -0.6674 21 6 7.9868 5.8229 0.0483 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0141 1.6541 -2.0140 28 1 4.0030 0.9836 -0.7596 29 1 3.8570 0.8801 1.0114 30 1 5.3086 4.9410 1.3688 31 1 5.4538 5.0455 -0.4022 32 1 7.4356 6.4318 3.8940 33 1 9.0821 3.9672 -0.6069 34 1 7.5789 4.3490 -1.6048 35 1 7.3576 6.5807 -0.4186 36 1 8.8606 6.1997 0.5799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849788631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:40 Heat of formation + Delta-G solvation = -150.825484 kcal Electronic energy + Delta-G solvation = -17606.299300 eV Core-core repulsion = 14669.100434 eV Total energy + Delta-G solvation = -2937.198866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.40953 -39.07944 -38.26348 -36.82156 -34.03750 -33.82287 -31.69029 -28.68580 -27.35143 -25.49478 -23.02233 -22.41677 -21.59650 -21.19462 -18.53891 -18.30338 -17.67558 -17.43489 -16.84915 -16.46484 -16.30886 -15.56679 -15.41307 -14.91172 -14.38855 -13.91976 -13.82660 -13.54045 -13.00058 -12.98985 -12.89928 -12.79497 -12.69177 -12.40518 -12.10524 -11.79563 -11.74108 -11.65002 -11.63329 -11.34361 -10.91684 -10.79194 -10.49993 -10.09108 -8.14718 -6.26455 1.33716 1.41892 1.42764 1.52892 1.86613 2.41896 3.14314 3.38589 3.54174 3.65016 3.78382 4.10674 4.14220 4.21374 4.36639 4.40181 4.47280 4.58471 4.65568 4.66176 4.85030 4.88601 4.94854 4.97209 5.13336 5.16647 5.31928 5.44130 5.45743 5.56739 5.73429 5.78017 6.34631 6.79306 6.90689 6.93120 7.42575 8.94402 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.028393 B = 0.005488 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.936060 B = 5101.259390 C = 5641.867167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.120 3.880 4 H 0.077 0.923 5 O -0.571 6.571 6 C -0.138 4.138 7 C 0.442 3.558 8 O -0.545 6.545 9 O -0.351 6.351 10 C 0.130 3.870 11 C 0.003 3.997 12 C -0.504 4.504 13 H 0.057 0.943 14 C 0.021 3.979 15 N -0.912 5.912 16 Si 0.955 3.045 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.175 4.175 21 C -0.150 4.150 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.385 0.615 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.962 -12.711 -6.891 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.061 3.939 4 H 0.095 0.905 5 O -0.378 6.378 6 C -0.176 4.176 7 C 0.287 3.713 8 O -0.436 6.436 9 O -0.267 6.267 10 C 0.056 3.944 11 C 0.003 3.997 12 C -0.542 4.542 13 H 0.076 0.924 14 C -0.179 4.179 15 N -0.550 5.550 16 Si 0.780 3.220 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.212 4.212 21 C -0.187 4.187 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.234 0.766 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.497 -11.861 -6.360 15.916 hybrid contribution 0.656 0.205 0.730 1.003 sum -7.841 -11.655 -5.630 15.134 Atomic orbital electron populations 1.21702 0.95165 1.02123 1.01724 1.22172 0.97024 0.94289 1.04728 1.21780 0.89907 0.94422 0.87807 0.90453 1.86685 1.76791 1.58201 1.16149 1.22385 0.98194 0.88458 1.08542 1.24669 0.80472 0.94324 0.71802 1.90636 1.57030 1.48636 1.47280 1.86518 1.26125 1.32021 1.82065 1.22429 0.96368 0.77536 0.98091 1.18896 0.87621 0.99922 0.93293 1.20647 1.40338 0.99049 0.94128 0.92444 1.25766 0.95615 0.95202 1.01320 1.70119 1.44031 1.12348 1.28455 0.85604 0.78824 0.78947 0.78599 1.19813 1.21265 1.18984 1.23011 1.02074 1.00341 0.95803 1.22482 1.02301 0.90743 1.03191 0.92908 0.91131 0.93650 0.89161 0.89405 0.76635 0.84482 0.84999 0.94597 0.93851 0.93023 0.89384 0.89114 0.90639 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.81 71.98 0.71 -1.58 16 2 C -0.14 -2.05 5.61 30.60 0.17 -1.88 16 3 C 0.12 2.68 2.51 30.59 0.08 2.76 16 4 H 0.08 2.15 7.96 -2.39 -0.02 2.13 16 5 O -0.57 -14.32 12.11 -135.16 -1.64 -15.96 16 6 C -0.14 -3.23 5.49 29.85 0.16 -3.06 16 7 C 0.44 16.79 7.84 71.24 0.56 17.34 16 8 O -0.55 -24.59 15.17 27.04 0.41 -24.18 16 9 O -0.35 -15.46 10.16 -51.44 -0.52 -15.98 16 10 C 0.13 6.40 5.28 71.98 0.38 6.78 16 11 C 0.00 0.16 1.61 -52.93 -0.08 0.07 16 12 C -0.50 -27.67 8.77 25.60 0.22 -27.44 16 13 H 0.06 3.13 7.82 -2.91 -0.02 3.10 16 14 C 0.02 1.16 5.39 84.66 0.46 1.62 16 15 N -0.91 -52.81 12.93 21.45 0.28 -52.53 16 16 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 C -0.18 -7.41 9.96 30.62 0.30 -7.10 16 21 C -0.15 -7.01 9.43 30.62 0.29 -6.72 16 22 H 0.05 0.90 7.82 -2.39 -0.02 0.88 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 24 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.38 6.06 9.05 -74.05 -0.67 5.39 16 28 H 0.14 2.29 8.14 -2.39 -0.02 2.28 16 29 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 31 H 0.04 2.03 8.09 -2.38 -0.02 2.01 16 32 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -69.94 311.53 4.19 -65.75 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.39 Total: 16.87 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 3.25 Total: -19.21 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.28 Total: -52.53 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -1.75 Total: -56.12 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.94 4.19 -65.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849788631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.079 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds