Wall clock time and date at job start Mon Mar 30 2020 04:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46933 * 2 1 4 4 C 1.52997 * 109.47548 * 239.99882 * 2 1 3 5 5 C 1.52995 * 109.47221 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47550 * 59.99744 * 5 4 2 7 7 C 1.52997 * 109.47068 * 300.00350 * 6 5 4 8 8 O 1.42905 * 109.46781 * 299.99464 * 7 6 5 9 9 C 1.50697 * 109.47132 * 179.97438 * 7 6 5 10 10 O 1.21204 * 119.99996 * 264.99690 * 9 7 6 11 11 O 1.34317 * 119.99915 * 85.00050 * 9 7 6 12 12 C 1.34923 * 116.99588 * 180.02562 * 11 9 7 13 13 H 1.07991 * 120.00455 * 359.97438 * 12 11 9 14 14 C 1.38761 * 119.99617 * 179.97438 * 12 11 9 15 15 N 1.31437 * 119.99982 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99936 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46782 * 89.99940 * 16 14 12 18 18 H 1.48498 * 109.47243 * 209.99706 * 16 14 12 19 19 H 1.48498 * 109.47367 * 330.00395 * 16 14 12 20 20 C 1.52995 * 109.47221 * 59.99449 * 7 6 5 21 21 H 1.08996 * 109.47241 * 300.00517 * 1 2 3 22 22 H 1.09001 * 109.47160 * 60.00378 * 1 2 3 23 23 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46980 * 191.17776 * 3 2 1 25 25 H 1.08993 * 109.47241 * 311.17594 * 3 2 1 26 26 H 1.08996 * 109.47317 * 71.18135 * 3 2 1 27 27 H 1.09001 * 109.47102 * 59.99704 * 4 2 1 28 28 H 1.09002 * 109.46807 * 300.00014 * 4 2 1 29 29 H 1.09002 * 109.47102 * 299.99663 * 5 4 2 30 30 H 1.09001 * 109.47115 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.46984 * 59.99847 * 6 5 4 32 32 H 1.08992 * 109.47356 * 180.02562 * 6 5 4 33 33 H 0.96696 * 114.00316 * 300.00052 * 8 7 6 34 34 H 0.96998 * 120.00106 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47102 * 60.00337 * 20 7 6 36 36 H 1.09007 * 109.47332 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0796 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 8 4.0463 0.6251 1.2499 9 6 4.0708 -1.4330 2.4802 10 8 3.3751 -2.2611 3.0273 11 8 5.2886 -1.1490 2.9706 12 6 5.6766 -1.8216 4.0740 13 1 5.0172 -2.5500 4.5222 14 6 6.9231 -1.5775 4.6328 15 7 7.3009 -2.2323 5.7079 16 14 8.0639 -0.3181 3.8569 17 1 7.8092 1.0163 4.4567 18 1 9.4749 -0.7103 4.1033 19 1 7.8147 -0.2591 2.3942 20 6 2.0395 -0.7215 1.2493 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1116 1.4491 -0.1992 25 1 1.5232 2.0106 -0.7735 26 1 1.8485 1.8956 0.9727 27 1 1.6767 -0.2075 -2.1392 28 1 1.6767 -1.7489 -1.2491 29 1 3.9337 0.3058 -1.2486 30 1 3.9334 -1.2352 -2.1390 31 1 3.7159 -2.4708 0.0004 32 1 5.1695 -1.4432 0.0010 33 1 5.0103 0.7012 1.2502 34 1 8.1721 -2.0614 6.0988 35 1 1.6758 -1.7491 1.2491 36 1 1.6761 -0.2072 2.1391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850107369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:41 Heat of formation + Delta-G solvation = -148.323970 kcal Electronic energy + Delta-G solvation = -18822.327499 eV Core-core repulsion = 15885.237106 eV Total energy + Delta-G solvation = -2937.090392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40638 -38.57333 -35.61387 -35.38877 -32.59915 -32.30974 -30.05266 -27.06645 -26.36850 -25.81076 -23.17635 -21.54734 -19.75888 -18.56530 -18.05280 -17.11168 -16.01115 -15.68294 -14.72808 -14.60583 -14.41561 -14.15435 -13.86863 -13.51298 -12.84145 -12.52150 -12.49309 -12.38976 -12.02442 -11.81606 -11.69454 -11.54064 -11.26959 -10.94617 -10.87163 -10.55333 -10.47026 -10.28606 -10.25868 -10.06043 -9.84252 -9.72030 -8.80319 -8.70841 -6.39480 -4.15103 3.07422 3.21177 3.29640 3.33355 3.94286 4.21004 4.53883 4.73410 4.77501 4.98602 5.07343 5.17978 5.23469 5.40961 5.47497 5.56961 5.73037 5.75671 5.83124 5.95704 5.99828 6.04637 6.09227 6.14282 6.22249 6.29844 6.38651 6.44077 6.52475 6.57793 6.83105 7.69326 7.86093 8.01254 8.57964 8.98391 9.63467 10.69116 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038055 B = 0.007154 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.595285 B = 3913.019397 C = 4146.218966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.143 4.143 7 C 0.163 3.837 8 O -0.538 6.538 9 C 0.386 3.614 10 O -0.535 6.535 11 O -0.250 6.250 12 C -0.381 4.381 13 H 0.108 0.892 14 C 0.065 3.935 15 N -0.874 5.874 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.261 1.261 20 C -0.082 4.082 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.378 0.622 34 H 0.280 0.720 35 H 0.084 0.916 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 6.146 -14.625 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.181 4.181 7 C 0.121 3.879 8 O -0.345 6.345 9 C 0.231 3.769 10 O -0.430 6.430 11 O -0.159 6.159 12 C -0.457 4.457 13 H 0.126 0.874 14 C -0.138 4.138 15 N -0.513 5.513 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.119 4.119 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.227 0.773 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.985 6.023 -14.313 17.461 hybrid contribution 1.214 0.161 0.076 1.227 sum -6.770 6.184 -14.237 16.934 Atomic orbital electron populations 1.21861 0.94838 1.01539 1.01523 1.20494 0.94819 0.96469 0.94323 1.22106 1.03104 0.93815 1.00771 1.21615 0.95512 1.00254 0.97250 1.21521 0.95748 1.01372 0.96539 1.22176 1.01579 1.00297 0.94005 1.20868 0.95283 0.82074 0.89695 1.86659 1.27253 1.24277 1.96328 1.23915 0.81604 0.84128 0.87269 1.90592 1.57359 1.34649 1.60362 1.83472 1.31584 1.59164 1.41669 1.20643 1.02621 1.21097 1.01333 0.87432 1.24567 0.96496 0.97535 0.95248 1.69605 1.21505 1.40473 1.19740 0.86198 0.79042 0.80980 0.80536 1.19770 1.20800 1.18502 1.21479 0.90322 1.01866 0.98235 0.92650 0.92830 0.92828 0.89426 0.94477 0.92917 0.92049 0.92113 0.90693 0.91967 0.90511 0.90753 0.77299 0.91014 0.89784 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.45 37.16 0.31 -1.23 16 2 C -0.06 -0.77 0.77 -154.51 -0.12 -0.89 16 3 C -0.14 -1.78 7.12 37.16 0.26 -1.51 16 4 C -0.11 -1.22 4.73 -26.73 -0.13 -1.35 16 5 C -0.11 -1.34 5.59 -26.73 -0.15 -1.48 16 6 C -0.14 -2.11 4.90 -26.73 -0.13 -2.24 16 7 C 0.16 2.85 0.94 -91.78 -0.09 2.76 16 8 O -0.54 -8.66 8.69 -49.07 -0.43 -9.09 16 9 C 0.39 9.15 6.78 36.00 0.24 9.39 16 10 O -0.53 -14.39 15.33 -19.05 -0.29 -14.68 16 11 O -0.25 -6.52 8.01 -25.90 -0.21 -6.73 16 12 C -0.38 -11.38 10.10 30.93 0.31 -11.07 16 13 H 0.11 3.57 7.09 -52.49 -0.37 3.20 16 14 C 0.07 1.87 5.49 -17.53 -0.10 1.77 16 15 N -0.87 -25.95 13.96 55.48 0.77 -25.18 16 16 Si 0.91 21.11 28.62 -169.99 -4.86 16.24 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 20 C -0.08 -1.31 3.39 -26.73 -0.09 -1.40 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 1.14 3.79 -51.93 -0.20 0.94 16 25 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 26 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.86 5.95 -51.93 -0.31 0.55 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.38 5.51 8.64 45.56 0.39 5.90 16 34 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 1.38 7.87 -51.93 -0.41 0.97 16 36 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 LS Contribution 285.29 15.07 4.30 4.30 Total: -1.00 -32.08 285.29 -5.05 -37.13 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.67 Total: 5.24 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 0.34 Total: -7.23 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.77 Total: -25.18 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.93 Total: -30.50 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.86 Total: 16.24 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.08 -5.05 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850107369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.195 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds