Wall clock time and date at job start Mon Mar 30 2020 04:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46933 * 2 1 4 4 C 1.52997 * 109.47548 * 239.99882 * 2 1 3 5 5 C 1.52995 * 109.47221 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47550 * 59.99744 * 5 4 2 7 7 C 1.52997 * 109.47068 * 300.00350 * 6 5 4 8 8 O 1.42905 * 109.46781 * 299.99464 * 7 6 5 9 9 C 1.50697 * 109.47132 * 179.97438 * 7 6 5 10 10 O 1.21204 * 119.99996 * 264.99690 * 9 7 6 11 11 O 1.34317 * 119.99915 * 85.00050 * 9 7 6 12 12 C 1.34923 * 116.99588 * 180.02562 * 11 9 7 13 13 H 1.07991 * 120.00455 * 359.97438 * 12 11 9 14 14 C 1.38761 * 119.99617 * 179.97438 * 12 11 9 15 15 N 1.31437 * 119.99982 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99936 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46782 * 89.99940 * 16 14 12 18 18 H 1.48498 * 109.47243 * 209.99706 * 16 14 12 19 19 H 1.48498 * 109.47367 * 330.00395 * 16 14 12 20 20 C 1.52995 * 109.47221 * 59.99449 * 7 6 5 21 21 H 1.08996 * 109.47241 * 300.00517 * 1 2 3 22 22 H 1.09001 * 109.47160 * 60.00378 * 1 2 3 23 23 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46980 * 191.17776 * 3 2 1 25 25 H 1.08993 * 109.47241 * 311.17594 * 3 2 1 26 26 H 1.08996 * 109.47317 * 71.18135 * 3 2 1 27 27 H 1.09001 * 109.47102 * 59.99704 * 4 2 1 28 28 H 1.09002 * 109.46807 * 300.00014 * 4 2 1 29 29 H 1.09002 * 109.47102 * 299.99663 * 5 4 2 30 30 H 1.09001 * 109.47115 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.46984 * 59.99847 * 6 5 4 32 32 H 1.08992 * 109.47356 * 180.02562 * 6 5 4 33 33 H 0.96696 * 114.00316 * 300.00052 * 8 7 6 34 34 H 0.96998 * 120.00106 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47102 * 60.00337 * 20 7 6 36 36 H 1.09007 * 109.47332 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0796 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 8 4.0463 0.6251 1.2499 9 6 4.0708 -1.4330 2.4802 10 8 3.3751 -2.2611 3.0273 11 8 5.2886 -1.1490 2.9706 12 6 5.6766 -1.8216 4.0740 13 1 5.0172 -2.5500 4.5222 14 6 6.9231 -1.5775 4.6328 15 7 7.3009 -2.2323 5.7079 16 14 8.0639 -0.3181 3.8569 17 1 7.8092 1.0163 4.4567 18 1 9.4749 -0.7103 4.1033 19 1 7.8147 -0.2591 2.3942 20 6 2.0395 -0.7215 1.2493 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1116 1.4491 -0.1992 25 1 1.5232 2.0106 -0.7735 26 1 1.8485 1.8956 0.9727 27 1 1.6767 -0.2075 -2.1392 28 1 1.6767 -1.7489 -1.2491 29 1 3.9337 0.3058 -1.2486 30 1 3.9334 -1.2352 -2.1390 31 1 3.7159 -2.4708 0.0004 32 1 5.1695 -1.4432 0.0010 33 1 5.0103 0.7012 1.2502 34 1 8.1721 -2.0614 6.0988 35 1 1.6758 -1.7491 1.2491 36 1 1.6761 -0.2072 2.1391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850107369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:41 Heat of formation + Delta-G solvation = -169.985909 kcal Electronic energy + Delta-G solvation = -18823.266831 eV Core-core repulsion = 15885.237106 eV Total energy + Delta-G solvation = -2938.029724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.94209 -40.23178 -37.46698 -36.86585 -34.52990 -33.66393 -31.36088 -28.10463 -27.92818 -27.28985 -24.74980 -22.68643 -21.42102 -20.24689 -19.85141 -18.64804 -17.59131 -17.27006 -16.48007 -16.33499 -15.66048 -15.39948 -15.26552 -14.82106 -14.46038 -14.17306 -13.93854 -13.61050 -13.31161 -13.23591 -12.85301 -12.82244 -12.61287 -12.44794 -12.34478 -12.01987 -11.94005 -11.88022 -11.57401 -11.35676 -11.18909 -10.92235 -10.87311 -10.48296 -8.58943 -6.47027 1.20434 1.32474 1.48061 1.53906 2.19294 2.27109 2.85841 3.20634 3.57098 3.60608 3.90071 4.04932 4.08825 4.32409 4.39704 4.44609 4.56721 4.69802 4.77013 4.92196 4.96630 5.03141 5.09286 5.13193 5.15299 5.23647 5.32474 5.40667 5.45551 5.47099 5.56109 5.83472 5.86107 6.44614 6.59007 6.76566 7.48962 8.54114 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038055 B = 0.007154 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.595285 B = 3913.019397 C = 4146.218966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.107 4.107 6 C -0.140 4.140 7 C 0.174 3.826 8 O -0.531 6.531 9 C 0.381 3.619 10 O -0.575 6.575 11 O -0.249 6.249 12 C -0.413 4.413 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.239 1.239 20 C -0.083 4.083 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.387 0.613 34 H 0.290 0.710 35 H 0.072 0.928 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 8.286 -17.918 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.057 4.057 3 C -0.195 4.195 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.178 4.178 7 C 0.132 3.868 8 O -0.339 6.339 9 C 0.227 3.773 10 O -0.471 6.471 11 O -0.158 6.158 12 C -0.488 4.488 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.806 3.194 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.162 1.162 20 C -0.120 4.120 21 H 0.066 0.934 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.238 0.762 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.451 8.154 -17.608 20.785 hybrid contribution 0.927 -0.585 1.180 1.610 sum -6.524 7.568 -16.428 19.228 Atomic orbital electron populations 1.21856 0.93522 1.01950 1.02306 1.20508 0.95884 0.96259 0.93004 1.22069 1.03259 0.93690 1.00519 1.21646 0.95165 1.00498 0.97217 1.21534 0.96002 1.01611 0.95240 1.22212 1.01721 0.99961 0.93938 1.20994 0.95969 0.82355 0.87499 1.86685 1.28226 1.22929 1.96037 1.25671 0.80256 0.83234 0.88101 1.90566 1.58108 1.36543 1.61869 1.83485 1.32891 1.58901 1.40509 1.20300 1.03100 1.21969 1.03472 0.93129 1.25688 0.97776 0.99700 0.95399 1.69710 1.22656 1.42096 1.21202 0.85026 0.76387 0.77425 0.80558 1.18549 1.19153 1.16155 1.21542 0.89265 1.01560 0.99657 0.93402 0.90517 0.92686 0.89583 0.92176 0.94785 0.89299 0.92016 0.89784 0.89514 0.91355 0.90614 0.76239 0.89994 0.90946 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.45 71.98 0.61 -2.12 16 2 C -0.06 -1.29 0.77 -52.18 -0.04 -1.33 16 3 C -0.14 -3.08 7.12 71.98 0.51 -2.57 16 4 C -0.11 -2.01 4.73 30.59 0.14 -1.86 16 5 C -0.11 -2.07 5.59 30.59 0.17 -1.90 16 6 C -0.14 -3.90 4.90 30.59 0.15 -3.75 16 7 C 0.17 6.01 0.94 -11.54 -0.01 6.00 16 8 O -0.53 -16.19 8.69 -135.75 -1.18 -17.37 16 9 C 0.38 18.66 6.78 71.24 0.48 19.14 16 10 O -0.57 -32.83 15.33 20.79 0.32 -32.51 16 11 O -0.25 -13.28 8.01 19.73 0.16 -13.12 16 12 C -0.41 -25.82 10.10 67.95 0.69 -25.14 16 13 H 0.05 3.65 7.09 -2.92 -0.02 3.63 16 14 C 0.01 0.84 5.49 84.88 0.47 1.30 16 15 N -0.92 -56.00 13.96 21.63 0.30 -55.70 16 16 Si 0.99 42.76 28.62 68.60 1.96 44.72 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.24 -9.41 7.11 99.48 0.71 -8.70 16 20 C -0.08 -2.64 3.39 30.59 0.10 -2.54 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 1.93 3.79 -2.38 -0.01 1.93 16 25 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 26 H 0.03 0.87 8.09 -2.39 -0.02 0.85 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.53 5.95 -2.39 -0.01 1.52 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.39 10.34 8.64 -74.06 -0.64 9.70 16 34 H 0.29 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.07 2.45 7.87 -2.39 -0.02 2.43 16 36 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -74.01 285.29 5.27 -68.74 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.43 Total: 19.99 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.27 Total: -14.76 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.30 Total: -55.70 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -0.70 Total: -63.00 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.96 Total: 44.72 kcal Total: -74.01 5.27 -68.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850107369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.245 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds