Wall clock time and date at job start Mon Mar 30 2020 04:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47324 * 2 1 4 4 C 1.52997 * 109.47036 * 239.99744 * 2 1 3 5 5 C 1.52995 * 109.47185 * 300.00144 * 4 2 1 6 6 C 1.52992 * 109.47243 * 299.99602 * 5 4 2 7 7 C 1.53007 * 109.46982 * 60.00335 * 6 5 4 8 8 O 1.42903 * 109.46915 * 59.99780 * 7 6 5 9 9 C 1.50696 * 109.47093 * 179.97438 * 7 6 5 10 10 O 1.21212 * 119.99749 * 95.00025 * 9 7 6 11 11 O 1.34308 * 120.00217 * 274.99955 * 9 7 6 12 12 C 1.34922 * 117.00233 * 180.02562 * 11 9 7 13 13 H 1.08004 * 120.00029 * 0.02562 * 12 11 9 14 14 C 1.38760 * 120.00411 * 179.97438 * 12 11 9 15 15 N 1.31432 * 119.99949 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99693 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47347 * 89.99538 * 16 14 12 18 18 H 1.48500 * 109.47179 * 209.99784 * 16 14 12 19 19 H 1.48499 * 109.47148 * 329.99556 * 16 14 12 20 20 C 1.52995 * 109.46858 * 299.99900 * 7 6 5 21 21 H 1.09006 * 109.47396 * 288.82304 * 1 2 3 22 22 H 1.09001 * 109.46992 * 48.81463 * 1 2 3 23 23 H 1.09002 * 109.47223 * 168.82094 * 1 2 3 24 24 H 1.08996 * 109.47281 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.47058 * 300.00407 * 3 2 1 26 26 H 1.08998 * 109.46785 * 59.99961 * 3 2 1 27 27 H 1.09005 * 109.47050 * 60.00340 * 4 2 1 28 28 H 1.09004 * 109.47083 * 180.02562 * 4 2 1 29 29 H 1.08996 * 109.47209 * 60.00331 * 5 4 2 30 30 H 1.09003 * 109.47104 * 179.97438 * 5 4 2 31 31 H 1.09006 * 109.47014 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47614 * 300.00481 * 6 5 4 33 33 H 0.96696 * 114.00152 * 60.00094 * 8 7 6 34 34 H 0.97006 * 120.00088 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.47084 * 299.99829 * 20 7 6 36 36 H 1.09003 * 109.47104 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1637 -1.2491 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1637 1.2493 8 8 0.1009 -2.1637 1.2493 9 6 2.0318 -2.8745 2.4797 10 8 3.0445 -2.4958 3.0276 11 8 1.3569 -3.9275 2.9692 12 6 1.8598 -4.5179 4.0732 13 1 2.7661 -4.1396 4.5227 14 6 1.2122 -5.6106 4.6318 15 7 1.7025 -6.1861 5.7069 16 14 -0.3556 -6.2646 3.8548 17 1 -0.0137 -7.2978 2.8445 18 1 -1.2156 -6.8654 4.9058 19 1 -1.0838 -5.1504 3.1965 20 6 2.0399 -0.7213 1.2493 21 1 -0.3634 0.3316 0.9727 22 1 -0.3633 0.6767 -0.7734 23 1 -0.3634 -1.0082 -0.1992 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -0.2074 -2.1392 28 1 3.1300 -0.7217 -1.2490 29 1 0.4400 -2.1637 -1.2492 30 1 1.8929 -2.6775 -2.1394 31 1 1.6762 -3.9125 0.0002 32 1 3.1299 -2.8850 0.0000 33 1 -0.2924 -3.0471 1.2492 34 1 1.2500 -6.9502 6.0973 35 1 3.1300 -0.7213 1.2493 36 1 1.6770 -0.2075 2.1395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850107371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:44 Heat of formation + Delta-G solvation = -148.306017 kcal Electronic energy + Delta-G solvation = -18822.793066 eV Core-core repulsion = 15885.703452 eV Total energy + Delta-G solvation = -2937.089614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40570 -38.57317 -35.61010 -35.38683 -32.59931 -32.30989 -30.05057 -27.06572 -26.36901 -25.81056 -23.17588 -21.54757 -19.75694 -18.56346 -18.05254 -17.11108 -16.01064 -15.68058 -14.71541 -14.61006 -14.43024 -14.15429 -13.86062 -13.51347 -12.83979 -12.51923 -12.49294 -12.38669 -12.02472 -11.81661 -11.69164 -11.53971 -11.27084 -10.94765 -10.87130 -10.56126 -10.45855 -10.29145 -10.25421 -10.05125 -9.84228 -9.71898 -8.80238 -8.70848 -6.39431 -4.15070 3.07875 3.20940 3.28821 3.34311 3.94354 4.21111 4.54468 4.73389 4.77433 4.98692 5.07070 5.18003 5.23584 5.40934 5.47408 5.56887 5.73006 5.75661 5.83158 5.95671 5.99827 6.04583 6.09269 6.13998 6.22233 6.29823 6.38628 6.44119 6.52553 6.57843 6.83289 7.69395 7.86720 8.01261 8.58010 8.98445 9.63517 10.69141 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038053 B = 0.007154 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.648452 B = 3912.830683 C = 4145.883168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.143 4.143 7 C 0.163 3.837 8 O -0.538 6.538 9 C 0.386 3.614 10 O -0.535 6.535 11 O -0.250 6.250 12 C -0.381 4.381 13 H 0.108 0.892 14 C 0.065 3.935 15 N -0.874 5.874 16 Si 0.906 3.094 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.258 1.258 20 C -0.082 4.082 21 H 0.052 0.948 22 H 0.036 0.964 23 H 0.087 0.913 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.378 0.622 34 H 0.279 0.721 35 H 0.084 0.916 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.352 9.006 -14.617 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.181 4.181 7 C 0.121 3.879 8 O -0.345 6.345 9 C 0.231 3.769 10 O -0.430 6.430 11 O -0.159 6.159 12 C -0.457 4.457 13 H 0.126 0.874 14 C -0.138 4.138 15 N -0.513 5.513 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.182 1.182 20 C -0.119 4.119 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.106 0.894 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.227 0.773 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.028 9.569 -14.300 17.471 hybrid contribution -0.541 -1.110 0.067 1.236 sum -3.570 8.459 -14.234 16.938 Atomic orbital electron populations 1.22108 0.93649 1.03273 1.00769 1.20492 0.96777 0.94511 0.94319 1.21861 1.00799 0.95576 1.01523 1.21616 1.00369 0.95397 0.97249 1.21520 1.01778 0.95351 0.96539 1.22180 1.02174 0.99698 0.94014 1.20869 0.81799 0.95583 0.89682 1.86660 1.17540 1.33988 1.96319 1.23917 0.84324 0.81387 0.87294 1.90594 1.26026 1.65999 1.60359 1.83468 1.51108 1.39679 1.41624 1.20644 1.11487 1.12063 1.01497 0.87437 1.24564 0.98814 0.95249 0.95213 1.69605 1.40031 1.21920 1.19766 0.86215 0.82078 0.79521 0.79099 1.19935 1.20737 1.18237 1.21476 1.00977 0.91212 0.98233 0.92922 0.94482 0.89418 0.92828 0.92827 0.92653 0.92049 0.92108 0.90689 0.91963 0.90759 0.90501 0.77283 0.91015 0.89792 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 7.12 37.16 0.26 -1.52 16 2 C -0.06 -0.77 0.77 -154.51 -0.12 -0.89 16 3 C -0.14 -1.54 8.45 37.16 0.31 -1.23 16 4 C -0.11 -1.22 4.73 -26.74 -0.13 -1.35 16 5 C -0.11 -1.33 5.59 -26.74 -0.15 -1.48 16 6 C -0.14 -2.10 4.90 -26.73 -0.13 -2.23 16 7 C 0.16 2.85 0.94 -91.77 -0.09 2.76 16 8 O -0.54 -8.70 8.69 -49.12 -0.43 -9.13 16 9 C 0.39 9.14 6.78 36.00 0.24 9.39 16 10 O -0.54 -14.39 15.33 -19.05 -0.29 -14.68 16 11 O -0.25 -6.52 8.01 -25.88 -0.21 -6.73 16 12 C -0.38 -11.38 10.10 30.93 0.31 -11.06 16 13 H 0.11 3.57 7.09 -52.48 -0.37 3.20 16 14 C 0.07 1.87 5.49 -17.53 -0.10 1.77 16 15 N -0.87 -25.95 13.96 55.48 0.77 -25.18 16 16 Si 0.91 21.06 28.62 -169.99 -4.86 16.20 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.08 -1.31 3.40 -26.73 -0.09 -1.40 16 21 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 22 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 23 H 0.09 1.14 3.79 -51.93 -0.20 0.94 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.85 5.95 -51.93 -0.31 0.55 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.38 5.56 8.63 45.56 0.39 5.96 16 34 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 1.38 7.87 -51.93 -0.41 0.97 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 285.29 15.07 4.30 4.30 Total: -1.00 -32.08 285.29 -5.05 -37.14 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.67 Total: 5.31 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 0.34 Total: -7.23 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.77 Total: -25.18 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.93 Total: -30.54 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.08 -5.05 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850107371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.168 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds