Wall clock time and date at job start Mon Mar 30 2020 04:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47324 * 2 1 4 4 C 1.52997 * 109.47036 * 239.99744 * 2 1 3 5 5 C 1.52995 * 109.47185 * 300.00144 * 4 2 1 6 6 C 1.52992 * 109.47243 * 299.99602 * 5 4 2 7 7 C 1.53007 * 109.46982 * 60.00335 * 6 5 4 8 8 O 1.42903 * 109.46915 * 59.99780 * 7 6 5 9 9 C 1.50696 * 109.47093 * 179.97438 * 7 6 5 10 10 O 1.21212 * 119.99749 * 95.00025 * 9 7 6 11 11 O 1.34308 * 120.00217 * 274.99955 * 9 7 6 12 12 C 1.34922 * 117.00233 * 180.02562 * 11 9 7 13 13 H 1.08004 * 120.00029 * 0.02562 * 12 11 9 14 14 C 1.38760 * 120.00411 * 179.97438 * 12 11 9 15 15 N 1.31432 * 119.99949 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99693 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47347 * 89.99538 * 16 14 12 18 18 H 1.48500 * 109.47179 * 209.99784 * 16 14 12 19 19 H 1.48499 * 109.47148 * 329.99556 * 16 14 12 20 20 C 1.52995 * 109.46858 * 299.99900 * 7 6 5 21 21 H 1.09006 * 109.47396 * 288.82304 * 1 2 3 22 22 H 1.09001 * 109.46992 * 48.81463 * 1 2 3 23 23 H 1.09002 * 109.47223 * 168.82094 * 1 2 3 24 24 H 1.08996 * 109.47281 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.47058 * 300.00407 * 3 2 1 26 26 H 1.08998 * 109.46785 * 59.99961 * 3 2 1 27 27 H 1.09005 * 109.47050 * 60.00340 * 4 2 1 28 28 H 1.09004 * 109.47083 * 180.02562 * 4 2 1 29 29 H 1.08996 * 109.47209 * 60.00331 * 5 4 2 30 30 H 1.09003 * 109.47104 * 179.97438 * 5 4 2 31 31 H 1.09006 * 109.47014 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47614 * 300.00481 * 6 5 4 33 33 H 0.96696 * 114.00152 * 60.00094 * 8 7 6 34 34 H 0.97006 * 120.00088 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.47084 * 299.99829 * 20 7 6 36 36 H 1.09003 * 109.47104 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1637 -1.2491 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1637 1.2493 8 8 0.1009 -2.1637 1.2493 9 6 2.0318 -2.8745 2.4797 10 8 3.0445 -2.4958 3.0276 11 8 1.3569 -3.9275 2.9692 12 6 1.8598 -4.5179 4.0732 13 1 2.7661 -4.1396 4.5227 14 6 1.2122 -5.6106 4.6318 15 7 1.7025 -6.1861 5.7069 16 14 -0.3556 -6.2646 3.8548 17 1 -0.0137 -7.2978 2.8445 18 1 -1.2156 -6.8654 4.9058 19 1 -1.0838 -5.1504 3.1965 20 6 2.0399 -0.7213 1.2493 21 1 -0.3634 0.3316 0.9727 22 1 -0.3633 0.6767 -0.7734 23 1 -0.3634 -1.0082 -0.1992 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -0.2074 -2.1392 28 1 3.1300 -0.7217 -1.2490 29 1 0.4400 -2.1637 -1.2492 30 1 1.8929 -2.6775 -2.1394 31 1 1.6762 -3.9125 0.0002 32 1 3.1299 -2.8850 0.0000 33 1 -0.2924 -3.0471 1.2492 34 1 1.2500 -6.9502 6.0973 35 1 3.1300 -0.7213 1.2493 36 1 1.6770 -0.2075 2.1395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850107371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:43 Heat of formation + Delta-G solvation = -169.977294 kcal Electronic energy + Delta-G solvation = -18823.732803 eV Core-core repulsion = 15885.703452 eV Total energy + Delta-G solvation = -2938.029351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94124 -40.23166 -37.46539 -36.86511 -34.52997 -33.66222 -31.35927 -28.10561 -27.92848 -27.28863 -24.74921 -22.68435 -21.41977 -20.24638 -19.85022 -18.64854 -17.58949 -17.26818 -16.47430 -16.34262 -15.66042 -15.39585 -15.26517 -14.82148 -14.45975 -14.16763 -13.93691 -13.60730 -13.31476 -13.23315 -12.85226 -12.82187 -12.62032 -12.44781 -12.33345 -12.01969 -11.93930 -11.88082 -11.57257 -11.35582 -11.18848 -10.92237 -10.86953 -10.48156 -8.58877 -6.46997 1.20764 1.32519 1.47386 1.54905 2.19474 2.27208 2.86066 3.20659 3.57265 3.60682 3.90111 4.05046 4.08915 4.32553 4.39848 4.44686 4.56832 4.69791 4.77161 4.92245 4.96626 5.03192 5.09308 5.13240 5.15258 5.23795 5.32494 5.40679 5.45683 5.47053 5.56085 5.83475 5.86088 6.44659 6.58956 6.76643 7.49040 8.54149 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038053 B = 0.007154 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.648452 B = 3912.830683 C = 4145.883168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.107 4.107 6 C -0.141 4.141 7 C 0.174 3.826 8 O -0.531 6.531 9 C 0.381 3.619 10 O -0.575 6.575 11 O -0.249 6.249 12 C -0.413 4.413 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.987 3.013 17 H -0.256 1.256 18 H -0.269 1.269 19 H -0.240 1.240 20 C -0.083 4.083 21 H 0.033 0.967 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.387 0.613 34 H 0.290 0.710 35 H 0.072 0.928 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 9.203 -17.893 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C -0.196 4.196 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.179 4.179 7 C 0.132 3.868 8 O -0.339 6.339 9 C 0.227 3.773 10 O -0.471 6.471 11 O -0.158 6.158 12 C -0.488 4.488 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.805 3.195 17 H -0.181 1.181 18 H -0.193 1.193 19 H -0.163 1.163 20 C -0.120 4.120 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.227 9.778 -17.578 20.782 hybrid contribution 0.265 -1.091 1.161 1.615 sum -4.962 8.687 -16.417 19.225 Atomic orbital electron populations 1.22071 0.93318 1.03650 1.00500 1.20506 0.96948 0.95182 0.93011 1.21856 1.00967 0.94509 1.02302 1.21648 1.00559 0.95127 0.97197 1.21533 1.02267 0.95335 0.95262 1.22219 1.01725 1.00018 0.93890 1.20999 0.82533 0.95775 0.87523 1.86687 1.16403 1.34779 1.96034 1.25674 0.83372 0.80096 0.88126 1.90568 1.27939 1.66738 1.61865 1.83482 1.51168 1.40660 1.40459 1.20301 1.10984 1.13952 1.03606 0.93141 1.25687 1.02935 0.94564 0.95371 1.69711 1.42102 1.22612 1.21244 0.85037 0.76361 0.79457 0.78643 1.18079 1.19329 1.16318 1.21541 1.00318 0.90529 0.99640 0.94820 0.92176 0.89578 0.92675 0.90515 0.93416 0.89307 0.92005 0.89788 0.89491 0.90496 0.91342 0.76255 0.89998 0.90939 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 7.12 71.98 0.51 -2.58 16 2 C -0.06 -1.29 0.77 -52.18 -0.04 -1.33 16 3 C -0.14 -2.73 8.45 71.98 0.61 -2.12 16 4 C -0.11 -2.01 4.73 30.59 0.14 -1.86 16 5 C -0.11 -2.07 5.59 30.59 0.17 -1.89 16 6 C -0.14 -3.88 4.90 30.59 0.15 -3.73 16 7 C 0.17 6.01 0.94 -11.54 -0.01 6.00 16 8 O -0.53 -16.29 8.69 -135.70 -1.18 -17.47 16 9 C 0.38 18.66 6.78 71.23 0.48 19.14 16 10 O -0.58 -32.85 15.33 20.77 0.32 -32.54 16 11 O -0.25 -13.27 8.01 19.84 0.16 -13.11 16 12 C -0.41 -25.82 10.10 67.94 0.69 -25.14 16 13 H 0.05 3.64 7.09 -2.91 -0.02 3.62 16 14 C 0.01 0.84 5.49 84.88 0.47 1.31 16 15 N -0.92 -56.00 13.96 21.63 0.30 -55.70 16 16 Si 0.99 42.69 28.62 68.60 1.96 44.65 16 17 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.24 -9.61 7.11 99.48 0.71 -8.90 16 20 C -0.08 -2.65 3.40 30.59 0.10 -2.54 16 21 H 0.03 0.87 8.09 -2.38 -0.02 0.85 16 22 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 23 H 0.09 1.94 3.79 -2.39 -0.01 1.93 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.08 1.53 5.95 -2.39 -0.01 1.51 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.39 10.44 8.63 -74.06 -0.64 9.80 16 34 H 0.29 15.90 8.31 -92.70 -0.77 15.13 16 35 H 0.07 2.45 7.87 -2.38 -0.02 2.43 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -74.04 285.29 5.27 -68.77 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.43 Total: 20.15 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.27 Total: -14.75 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.30 Total: -55.70 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -0.70 Total: -63.12 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.96 Total: 44.65 kcal Total: -74.04 5.27 -68.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850107371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.206 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds