Wall clock time and date at job start Mon Mar 30 2020 03:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47410 * 2 1 4 4 C 1.46497 * 119.99678 * 269.99965 * 3 2 1 5 5 C 1.50702 * 109.46788 * 269.99638 * 4 3 2 6 6 H 1.08001 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99781 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99675 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46907 * 90.00494 * 9 7 5 11 11 H 1.48501 * 109.46860 * 209.99904 * 9 7 5 12 12 H 1.48493 * 109.47510 * 330.00359 * 9 7 5 13 13 C 1.34780 * 120.00054 * 89.98914 * 3 2 1 14 14 O 1.21282 * 119.99706 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99940 * 0.02562 * 13 3 2 16 16 H 1.08997 * 110.51071 * 321.28652 * 15 13 3 17 17 C 1.54097 * 110.56390 * 84.18654 * 15 13 3 18 18 O 1.45707 * 104.00726 * 118.57317 * 17 15 13 19 19 C 1.33774 * 109.47549 * 359.97438 * 18 17 15 20 20 O 1.21507 * 123.06686 * 179.97438 * 19 18 17 21 21 N 1.34000 * 113.85818 * 0.02562 * 19 18 17 22 22 H 1.09006 * 109.46599 * 60.00801 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47499 * 300.00947 * 1 2 3 25 25 H 1.08995 * 109.47772 * 239.99498 * 2 1 3 26 26 H 1.09006 * 109.46599 * 119.99199 * 2 1 3 27 27 H 1.08997 * 109.47371 * 29.99365 * 4 3 2 28 28 H 1.09001 * 109.47387 * 149.99939 * 4 3 2 29 29 H 0.97003 * 119.99702 * 179.97438 * 8 7 5 30 30 H 1.09002 * 110.52144 * 359.93900 * 17 15 13 31 31 H 1.09003 * 110.51661 * 237.19771 * 17 15 13 32 32 H 0.97004 * 125.55767 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7037 6 1 4.3430 1.2307 -1.0956 7 6 4.1496 2.3902 -2.8774 8 7 5.3919 2.1839 -3.2567 9 14 3.0133 3.4357 -3.9288 10 1 3.1161 4.8558 -3.5070 11 1 3.4071 3.3133 -5.3554 12 1 1.6138 2.9691 -3.7597 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9920 1.3062 2.4723 16 1 1.0967 0.6883 2.4047 17 6 3.2132 0.4536 2.8679 18 8 3.6462 1.0251 4.1363 19 6 2.8426 2.0429 4.4645 20 8 2.9813 2.6967 5.4792 21 7 1.8699 2.2749 3.5724 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8898 25 1 1.8935 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.5819 1.6876 -2.0284 28 1 2.0957 3.1410 -1.1385 29 1 5.7180 2.5743 -4.0826 30 1 4.0006 0.5436 2.1195 31 1 2.9250 -0.5896 2.9974 32 1 1.1952 2.9684 3.6411 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900325650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:43 Heat of formation + Delta-G solvation = -98.418188 kcal Electronic energy + Delta-G solvation = -17989.738840 eV Core-core repulsion = 14951.272181 eV Total energy + Delta-G solvation = -3038.466659 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74733 -39.21798 -37.05502 -35.76873 -34.63325 -32.84098 -30.62595 -30.06632 -27.75238 -24.75522 -23.19422 -22.35694 -22.24572 -19.13458 -18.20523 -17.45963 -17.10931 -16.81231 -16.09997 -15.44668 -14.84473 -14.51130 -14.25328 -14.05377 -13.75892 -13.52111 -13.38144 -12.85978 -12.52478 -12.19959 -11.99485 -11.61790 -11.16716 -10.97757 -10.81132 -10.69427 -10.62235 -10.29118 -10.05642 -9.65962 -9.00957 -8.69933 -8.00832 -6.19762 -4.20204 2.55398 2.74830 2.82655 3.19932 3.24352 3.27527 3.31412 3.68518 4.09877 4.29251 4.44210 4.56862 4.93564 5.02480 5.11645 5.17978 5.28715 5.40651 5.45566 5.74542 5.94431 6.18520 6.50031 6.72018 6.76011 7.05713 7.20338 7.46522 7.90489 8.08042 8.30900 8.59044 8.81747 9.39308 10.93251 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.029124 B = 0.006990 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.159827 B = 4004.654087 C = 4350.253344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.585 5.585 4 C 0.216 3.784 5 C -0.535 4.535 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.893 5.893 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.496 3.504 14 O -0.517 6.517 15 C 0.073 3.927 16 H 0.121 0.879 17 C 0.054 3.946 18 O -0.324 6.324 19 C 0.653 3.347 20 O -0.526 6.526 21 N -0.710 5.710 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 -7.619 7.196 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 N -0.317 5.317 4 C 0.096 3.904 5 C -0.573 4.573 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.279 3.721 14 O -0.393 6.393 15 C -0.037 4.037 16 H 0.139 0.861 17 C -0.021 4.021 18 O -0.233 6.233 19 C 0.405 3.595 20 O -0.411 6.411 21 N -0.382 5.382 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -10.658 -6.841 7.670 14.806 hybrid contribution -0.855 0.767 -0.974 1.506 sum -11.514 -6.074 6.695 14.638 Atomic orbital electron populations 1.22265 0.96347 1.02016 1.02460 1.21566 0.93744 0.83548 1.03463 1.47985 1.63383 1.13522 1.06784 1.19725 0.97650 0.93402 0.79597 1.21270 0.95173 1.33476 1.07406 0.90657 1.24852 0.94995 0.95683 0.97340 1.69888 1.15060 1.44619 1.23553 0.86860 0.81333 0.81634 0.79904 1.19884 1.20943 1.19076 1.20239 0.79705 0.87396 0.84739 1.90752 1.44287 1.17643 1.86572 1.22468 1.01290 0.91540 0.88430 0.86114 1.24297 0.96041 0.97786 0.83997 1.87271 1.51720 1.45469 1.38887 1.18409 0.78137 0.79593 0.83348 1.91059 1.73791 1.49885 1.26362 1.45640 1.33802 1.37429 1.21282 0.91869 0.91550 0.92973 0.88934 0.91554 0.94835 0.94497 0.92395 0.86581 0.86494 0.71877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.10 37.16 0.38 -1.26 16 2 C 0.10 1.21 5.74 -4.04 -0.02 1.19 16 3 N -0.58 -10.18 2.46 -175.06 -0.43 -10.61 16 4 C 0.22 4.80 4.23 -5.19 -0.02 4.78 16 5 C -0.53 -14.35 9.94 -34.44 -0.34 -14.69 16 6 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 13 C 0.50 8.71 6.78 -10.99 -0.07 8.64 16 14 O -0.52 -11.77 16.18 5.56 0.09 -11.68 16 15 C 0.07 0.89 3.17 -68.19 -0.22 0.68 16 16 H 0.12 1.00 6.16 -51.93 -0.32 0.68 16 17 C 0.05 0.62 7.00 37.73 0.26 0.89 16 18 O -0.32 -4.93 11.09 -37.84 -0.42 -5.35 16 19 C 0.65 10.77 9.16 53.71 0.49 11.26 16 20 O -0.53 -10.39 18.04 -19.11 -0.34 -10.73 16 21 N -0.71 -9.63 5.65 -59.36 -0.34 -9.97 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.45 7.21 -51.93 -0.37 0.07 16 25 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.07 0.58 5.95 -51.93 -0.31 0.27 16 27 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 28 H 0.04 0.89 6.85 -51.93 -0.36 0.54 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.12 1.50 7.72 -51.93 -0.40 1.10 16 31 H 0.12 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.44 5.22 8.96 -40.82 -0.37 4.86 16 LS Contribution 275.99 15.07 4.16 4.16 Total: -1.00 -35.56 275.99 -4.59 -40.15 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.77 Total: 0.42 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 0.36 Total: 13.45 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.01 Total: -46.36 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.67 Total: -27.77 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -35.56 -4.59 -40.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900325650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.269 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds