Wall clock time and date at job start Mon Mar 30 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47033 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00027 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99659 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99977 * 179.97438 * 13 12 11 16 16 H 1.08994 * 110.50550 * 321.28811 * 15 13 12 17 17 C 1.54092 * 110.56142 * 84.19458 * 15 13 12 18 18 O 1.45699 * 104.01097 * 118.57277 * 17 15 13 19 19 C 1.33775 * 109.47554 * 359.97438 * 18 17 15 20 20 O 1.21500 * 123.07002 * 180.02562 * 19 18 17 21 21 N 1.34009 * 113.85614 * 0.02562 * 19 18 17 22 22 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 23 23 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 24 24 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 25 25 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 26 26 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 27 27 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 28 28 H 1.08997 * 109.47600 * 59.99950 * 11 10 9 29 29 H 0.96996 * 119.99691 * 359.97438 * 12 11 10 30 30 H 1.09007 * 110.51490 * 237.20136 * 17 15 13 31 31 H 1.08994 * 110.52305 * 359.93316 * 17 15 13 32 32 H 0.96994 * 125.55383 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 6 1.4800 -4.9871 -0.0247 12 7 2.4320 -6.1007 -0.0299 13 6 1.9827 -7.3713 -0.0364 14 8 0.7903 -7.5928 -0.0384 15 6 2.9620 -8.5168 -0.0423 16 1 3.8155 -8.2861 -0.6796 17 6 3.4246 -8.8407 1.3914 18 8 2.9848 -10.2136 1.6023 19 6 2.3644 -10.6570 0.5032 20 8 1.8975 -11.7749 0.4108 21 7 2.3049 -9.7555 -0.4866 22 1 -0.4850 0.8401 0.0040 23 1 0.6240 -2.5614 0.8771 24 1 0.6246 -2.5525 -0.9029 25 1 2.8725 -3.6002 -0.9065 26 1 2.8711 -3.6087 0.8735 27 1 0.8524 -5.0492 0.8642 28 1 0.8543 -5.0404 -0.9157 29 1 3.3856 -5.9234 -0.0287 30 1 4.5098 -8.7711 1.4675 31 1 2.9468 -8.1720 2.1073 32 1 1.8949 -9.8968 -1.3542 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900572241.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:04 Heat of formation + Delta-G solvation = -120.031137 kcal Electronic energy + Delta-G solvation = -16741.544988 eV Core-core repulsion = 13702.141122 eV Total energy + Delta-G solvation = -3039.403866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.07457 -39.55440 -37.38911 -35.76024 -34.91540 -33.50417 -31.58023 -30.07375 -27.00330 -24.94800 -23.02039 -22.70155 -21.05536 -20.37523 -18.52380 -18.09608 -17.33877 -16.51066 -16.29005 -15.72883 -15.43744 -14.74836 -14.59021 -14.48306 -14.33891 -13.89813 -13.75650 -12.78662 -12.38654 -11.97324 -11.86999 -11.22922 -11.00018 -10.97748 -10.88449 -10.69968 -10.55348 -10.00611 -9.75663 -9.42113 -9.20800 -9.09839 -8.45404 -6.09856 -4.13625 2.14918 2.25959 2.45027 2.85785 3.25114 3.28705 3.32192 3.34265 3.67409 4.20303 4.24072 4.37450 4.64363 4.82616 5.00285 5.26163 5.50812 5.58886 5.97871 6.17152 6.40857 6.42729 6.61861 6.85077 6.87144 7.32332 7.53231 7.64362 7.76169 7.87736 7.97448 8.28234 8.92979 9.51218 11.01331 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.074192 B = 0.003451 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.307523 B = 8111.141599 C = 8299.071286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.114 3.886 12 N -0.717 5.717 13 C 0.494 3.506 14 O -0.521 6.521 15 C 0.075 3.925 16 H 0.127 0.873 17 C 0.055 3.945 18 O -0.323 6.323 19 C 0.652 3.348 20 O -0.520 6.520 21 N -0.710 5.710 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.401 0.599 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.203 -14.248 -0.244 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.368 5.368 13 C 0.276 3.724 14 O -0.397 6.397 15 C -0.035 4.035 16 H 0.145 0.855 17 C -0.021 4.021 18 O -0.233 6.233 19 C 0.404 3.596 20 O -0.404 6.404 21 N -0.383 5.383 22 H 0.072 0.928 23 H 0.038 0.962 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.235 0.765 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 9.033 -14.973 0.090 17.487 hybrid contribution 0.695 1.339 -0.515 1.595 sum 9.728 -13.634 -0.425 16.754 Atomic orbital electron populations 1.69961 1.06092 1.26816 1.50297 1.25036 0.94863 0.99375 0.95168 0.86572 0.79785 0.83360 0.78139 1.20622 1.19867 1.21175 1.21180 0.92978 0.90886 1.51282 0.92607 1.19033 0.93831 0.90840 0.97719 1.21905 0.99824 0.93126 1.01025 1.21760 0.91795 0.84843 1.02381 1.46215 1.11218 1.05537 1.73834 1.20507 0.89615 0.84132 0.78098 1.90792 1.16162 1.84412 1.48293 1.22359 0.96520 0.86399 0.98262 0.85518 1.24271 1.02722 0.80830 0.94241 1.87298 1.70314 1.29531 1.36167 1.18409 0.77456 0.84779 0.78926 1.91088 1.50441 1.18314 1.80532 1.45659 1.62213 1.11914 1.18476 0.92839 0.96245 0.96254 0.92582 0.92541 0.91406 0.91435 0.76463 0.86072 0.86992 0.71573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -13.97 9.11 -34.44 -0.31 -14.28 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.12 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C 0.11 1.71 5.67 -4.04 -0.02 1.69 16 12 N -0.72 -7.53 5.56 -60.29 -0.33 -7.86 16 13 C 0.49 5.53 6.93 -10.99 -0.08 5.45 16 14 O -0.52 -8.50 16.60 5.55 0.09 -8.40 16 15 C 0.08 0.53 4.17 -68.19 -0.28 0.25 16 16 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 17 C 0.05 0.35 7.87 37.73 0.30 0.64 16 18 O -0.32 -3.58 11.09 -37.84 -0.42 -4.00 16 19 C 0.65 8.34 9.16 53.71 0.49 8.83 16 20 O -0.52 -8.67 18.04 -19.11 -0.34 -9.02 16 21 N -0.71 -6.81 5.65 -59.36 -0.34 -7.14 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.40 2.80 8.47 -40.82 -0.35 2.46 16 30 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 0.69 7.72 -51.93 -0.40 0.29 16 32 H 0.44 3.71 8.96 -40.82 -0.37 3.35 16 LS Contribution 286.05 15.07 4.31 4.31 Total: -1.00 -35.48 286.05 -5.64 -41.12 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.04 Total: -1.71 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.29 Total: 2.27 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.07 Total: -40.27 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.67 Total: -21.43 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.48 -5.64 -41.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900572241.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.912 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds