Wall clock time and date at job start Mon Mar 30 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47033 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00027 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99659 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99977 * 179.97438 * 13 12 11 16 16 H 1.08994 * 110.50550 * 321.28811 * 15 13 12 17 17 C 1.54092 * 110.56142 * 84.19458 * 15 13 12 18 18 O 1.45699 * 104.01097 * 118.57277 * 17 15 13 19 19 C 1.33775 * 109.47554 * 359.97438 * 18 17 15 20 20 O 1.21500 * 123.07002 * 180.02562 * 19 18 17 21 21 N 1.34009 * 113.85614 * 0.02562 * 19 18 17 22 22 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 23 23 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 24 24 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 25 25 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 26 26 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 27 27 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 28 28 H 1.08997 * 109.47600 * 59.99950 * 11 10 9 29 29 H 0.96996 * 119.99691 * 359.97438 * 12 11 10 30 30 H 1.09007 * 110.51490 * 237.20136 * 17 15 13 31 31 H 1.08994 * 110.52305 * 359.93316 * 17 15 13 32 32 H 0.96994 * 125.55383 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 6 1.4800 -4.9871 -0.0247 12 7 2.4320 -6.1007 -0.0299 13 6 1.9827 -7.3713 -0.0364 14 8 0.7903 -7.5928 -0.0384 15 6 2.9620 -8.5168 -0.0423 16 1 3.8155 -8.2861 -0.6796 17 6 3.4246 -8.8407 1.3914 18 8 2.9848 -10.2136 1.6023 19 6 2.3644 -10.6570 0.5032 20 8 1.8975 -11.7749 0.4108 21 7 2.3049 -9.7555 -0.4866 22 1 -0.4850 0.8401 0.0040 23 1 0.6240 -2.5614 0.8771 24 1 0.6246 -2.5525 -0.9029 25 1 2.8725 -3.6002 -0.9065 26 1 2.8711 -3.6087 0.8735 27 1 0.8524 -5.0492 0.8642 28 1 0.8543 -5.0404 -0.9157 29 1 3.3856 -5.9234 -0.0287 30 1 4.5098 -8.7711 1.4675 31 1 2.9468 -8.1720 2.1073 32 1 1.8949 -9.8968 -1.3542 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900572241.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:04 Heat of formation + Delta-G solvation = -149.995636 kcal Electronic energy + Delta-G solvation = -16742.844346 eV Core-core repulsion = 13702.141122 eV Total energy + Delta-G solvation = -3040.703225 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.87987 -40.56158 -38.38316 -37.04348 -35.75491 -35.23093 -33.15781 -30.96879 -28.55261 -25.97816 -24.49221 -23.55375 -22.32675 -21.61128 -19.33096 -18.94791 -18.53510 -18.08915 -17.27345 -16.81928 -16.59647 -16.43125 -15.62699 -15.47539 -15.28054 -14.96172 -14.53213 -14.24603 -13.75526 -13.68683 -13.27569 -12.74151 -12.53347 -12.36924 -12.05875 -11.97764 -11.65468 -11.64417 -11.38840 -11.18760 -10.54097 -10.36683 -10.17527 -8.18502 -6.29707 1.27768 1.39559 1.43848 1.44443 1.55292 1.62541 2.00967 2.43203 2.58993 3.09077 3.16012 3.43565 3.78545 4.06202 4.18771 4.24368 4.45047 4.49617 4.57787 4.97026 4.98838 5.20945 5.37738 5.54785 5.63338 5.73556 5.86664 6.06279 6.23279 6.46667 6.88209 6.89242 7.13518 7.40430 8.93479 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.074192 B = 0.003451 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.307523 B = 8111.141599 C = 8299.071286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.258 1.258 6 H -0.288 1.288 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.020 3.980 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.698 5.698 13 C 0.495 3.505 14 O -0.579 6.579 15 C 0.086 3.914 16 H 0.185 0.815 17 C 0.051 3.949 18 O -0.339 6.339 19 C 0.649 3.351 20 O -0.572 6.572 21 N -0.703 5.703 22 H 0.262 0.738 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.424 0.576 30 H 0.175 0.825 31 H 0.112 0.888 32 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.508 -13.802 -0.349 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.182 1.182 6 H -0.214 1.214 7 C -0.577 4.577 8 H 0.088 0.912 9 C -0.017 4.017 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.351 5.351 13 C 0.280 3.720 14 O -0.458 6.458 15 C -0.023 4.023 16 H 0.202 0.798 17 C -0.023 4.023 18 O -0.248 6.248 19 C 0.402 3.598 20 O -0.460 6.460 21 N -0.374 5.374 22 H 0.071 0.929 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.262 0.738 30 H 0.192 0.808 31 H 0.130 0.870 32 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 12.417 -14.499 -0.016 19.089 hybrid contribution -0.349 1.250 -0.462 1.377 sum 12.069 -13.249 -0.478 17.928 Atomic orbital electron populations 1.70115 1.08002 1.27722 1.51880 1.26025 0.95691 1.03588 0.94921 0.85440 0.78771 0.78392 0.78402 1.19921 1.18170 1.21423 1.21715 0.93872 0.91952 1.50124 0.91209 1.18970 0.94599 0.93224 0.94954 1.21595 0.98327 0.91372 1.02615 1.21265 0.92027 0.85554 1.00788 1.45860 1.11696 1.04329 1.73204 1.21248 0.89549 0.84903 0.76335 1.90787 1.19024 1.85218 1.50744 1.22656 0.96197 0.83264 1.00145 0.79771 1.24792 1.05768 0.78408 0.93373 1.87267 1.70046 1.31930 1.35601 1.18563 0.77136 0.84579 0.79559 1.91036 1.52664 1.20681 1.81618 1.45695 1.61622 1.12175 1.17945 0.92923 0.99139 0.99151 0.90918 0.90776 0.93217 0.93240 0.73754 0.80783 0.86957 0.71129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.75 13.29 21.45 0.28 -55.46 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -28.39 9.11 25.60 0.23 -28.15 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 0.98 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.31 5.27 30.60 0.16 -3.15 16 11 C 0.13 3.72 5.67 86.38 0.49 4.21 16 12 N -0.70 -12.62 5.56 -463.05 -2.57 -15.19 16 13 C 0.50 9.93 6.93 87.66 0.61 10.54 16 14 O -0.58 -18.71 16.60 -3.05 -0.05 -18.76 16 15 C 0.09 0.90 4.17 44.50 0.19 1.08 16 16 H 0.19 -0.06 8.14 -2.39 -0.02 -0.08 16 17 C 0.05 0.44 7.87 72.35 0.57 1.01 16 18 O -0.34 -6.88 11.09 -47.35 -0.53 -7.41 16 19 C 0.65 16.09 9.16 129.91 1.19 17.28 16 20 O -0.57 -19.49 18.04 19.69 0.36 -19.14 16 21 N -0.70 -12.17 5.65 -573.42 -3.24 -15.42 16 22 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.42 3.89 8.47 -92.71 -0.79 3.10 16 30 H 0.17 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.11 1.01 7.72 -2.39 -0.02 0.99 16 32 H 0.44 6.94 8.96 -92.71 -0.83 6.11 16 Total: -1.00 -81.87 286.05 -0.14 -82.01 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -0.46 Total: 1.14 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.05 Total: 4.15 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -5.53 Total: -86.07 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.22 Total: -45.31 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -81.87 -0.14 -82.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900572241.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.991 kcal (2) G-P(sol) polarization free energy of solvation -81.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds