Wall clock time and date at job start Mon Mar 30 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47305 * 2 1 4 4 C 1.52997 * 112.99709 * 50.33688 * 3 2 1 5 5 C 1.50696 * 109.47596 * 64.61459 * 4 3 2 6 6 O 1.20834 * 119.99872 * 5.54483 * 5 4 3 7 7 O 1.34227 * 120.00169 * 185.54600 * 5 4 3 8 8 C 1.45207 * 117.00054 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47155 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.46889 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00191 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99646 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00290 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99872 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47234 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47431 * 119.99752 * 14 12 10 17 17 H 1.48501 * 109.47015 * 239.99837 * 14 12 10 18 18 C 1.54027 * 113.81579 * 278.50962 * 3 2 1 19 19 O 1.44451 * 85.42599 * 223.23602 * 18 3 2 20 20 C 1.44182 * 93.37556 * 24.08843 * 19 18 3 21 21 H 1.08998 * 109.47463 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47287 * 300.00072 * 1 2 3 23 23 H 1.09000 * 109.47006 * 59.99462 * 1 2 3 24 24 H 1.09003 * 109.47287 * 239.99928 * 2 1 3 25 25 H 1.08998 * 109.47389 * 120.00164 * 2 1 3 26 26 H 1.08994 * 109.47363 * 184.61863 * 4 3 2 27 27 H 1.09009 * 109.46859 * 304.61605 * 4 3 2 28 28 H 1.08999 * 109.46774 * 300.00171 * 8 7 5 29 29 H 1.08996 * 109.46819 * 59.99375 * 8 7 5 30 30 H 1.08997 * 109.46749 * 300.00011 * 9 8 7 31 31 H 1.09000 * 109.46857 * 60.00089 * 9 8 7 32 32 H 0.96999 * 120.00134 * 180.02562 * 13 12 10 33 33 H 1.09001 * 113.86641 * 337.33973 * 18 3 2 34 34 H 1.09002 * 113.86840 * 109.04632 * 18 3 2 35 35 H 1.08997 * 113.86038 * 221.77048 * 20 19 18 36 36 H 1.08999 * 113.86482 * 90.06560 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3918 2.3058 1.0842 5 6 1.7804 1.7819 2.4427 6 8 2.5802 0.8810 2.5367 7 8 1.2380 2.3159 3.5483 8 6 1.6592 1.7620 4.8228 9 6 0.9402 2.4923 5.9588 10 6 1.3769 1.9170 7.2815 11 1 2.0949 1.1108 7.3090 12 6 0.8588 2.4192 8.4563 13 7 -0.0161 3.4006 8.4228 14 14 1.4005 1.7066 10.0959 15 1 2.3855 0.6201 9.8622 16 1 2.0259 2.7740 10.9173 17 1 0.2204 1.1586 10.8116 18 6 2.0508 2.0984 -1.3936 19 8 3.3487 2.6081 -1.0164 20 6 3.5750 1.5595 -0.0531 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.7329 3.3358 0.9808 27 1 0.3075 2.2696 0.9774 28 1 1.4109 0.7012 4.8577 29 1 2.7361 1.8869 4.9351 30 1 1.1890 3.5530 5.9236 31 1 -0.1368 2.3677 5.8466 32 1 -0.3803 3.7542 9.2494 33 1 2.0796 1.3846 -2.2168 34 1 1.2928 2.8710 -1.5233 35 1 4.0233 1.9055 0.8782 36 1 4.0702 0.6807 -0.4660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924341045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:21 Heat of formation + Delta-G solvation = -120.287041 kcal Electronic energy + Delta-G solvation = -17612.075210 eV Core-core repulsion = 14676.200591 eV Total energy + Delta-G solvation = -2935.874620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22416 -39.56397 -36.21580 -34.42698 -33.36314 -30.70565 -29.85103 -27.54433 -26.71202 -24.93181 -23.01858 -21.57331 -20.65314 -18.72981 -17.43555 -16.59958 -16.30285 -16.21116 -15.86698 -15.62385 -15.23406 -14.49053 -14.34475 -13.61080 -13.15386 -12.90934 -12.72466 -12.39306 -12.37255 -12.10677 -11.82098 -11.23723 -11.08178 -10.98804 -10.83438 -10.75275 -10.65715 -10.32816 -10.11345 -9.81691 -9.65791 -9.56736 -9.29137 -8.46269 -6.12005 -4.16462 2.55160 3.07429 3.26418 3.34018 3.38910 3.58628 4.08708 4.36582 4.39445 4.71239 4.92114 5.09721 5.17035 5.24696 5.25262 5.31800 5.34561 5.43143 5.56881 5.60398 5.84799 5.86583 5.88368 6.01234 6.05500 6.07464 6.13018 6.20906 6.61992 6.99765 7.54520 7.60458 7.85203 8.17189 8.25144 8.89379 9.48197 10.99540 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046799 B = 0.004197 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.158387 B = 6669.159662 C = 6746.798417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.112 4.112 4 C -0.098 4.098 5 C 0.458 3.542 6 O -0.515 6.515 7 O -0.358 6.358 8 C 0.076 3.924 9 C 0.024 3.976 10 C -0.526 4.526 11 H 0.060 0.940 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.045 3.955 19 O -0.385 6.385 20 C 0.051 3.949 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -3.916 -18.574 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.112 4.112 4 C -0.135 4.135 5 C 0.301 3.699 6 O -0.405 6.405 7 O -0.274 6.274 8 C 0.003 3.997 9 C -0.014 4.014 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.031 4.031 19 O -0.304 6.304 20 C -0.025 4.025 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.711 -3.841 -18.456 18.929 hybrid contribution 0.177 -0.565 1.110 1.258 sum 1.889 -4.406 -17.346 17.996 Atomic orbital electron populations 1.21822 0.95594 1.01972 1.01845 1.21640 0.96224 0.94700 1.03316 1.23397 0.96641 0.96467 0.94742 1.21185 1.03488 1.01019 0.87836 1.23365 0.78650 0.80486 0.87424 1.90597 1.32880 1.28998 1.88002 1.86529 1.64294 1.60332 1.16263 1.23629 0.99665 0.98137 0.78222 1.19177 0.96370 0.96376 0.89429 1.21016 1.25914 1.19283 0.90219 0.92222 1.24984 0.94835 0.94900 0.99427 1.69985 1.29385 1.25720 1.27742 0.86420 0.78567 0.79064 0.83293 1.19594 1.20805 1.20821 1.24113 0.86296 0.97521 0.95209 1.89713 1.35571 1.45868 1.59237 1.24042 0.94942 0.90584 0.92963 0.92512 0.92392 0.92693 0.91622 0.89829 0.87193 0.87098 0.92349 0.92348 0.95356 0.95383 0.92752 0.89834 0.89001 0.88691 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.34 37.16 0.35 -1.08 16 2 C -0.12 -1.24 5.11 -26.73 -0.14 -1.38 16 3 C -0.11 -1.20 0.39 -153.43 -0.06 -1.26 16 4 C -0.10 -1.17 4.74 -27.89 -0.13 -1.30 16 5 C 0.46 7.57 7.47 36.00 0.27 7.84 16 6 O -0.51 -9.34 13.02 -18.76 -0.24 -9.59 16 7 O -0.36 -7.04 10.22 -39.25 -0.40 -7.44 16 8 C 0.08 1.68 5.41 37.16 0.20 1.88 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 14 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.05 0.41 8.35 37.64 0.31 0.73 16 19 O -0.39 -4.79 12.38 -35.23 -0.44 -5.22 16 20 C 0.05 0.61 7.65 37.64 0.29 0.89 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.60 6.51 -51.93 -0.34 0.26 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.56 7.98 -51.93 -0.41 0.15 16 25 H 0.08 1.06 6.62 -51.93 -0.34 0.72 16 26 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 27 H 0.11 1.13 6.41 -51.92 -0.33 0.79 16 28 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 29 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.08 0.62 7.99 -51.93 -0.41 0.20 16 34 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.09 1.27 7.19 -51.93 -0.37 0.90 16 36 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 300.01 15.07 4.52 4.52 Total: -1.00 -30.98 300.01 -5.87 -36.85 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.55 Total: -3.17 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 0.53 Total: -6.69 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -1.08 Total: -22.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.98 -5.87 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924341045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.434 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds