Wall clock time and date at job start Mon Mar 30 2020 04:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47305 * 2 1 4 4 C 1.52997 * 112.99709 * 50.33688 * 3 2 1 5 5 C 1.50696 * 109.47596 * 64.61459 * 4 3 2 6 6 O 1.20834 * 119.99872 * 5.54483 * 5 4 3 7 7 O 1.34227 * 120.00169 * 185.54600 * 5 4 3 8 8 C 1.45207 * 117.00054 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47155 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.46889 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00191 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99646 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00290 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99872 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47234 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47431 * 119.99752 * 14 12 10 17 17 H 1.48501 * 109.47015 * 239.99837 * 14 12 10 18 18 C 1.54027 * 113.81579 * 278.50962 * 3 2 1 19 19 O 1.44451 * 85.42599 * 223.23602 * 18 3 2 20 20 C 1.44182 * 93.37556 * 24.08843 * 19 18 3 21 21 H 1.08998 * 109.47463 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47287 * 300.00072 * 1 2 3 23 23 H 1.09000 * 109.47006 * 59.99462 * 1 2 3 24 24 H 1.09003 * 109.47287 * 239.99928 * 2 1 3 25 25 H 1.08998 * 109.47389 * 120.00164 * 2 1 3 26 26 H 1.08994 * 109.47363 * 184.61863 * 4 3 2 27 27 H 1.09009 * 109.46859 * 304.61605 * 4 3 2 28 28 H 1.08999 * 109.46774 * 300.00171 * 8 7 5 29 29 H 1.08996 * 109.46819 * 59.99375 * 8 7 5 30 30 H 1.08997 * 109.46749 * 300.00011 * 9 8 7 31 31 H 1.09000 * 109.46857 * 60.00089 * 9 8 7 32 32 H 0.96999 * 120.00134 * 180.02562 * 13 12 10 33 33 H 1.09001 * 113.86641 * 337.33973 * 18 3 2 34 34 H 1.09002 * 113.86840 * 109.04632 * 18 3 2 35 35 H 1.08997 * 113.86038 * 221.77048 * 20 19 18 36 36 H 1.08999 * 113.86482 * 90.06560 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3918 2.3058 1.0842 5 6 1.7804 1.7819 2.4427 6 8 2.5802 0.8810 2.5367 7 8 1.2380 2.3159 3.5483 8 6 1.6592 1.7620 4.8228 9 6 0.9402 2.4923 5.9588 10 6 1.3769 1.9170 7.2815 11 1 2.0949 1.1108 7.3090 12 6 0.8588 2.4192 8.4563 13 7 -0.0161 3.4006 8.4228 14 14 1.4005 1.7066 10.0959 15 1 2.3855 0.6201 9.8622 16 1 2.0259 2.7740 10.9173 17 1 0.2204 1.1586 10.8116 18 6 2.0508 2.0984 -1.3936 19 8 3.3487 2.6081 -1.0164 20 6 3.5750 1.5595 -0.0531 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.7329 3.3358 0.9808 27 1 0.3075 2.2696 0.9774 28 1 1.4109 0.7012 4.8577 29 1 2.7361 1.8869 4.9351 30 1 1.1890 3.5530 5.9236 31 1 -0.1368 2.3677 5.8466 32 1 -0.3803 3.7542 9.2494 33 1 2.0796 1.3846 -2.2168 34 1 1.2928 2.8710 -1.5233 35 1 4.0233 1.9055 0.8782 36 1 4.0702 0.6807 -0.4660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924341045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:20 Heat of formation + Delta-G solvation = -139.374621 kcal Electronic energy + Delta-G solvation = -17612.902910 eV Core-core repulsion = 14676.200591 eV Total energy + Delta-G solvation = -2936.702319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.22914 -40.87615 -37.72392 -35.46001 -35.33376 -32.47716 -31.04497 -28.55371 -27.50425 -26.88551 -23.80215 -23.32237 -22.25856 -19.68592 -18.99162 -18.17344 -17.81580 -17.30574 -16.95634 -16.75847 -16.58450 -16.23726 -15.45742 -14.76550 -14.42591 -14.39167 -14.11616 -13.58858 -13.42245 -13.19372 -12.98895 -12.93598 -12.68709 -12.58855 -12.49363 -11.96216 -11.76240 -11.66643 -11.47974 -11.44326 -11.20398 -11.05782 -10.63201 -10.60151 -8.28487 -6.41880 1.20656 1.40334 1.40920 1.54275 1.74405 2.39030 2.75217 3.06012 3.18303 3.48251 3.80129 4.00666 4.12127 4.21057 4.25200 4.40531 4.44418 4.48957 4.55074 4.56956 4.68344 4.74271 4.79178 5.02878 5.09080 5.13795 5.19986 5.24550 5.33243 5.43077 5.44816 5.59023 5.74826 6.05030 6.70851 6.77374 7.28244 8.84371 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046799 B = 0.004197 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.158387 B = 6669.159662 C = 6746.798417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.112 4.112 4 C -0.091 4.091 5 C 0.453 3.547 6 O -0.531 6.531 7 O -0.369 6.369 8 C 0.092 3.908 9 C 0.030 3.970 10 C -0.550 4.550 11 H 0.064 0.936 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.974 3.026 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.274 1.274 18 C 0.055 3.945 19 O -0.408 6.408 20 C 0.046 3.954 21 H 0.059 0.941 22 H 0.042 0.958 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.005 0.995 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 -4.578 -19.719 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.113 4.113 4 C -0.128 4.128 5 C 0.298 3.702 6 O -0.421 6.421 7 O -0.286 6.286 8 C 0.019 3.981 9 C -0.008 4.008 10 C -0.588 4.588 11 H 0.082 0.918 12 C -0.192 4.192 13 N -0.566 5.566 14 Si 0.797 3.203 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.021 4.021 19 O -0.327 6.327 20 C -0.031 4.031 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.138 0.862 27 H 0.152 0.848 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.644 -4.508 -19.627 20.205 hybrid contribution 0.196 -0.349 1.375 1.432 sum 1.841 -4.857 -18.252 18.977 Atomic orbital electron populations 1.21824 0.94693 1.02371 1.02232 1.21602 0.96966 0.94157 1.02823 1.23409 0.95593 0.96746 0.95529 1.21351 1.05054 1.01513 0.84886 1.24329 0.77943 0.80044 0.87869 1.90592 1.33569 1.29814 1.88141 1.86520 1.65014 1.60846 1.16242 1.23105 0.98802 0.97428 0.78753 1.18989 0.95387 0.95404 0.90984 1.21402 1.26318 1.19709 0.91381 0.91766 1.25961 0.94626 0.95087 1.03556 1.70100 1.30404 1.26947 1.29138 0.85271 0.78432 0.78504 0.78063 1.18661 1.20045 1.19971 1.24338 0.85215 0.98215 0.94303 1.89695 1.37300 1.46386 1.59365 1.24051 0.95919 0.90869 0.92263 0.92233 0.93901 0.90310 0.89580 0.92880 0.86169 0.84824 0.92236 0.92449 0.97646 0.97496 0.92309 0.87450 0.86980 0.91057 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.34 71.98 0.67 -1.81 16 2 C -0.12 -2.18 5.11 30.60 0.16 -2.03 16 3 C -0.11 -2.18 0.39 -51.48 -0.02 -2.20 16 4 C -0.09 -2.04 4.74 29.85 0.14 -1.89 16 5 C 0.45 14.96 7.47 71.23 0.53 15.49 16 6 O -0.53 -19.44 13.02 21.94 0.29 -19.15 16 7 O -0.37 -14.72 10.22 -51.39 -0.53 -15.25 16 8 C 0.09 4.17 5.41 71.98 0.39 4.56 16 9 C 0.03 1.60 5.35 29.85 0.16 1.76 16 10 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 11 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 12 C 0.01 0.38 5.46 84.65 0.46 0.84 16 13 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 14 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 15 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 C 0.06 0.82 8.35 72.29 0.60 1.42 16 19 O -0.41 -9.37 12.38 -148.98 -1.84 -11.21 16 20 C 0.05 1.03 7.65 72.29 0.55 1.59 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.04 0.81 6.51 -2.39 -0.02 0.80 16 23 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.09 1.23 7.98 -2.39 -0.02 1.21 16 25 H 0.05 1.32 6.62 -2.39 -0.02 1.30 16 26 H 0.12 2.50 8.08 -2.39 -0.02 2.48 16 27 H 0.13 2.41 6.41 -2.38 -0.02 2.39 16 28 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 29 H 0.06 2.57 8.13 -2.39 -0.02 2.56 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.11 1.12 7.99 -2.39 -0.02 1.10 16 34 H 0.11 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.07 1.93 7.19 -2.39 -0.02 1.92 16 36 H 0.10 1.86 8.10 -2.39 -0.02 1.84 16 Total: -1.00 -67.33 300.01 5.16 -62.17 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.05 Total: 6.46 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 3.88 Total: -13.42 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.28 Total: -55.30 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -2.08 Total: -45.61 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -67.33 5.16 -62.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924341045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.205 kcal (2) G-P(sol) polarization free energy of solvation -67.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds