Wall clock time and date at job start Mon Mar 30 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46984 * 2 1 4 4 C 1.50695 * 109.47521 * 120.00435 * 2 1 3 5 5 H 1.07998 * 119.99889 * 85.94363 * 4 2 1 6 6 C 1.37878 * 119.99837 * 265.94450 * 4 2 1 7 7 N 1.31514 * 119.99638 * 177.95825 * 6 4 2 8 8 Si 1.86797 * 120.00167 * 357.96315 * 6 4 2 9 9 H 1.48500 * 109.46790 * 274.92721 * 8 6 4 10 10 H 1.48499 * 109.47197 * 34.93113 * 8 6 4 11 11 H 1.48506 * 109.47069 * 154.93050 * 8 6 4 12 12 N 1.46899 * 109.47160 * 240.00916 * 2 1 3 13 13 C 1.46895 * 111.00559 * 84.99578 * 12 2 1 14 14 C 1.50701 * 109.47763 * 179.97438 * 13 12 2 15 15 C 1.38817 * 120.81015 * 269.72457 * 14 13 12 16 16 F 1.35094 * 120.42859 * 359.97347 * 15 14 13 17 17 C 1.38459 * 119.13742 * 179.70106 * 15 14 13 18 18 N 1.31844 * 120.78079 * 0.58278 * 17 15 14 19 19 C 1.31851 * 121.77560 * 359.71300 * 18 17 15 20 20 C 1.38448 * 120.78370 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.43131 * 180.02562 * 20 19 18 22 22 H 1.09007 * 109.46410 * 175.92791 * 1 2 3 23 23 H 1.08991 * 109.47281 * 295.92315 * 1 2 3 24 24 H 1.08999 * 109.47505 * 55.93266 * 1 2 3 25 25 H 0.97001 * 120.00046 * 179.97438 * 7 6 4 26 26 H 1.00904 * 110.99718 * 321.03602 * 12 2 1 27 27 H 1.09002 * 109.47045 * 300.00316 * 13 12 2 28 28 H 1.09003 * 109.47119 * 59.99973 * 13 12 2 29 29 H 1.07995 * 119.61033 * 180.31286 * 17 15 14 30 30 H 1.08001 * 119.60443 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.1501 -1.7840 1.2237 6 6 2.3419 0.0101 2.3644 7 7 2.7420 -0.6136 3.4509 8 14 2.1927 1.8721 2.3576 9 1 3.4401 2.4666 1.8138 10 1 1.0420 2.2734 1.5090 11 1 1.9773 2.3564 3.7449 12 7 2.0197 -0.6923 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5211 -3.5559 15 6 3.9464 -0.5789 -3.8382 16 9 4.8398 0.0336 -3.0308 17 6 4.3737 -1.2773 -4.9548 18 7 3.5074 -1.8725 -5.7507 19 6 2.2102 -1.8340 -5.5177 20 6 1.7076 -1.1606 -4.4174 21 9 0.3772 -1.1261 -4.1852 22 1 -0.3632 -1.0252 -0.0730 23 1 -0.3633 0.4492 0.9242 24 1 -0.3634 0.5756 -0.8513 25 1 2.9600 -0.1067 4.2486 26 1 1.4496 -1.4978 -1.4101 27 1 1.0870 0.6165 -2.5525 28 1 2.7588 1.0464 -2.1182 29 1 5.4288 -1.3314 -5.1788 30 1 1.5318 -2.3344 -6.1928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930867612.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:59 Heat of formation + Delta-G solvation = -54.001329 kcal Electronic energy + Delta-G solvation = -17132.032395 eV Core-core repulsion = 13984.404280 eV Total energy + Delta-G solvation = -3147.628115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.093 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.15834 -48.97058 -40.06028 -36.59532 -33.51223 -31.92090 -30.78562 -29.24439 -25.67603 -25.11978 -23.62167 -22.15701 -20.15957 -18.19753 -18.16481 -17.25951 -16.48248 -16.26465 -15.88424 -15.35393 -14.88789 -14.50985 -14.23201 -13.85620 -13.62690 -13.24627 -13.13685 -12.51437 -12.31009 -12.18876 -12.03816 -11.32209 -11.12003 -10.74547 -10.32284 -9.98435 -9.85721 -9.57174 -9.20342 -9.04534 -8.58417 -7.56763 -6.08607 -4.06595 0.60815 0.74412 3.25370 3.27572 3.33240 3.34217 3.66399 3.94567 4.18284 4.37263 4.38645 4.45503 4.91765 5.00313 5.27702 5.41834 5.51632 5.60649 5.80032 5.89268 6.15773 6.31634 6.39961 6.51894 6.69324 7.06260 7.46445 7.59289 7.81289 8.16784 8.59758 8.98754 9.52992 11.04856 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.031862 B = 0.006692 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.576648 B = 4182.984124 C = 4615.325205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.182 3.818 3 H 0.038 0.962 4 C -0.493 4.493 5 H 0.077 0.923 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.267 1.267 11 H -0.288 1.288 12 N -0.664 5.664 13 C 0.089 3.911 14 C -0.100 4.100 15 C 0.102 3.898 16 F -0.111 7.111 17 C 0.058 3.942 18 N -0.435 5.435 19 C 0.058 3.942 20 C 0.080 3.920 21 F -0.120 7.120 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.264 0.736 26 H 0.330 0.670 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.174 0.826 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 1.137 -17.159 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.074 3.926 3 H 0.056 0.944 4 C -0.531 4.531 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.192 1.192 11 H -0.214 1.214 12 N -0.294 5.294 13 C -0.040 4.040 14 C -0.110 4.110 15 C 0.079 3.921 16 F -0.089 7.089 17 C -0.100 4.100 18 N -0.143 5.143 19 C -0.100 4.100 20 C 0.058 3.942 21 F -0.099 7.099 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.191 0.809 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.199 0.837 -17.464 17.485 hybrid contribution -1.402 1.661 0.891 2.349 sum -1.203 2.497 -16.572 16.803 Atomic orbital electron populations 1.22668 1.00673 1.00226 0.99556 1.19675 0.89586 0.94703 0.88644 0.94420 1.20809 1.43080 0.95911 0.93348 0.90508 1.24961 0.94567 0.98058 0.95491 1.69881 1.45562 1.35775 1.02408 0.86927 0.79027 0.86669 0.77216 1.20073 1.19241 1.21375 1.61096 1.58277 1.08384 1.01685 1.20877 0.99694 0.95611 0.87822 1.20726 0.92257 0.99770 0.98214 1.18432 0.86309 0.96360 0.90975 1.91593 1.65929 1.79940 1.71450 1.22969 1.01105 0.95320 0.90610 1.67736 1.02050 1.16471 1.28027 1.22897 0.92697 0.98683 0.95749 1.18514 0.78498 1.00517 0.96670 1.91548 1.29590 1.94517 1.94235 0.93353 0.92659 0.96088 0.92583 0.85271 0.93853 0.89471 0.80861 0.81022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 9.11 37.16 0.34 -3.23 16 2 C 0.18 4.22 2.17 -68.87 -0.15 4.07 16 3 H 0.04 0.90 5.13 -51.92 -0.27 0.63 16 4 C -0.49 -13.79 9.20 -34.44 -0.32 -14.11 16 5 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 8 Si 0.87 21.37 26.69 -169.99 -4.54 16.83 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.27 -6.20 6.84 56.52 0.39 -5.81 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 N -0.66 -13.61 6.22 -109.22 -0.68 -14.29 16 13 C 0.09 1.52 5.34 -4.98 -0.03 1.49 16 14 C -0.10 -1.47 5.44 -104.19 -0.57 -2.04 16 15 C 0.10 1.42 7.29 -39.29 -0.29 1.13 16 16 F -0.11 -1.72 16.61 2.25 0.04 -1.69 16 17 C 0.06 0.68 11.17 -17.46 -0.20 0.49 16 18 N -0.44 -5.20 10.36 -13.14 -0.14 -5.34 16 19 C 0.06 0.65 11.17 -17.47 -0.20 0.45 16 20 C 0.08 1.04 7.29 -39.29 -0.29 0.76 16 21 F -0.12 -1.61 16.61 2.25 0.04 -1.57 16 22 H 0.05 0.96 8.06 -51.92 -0.42 0.55 16 23 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 24 H 0.02 0.38 7.56 -51.93 -0.39 -0.02 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.33 6.44 8.42 -39.29 -0.33 6.11 16 27 H 0.04 0.70 7.10 -51.93 -0.37 0.33 16 28 H 0.09 1.52 7.63 -51.93 -0.40 1.12 16 29 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 269.39 15.07 4.06 4.06 Total: -1.00 -30.39 269.39 -5.23 -35.61 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.00 Total: 2.04 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.78 Total: -9.04 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.04 Total: -46.24 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.07 Total: -3.26 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.54 Total: 16.83 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.39 -5.23 -35.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867612.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.391 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds