Wall clock time and date at job start Mon Mar 30 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46984 * 2 1 4 4 C 1.50695 * 109.47521 * 120.00435 * 2 1 3 5 5 H 1.07998 * 119.99889 * 85.94363 * 4 2 1 6 6 C 1.37878 * 119.99837 * 265.94450 * 4 2 1 7 7 N 1.31514 * 119.99638 * 177.95825 * 6 4 2 8 8 Si 1.86797 * 120.00167 * 357.96315 * 6 4 2 9 9 H 1.48500 * 109.46790 * 274.92721 * 8 6 4 10 10 H 1.48499 * 109.47197 * 34.93113 * 8 6 4 11 11 H 1.48506 * 109.47069 * 154.93050 * 8 6 4 12 12 N 1.46899 * 109.47160 * 240.00916 * 2 1 3 13 13 C 1.46895 * 111.00559 * 84.99578 * 12 2 1 14 14 C 1.50701 * 109.47763 * 179.97438 * 13 12 2 15 15 C 1.38817 * 120.81015 * 269.72457 * 14 13 12 16 16 F 1.35094 * 120.42859 * 359.97347 * 15 14 13 17 17 C 1.38459 * 119.13742 * 179.70106 * 15 14 13 18 18 N 1.31844 * 120.78079 * 0.58278 * 17 15 14 19 19 C 1.31851 * 121.77560 * 359.71300 * 18 17 15 20 20 C 1.38448 * 120.78370 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.43131 * 180.02562 * 20 19 18 22 22 H 1.09007 * 109.46410 * 175.92791 * 1 2 3 23 23 H 1.08991 * 109.47281 * 295.92315 * 1 2 3 24 24 H 1.08999 * 109.47505 * 55.93266 * 1 2 3 25 25 H 0.97001 * 120.00046 * 179.97438 * 7 6 4 26 26 H 1.00904 * 110.99718 * 321.03602 * 12 2 1 27 27 H 1.09002 * 109.47045 * 300.00316 * 13 12 2 28 28 H 1.09003 * 109.47119 * 59.99973 * 13 12 2 29 29 H 1.07995 * 119.61033 * 180.31286 * 17 15 14 30 30 H 1.08001 * 119.60443 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.1501 -1.7840 1.2237 6 6 2.3419 0.0101 2.3644 7 7 2.7420 -0.6136 3.4509 8 14 2.1927 1.8721 2.3576 9 1 3.4401 2.4666 1.8138 10 1 1.0420 2.2734 1.5090 11 1 1.9773 2.3564 3.7449 12 7 2.0197 -0.6923 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5211 -3.5559 15 6 3.9464 -0.5789 -3.8382 16 9 4.8398 0.0336 -3.0308 17 6 4.3737 -1.2773 -4.9548 18 7 3.5074 -1.8725 -5.7507 19 6 2.2102 -1.8340 -5.5177 20 6 1.7076 -1.1606 -4.4174 21 9 0.3772 -1.1261 -4.1852 22 1 -0.3632 -1.0252 -0.0730 23 1 -0.3633 0.4492 0.9242 24 1 -0.3634 0.5756 -0.8513 25 1 2.9600 -0.1067 4.2486 26 1 1.4496 -1.4978 -1.4101 27 1 1.0870 0.6165 -2.5525 28 1 2.7588 1.0464 -2.1182 29 1 5.4288 -1.3314 -5.1788 30 1 1.5318 -2.3344 -6.1928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930867612.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:59 Heat of formation + Delta-G solvation = -75.556381 kcal Electronic energy + Delta-G solvation = -17132.967092 eV Core-core repulsion = 13984.404280 eV Total energy + Delta-G solvation = -3148.562812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.16773 -50.08837 -41.04546 -38.20284 -35.09410 -33.72581 -31.73613 -30.80400 -27.31989 -26.81544 -24.60799 -23.33224 -22.01394 -19.34060 -19.20207 -19.08764 -17.65879 -17.37316 -16.92694 -16.62289 -16.42802 -16.05349 -15.61956 -15.27888 -14.75399 -14.59582 -14.44579 -14.22888 -13.86726 -13.59298 -13.38059 -12.98376 -12.76480 -12.61093 -12.08754 -11.81224 -11.26538 -10.98097 -10.81065 -10.67406 -9.99997 -9.18234 -8.28373 -6.31422 -0.34619 -0.30190 1.33277 1.34203 1.43944 2.30524 2.33147 2.66960 2.95228 3.00067 3.19197 3.36389 3.45957 3.67759 3.94710 4.22532 4.33778 4.44925 4.53944 4.63350 4.65714 4.73603 4.78990 4.98410 5.37491 5.42817 5.62581 5.93188 6.52722 6.54259 6.55753 6.73368 7.32406 8.89020 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.031862 B = 0.006692 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.576648 B = 4182.984124 C = 4615.325205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.037 0.963 4 C -0.499 4.499 5 H 0.031 0.969 6 C 0.010 3.990 7 N -0.949 5.949 8 Si 0.940 3.060 9 H -0.271 1.271 10 H -0.243 1.243 11 H -0.285 1.285 12 N -0.679 5.679 13 C 0.094 3.906 14 C -0.116 4.116 15 C 0.082 3.918 16 F -0.126 7.126 17 C 0.073 3.927 18 N -0.440 5.440 19 C 0.075 3.925 20 C 0.076 3.924 21 F -0.123 7.123 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.266 0.734 26 H 0.334 0.666 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.203 0.797 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 2.093 -19.578 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.076 3.924 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.049 0.951 6 C -0.187 4.187 7 N -0.590 5.590 8 Si 0.764 3.236 9 H -0.196 1.196 10 H -0.166 1.166 11 H -0.211 1.211 12 N -0.310 5.310 13 C -0.035 4.035 14 C -0.125 4.125 15 C 0.060 3.940 16 F -0.104 7.104 17 C -0.085 4.085 18 N -0.148 5.148 19 C -0.083 4.083 20 C 0.054 3.946 21 F -0.101 7.101 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.152 0.848 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.220 0.780 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.461 1.787 -19.918 20.003 hybrid contribution -1.181 1.227 1.536 2.293 sum -1.642 3.013 -18.382 18.700 Atomic orbital electron populations 1.22508 0.98494 1.00960 1.00431 1.19489 0.91059 0.93955 0.87868 0.94458 1.21089 1.42710 0.94195 0.95739 0.95061 1.25850 0.94387 1.03484 0.94938 1.70043 1.47660 1.37952 1.03352 0.85858 0.79952 0.80069 0.77701 1.19600 1.16594 1.21114 1.60789 1.58536 1.09209 1.02444 1.20779 1.00316 0.95021 0.87413 1.20626 0.93065 1.00809 0.98041 1.18667 0.85928 0.97518 0.91896 1.91552 1.66355 1.80444 1.72091 1.23384 1.02474 0.93490 0.89176 1.67881 1.02415 1.16525 1.27936 1.23427 0.92877 0.97025 0.95018 1.18583 0.78177 1.00810 0.97044 1.91542 1.29704 1.94576 1.94324 0.93148 0.93537 0.92987 0.92537 0.84804 0.92637 0.90217 0.78046 0.77624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.55 9.11 71.98 0.66 -5.89 16 2 C 0.18 8.46 2.17 44.17 0.10 8.56 16 3 H 0.04 1.71 5.13 -2.38 -0.01 1.70 16 4 C -0.50 -28.58 9.20 25.60 0.24 -28.34 16 5 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 6 C 0.01 0.61 5.47 84.65 0.46 1.07 16 7 N -0.95 -59.75 13.96 21.45 0.30 -59.46 16 8 Si 0.94 43.98 26.69 68.60 1.83 45.82 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.24 -10.27 6.84 99.48 0.68 -9.59 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 N -0.68 -27.51 6.22 -499.47 -3.11 -30.62 16 13 C 0.09 3.06 5.34 85.56 0.46 3.52 16 14 C -0.12 -3.23 5.44 -19.59 -0.11 -3.34 16 15 C 0.08 2.18 7.29 22.46 0.16 2.35 16 16 F -0.13 -3.86 16.61 44.97 0.75 -3.11 16 17 C 0.07 1.52 11.17 84.74 0.95 2.46 16 18 N -0.44 -9.12 10.36 -195.48 -2.02 -11.15 16 19 C 0.07 1.42 11.17 84.74 0.95 2.36 16 20 C 0.08 1.79 7.29 22.46 0.16 1.96 16 21 F -0.12 -2.98 16.61 44.97 0.75 -2.24 16 22 H 0.05 1.95 8.06 -2.38 -0.02 1.93 16 23 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 24 H 0.05 1.74 7.56 -2.39 -0.02 1.72 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.33 12.91 8.42 -89.69 -0.75 12.15 16 27 H 0.06 1.67 7.10 -2.39 -0.02 1.65 16 28 H 0.08 2.70 7.63 -2.39 -0.02 2.68 16 29 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 30 H 0.21 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -66.79 269.39 2.91 -63.88 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.40 Total: 12.16 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.02 Total: -15.29 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -4.83 Total: -101.22 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 1.49 Total: -5.35 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.83 Total: 45.82 kcal Total: -66.79 2.91 -63.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867612.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.673 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds