Wall clock time and date at job start Mon Mar 30 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47180 * 286.99328 * 3 2 1 5 5 C 1.36946 * 119.99926 * 263.93816 * 4 3 2 6 6 H 1.07995 * 120.00049 * 199.73603 * 5 4 3 7 7 C 1.38818 * 119.99563 * 19.73497 * 5 4 3 8 8 N 1.31617 * 119.99878 * 22.02463 * 7 5 4 9 9 Si 1.86791 * 119.99695 * 202.01870 * 7 5 4 10 10 H 1.48503 * 109.47081 * 60.00554 * 9 7 5 11 11 H 1.48503 * 109.47279 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47609 * 300.00606 * 9 7 5 13 13 C 1.46496 * 120.00326 * 83.94248 * 4 3 2 14 14 C 1.54350 * 110.82122 * 232.97140 * 13 4 3 15 15 C 1.51368 * 105.16859 * 215.42540 * 14 13 4 16 16 C 1.38496 * 130.38785 * 197.18761 * 15 14 13 17 17 C 1.38110 * 120.21337 * 179.97438 * 16 15 14 18 18 C 1.38255 * 119.93351 * 359.97438 * 17 16 15 19 19 C 1.38101 * 119.93483 * 0.02562 * 18 17 16 20 20 C 1.38217 * 109.75984 * 17.18499 * 15 14 13 21 21 C 1.51373 * 109.75826 * 0.02562 * 20 15 14 22 22 H 1.09000 * 109.47034 * 46.99463 * 3 2 1 23 23 H 1.09002 * 109.47150 * 166.98990 * 3 2 1 24 24 H 0.97002 * 119.99231 * 179.97438 * 8 7 5 25 25 H 1.09005 * 110.72921 * 356.58759 * 13 4 3 26 26 H 1.09001 * 110.30033 * 334.34549 * 14 13 4 27 27 H 1.09001 * 110.30549 * 96.49761 * 14 13 4 28 28 H 1.07995 * 119.89599 * 0.02562 * 16 15 14 29 29 H 1.08000 * 120.02937 * 179.97438 * 17 16 15 30 30 H 1.07994 * 120.02845 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.88634 * 180.02562 * 19 18 17 32 32 H 1.09001 * 110.29715 * 223.88751 * 21 20 15 33 33 H 1.08993 * 110.38563 * 101.77610 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.4028 1.3209 5 6 3.4424 0.5488 2.2430 6 1 4.0855 0.2897 3.0710 7 6 2.9664 1.8463 2.1133 8 7 1.8807 2.0815 1.4074 9 14 3.8666 3.2584 2.9407 10 1 5.2557 3.3323 2.4208 11 1 3.1610 4.5326 2.6514 12 1 3.8987 3.0330 4.4082 13 6 3.2151 -1.8241 1.6553 14 6 2.4737 -2.1418 2.9713 15 6 3.3108 -3.2040 3.6511 16 6 2.9911 -4.0788 4.6760 17 6 3.9315 -4.9764 5.1424 18 6 5.1962 -5.0027 4.5846 19 6 5.5169 -4.1310 3.5625 20 6 4.5755 -3.2296 3.0941 21 6 4.6750 -2.1859 2.0022 22 1 2.9716 -0.7001 -0.7515 23 1 2.9709 1.0021 -0.2314 24 1 1.5479 2.9881 1.3171 25 1 2.8452 -2.4447 0.8391 26 1 2.4133 -1.2506 3.5960 27 1 1.4753 -2.5249 2.7599 28 1 2.0030 -4.0597 5.1115 29 1 3.6791 -5.6570 5.9421 30 1 5.9329 -5.7036 4.9484 31 1 6.5049 -4.1525 3.1270 32 1 5.1796 -2.5993 1.1289 33 1 5.2073 -1.3066 2.3649 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615947722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:03 Heat of formation + Delta-G solvation = 73.866542 kcal Electronic energy + Delta-G solvation = -16780.885306 eV Core-core repulsion = 14193.031488 eV Total energy + Delta-G solvation = -2587.853818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69094 -36.79691 -34.86178 -33.51973 -31.06471 -31.02790 -28.11495 -26.70318 -26.49962 -23.57434 -21.46379 -20.49509 -19.82086 -17.37311 -15.96161 -15.87537 -15.43636 -14.97129 -14.56186 -14.13881 -13.67118 -13.01603 -12.93310 -12.57258 -12.16606 -12.09960 -11.96772 -11.61058 -11.36851 -10.96385 -10.91340 -10.82870 -10.62857 -10.59416 -10.39990 -10.19557 -9.93393 -9.85703 -8.71726 -8.48595 -8.05357 -7.17554 -6.01092 -3.40569 1.70152 1.71326 3.31438 3.39149 3.39414 4.07469 4.10184 4.35469 4.46571 4.89138 5.10457 5.20002 5.21919 5.32157 5.48605 5.61181 5.73080 5.80048 5.86766 5.91171 6.07791 6.29735 6.38318 6.45613 6.56397 6.60498 6.75264 6.77645 6.83044 6.92339 6.97943 7.12728 7.35692 7.65048 8.12562 8.92795 9.18435 9.58530 10.03554 11.07072 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.007522 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.372383 B = 3721.351111 C = 4307.236659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.247 3.753 3 C 0.258 3.742 4 N -0.572 5.572 5 C -0.267 4.267 6 H 0.081 0.919 7 C 0.009 3.991 8 N -0.896 5.896 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.176 3.824 14 C -0.098 4.098 15 C -0.083 4.083 16 C -0.115 4.115 17 C -0.129 4.129 18 C -0.132 4.132 19 C -0.114 4.114 20 C -0.088 4.088 21 C -0.097 4.097 22 H 0.061 0.939 23 H 0.110 0.890 24 H 0.261 0.739 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.516 -10.289 2.017 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.071 4.071 3 C 0.128 3.872 4 N -0.291 5.291 5 C -0.395 4.395 6 H 0.098 0.902 7 C -0.191 4.191 8 N -0.539 5.539 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.068 3.932 14 C -0.137 4.137 15 C -0.083 4.083 16 C -0.133 4.133 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.132 4.132 20 C -0.089 4.089 21 C -0.136 4.136 22 H 0.079 0.921 23 H 0.127 0.873 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.758 -10.083 1.971 11.777 hybrid contribution 0.690 0.867 0.801 1.367 sum 6.448 -9.216 2.772 11.584 Atomic orbital electron populations 1.80810 1.14495 1.12617 1.10823 1.30500 0.96350 0.89671 0.90615 1.18280 0.80443 1.01620 0.86811 1.44110 1.73745 0.99983 1.11255 1.19075 1.24410 0.88536 1.07471 0.90153 1.24929 0.95796 0.98713 0.99649 1.69902 1.19300 1.20665 1.44048 0.86318 0.79478 0.81555 0.79187 1.20715 1.21691 1.20891 1.21029 0.92160 0.85723 0.94312 1.21635 0.97407 0.96501 0.98181 1.20847 0.96060 0.96073 0.95355 1.20644 0.99421 0.96123 0.97137 1.20916 0.93900 0.99470 1.00441 1.20902 0.96684 0.99800 0.97621 1.20604 0.98839 0.96092 0.97632 1.20790 0.93931 0.96245 0.97894 1.21626 1.00379 0.96398 0.95157 0.92139 0.87252 0.92900 0.91360 0.88323 0.92160 0.86803 0.86654 0.86648 0.86752 0.91720 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.84 18.54 42.16 0.78 -12.06 16 2 C 0.25 5.78 13.57 -20.76 -0.28 5.49 16 3 C 0.26 5.28 5.36 -6.83 -0.04 5.24 16 4 N -0.57 -12.20 2.55 -167.36 -0.43 -12.62 16 5 C -0.27 -6.33 7.66 -15.05 -0.12 -6.45 16 6 H 0.08 1.91 7.08 -52.49 -0.37 1.54 16 7 C 0.01 0.22 4.82 -17.43 -0.08 0.14 16 8 N -0.90 -23.87 9.60 55.49 0.53 -23.34 16 9 Si 0.91 20.24 29.61 -169.99 -5.03 15.21 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 C 0.18 3.24 3.60 -66.52 -0.24 3.00 16 14 C -0.10 -1.85 6.37 -26.85 -0.17 -2.03 16 15 C -0.08 -1.40 6.14 -104.21 -0.64 -2.04 16 16 C -0.12 -1.74 10.04 -39.53 -0.40 -2.14 16 17 C -0.13 -1.72 10.05 -39.62 -0.40 -2.12 16 18 C -0.13 -1.71 10.05 -39.63 -0.40 -2.11 16 19 C -0.11 -1.60 10.04 -39.54 -0.40 -2.00 16 20 C -0.09 -1.42 6.14 -104.20 -0.64 -2.06 16 21 C -0.10 -1.59 6.36 -26.84 -0.17 -1.76 16 22 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 23 H 0.11 2.38 6.61 -51.93 -0.34 2.03 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.07 1.18 7.97 -51.93 -0.41 0.76 16 26 H 0.10 2.13 6.90 -51.93 -0.36 1.77 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.69 6.71 -51.93 -0.35 1.34 16 LS Contribution 282.00 15.07 4.25 4.25 Total: -1.00 -28.16 282.00 -7.79 -35.95 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.93 Total: 1.44 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -3.97 Total: -8.83 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.89 Total: -48.02 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.16 -7.79 -35.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615947722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.818 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds