Wall clock time and date at job start Mon Mar 30 2020 03:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47180 * 286.99328 * 3 2 1 5 5 C 1.36946 * 119.99926 * 263.93816 * 4 3 2 6 6 H 1.07995 * 120.00049 * 199.73603 * 5 4 3 7 7 C 1.38818 * 119.99563 * 19.73497 * 5 4 3 8 8 N 1.31617 * 119.99878 * 22.02463 * 7 5 4 9 9 Si 1.86791 * 119.99695 * 202.01870 * 7 5 4 10 10 H 1.48503 * 109.47081 * 60.00554 * 9 7 5 11 11 H 1.48503 * 109.47279 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47609 * 300.00606 * 9 7 5 13 13 C 1.46496 * 120.00326 * 83.94248 * 4 3 2 14 14 C 1.54350 * 110.82122 * 232.97140 * 13 4 3 15 15 C 1.51368 * 105.16859 * 215.42540 * 14 13 4 16 16 C 1.38496 * 130.38785 * 197.18761 * 15 14 13 17 17 C 1.38110 * 120.21337 * 179.97438 * 16 15 14 18 18 C 1.38255 * 119.93351 * 359.97438 * 17 16 15 19 19 C 1.38101 * 119.93483 * 0.02562 * 18 17 16 20 20 C 1.38217 * 109.75984 * 17.18499 * 15 14 13 21 21 C 1.51373 * 109.75826 * 0.02562 * 20 15 14 22 22 H 1.09000 * 109.47034 * 46.99463 * 3 2 1 23 23 H 1.09002 * 109.47150 * 166.98990 * 3 2 1 24 24 H 0.97002 * 119.99231 * 179.97438 * 8 7 5 25 25 H 1.09005 * 110.72921 * 356.58759 * 13 4 3 26 26 H 1.09001 * 110.30033 * 334.34549 * 14 13 4 27 27 H 1.09001 * 110.30549 * 96.49761 * 14 13 4 28 28 H 1.07995 * 119.89599 * 0.02562 * 16 15 14 29 29 H 1.08000 * 120.02937 * 179.97438 * 17 16 15 30 30 H 1.07994 * 120.02845 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.88634 * 180.02562 * 19 18 17 32 32 H 1.09001 * 110.29715 * 223.88751 * 21 20 15 33 33 H 1.08993 * 110.38563 * 101.77610 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.4028 1.3209 5 6 3.4424 0.5488 2.2430 6 1 4.0855 0.2897 3.0710 7 6 2.9664 1.8463 2.1133 8 7 1.8807 2.0815 1.4074 9 14 3.8666 3.2584 2.9407 10 1 5.2557 3.3323 2.4208 11 1 3.1610 4.5326 2.6514 12 1 3.8987 3.0330 4.4082 13 6 3.2151 -1.8241 1.6553 14 6 2.4737 -2.1418 2.9713 15 6 3.3108 -3.2040 3.6511 16 6 2.9911 -4.0788 4.6760 17 6 3.9315 -4.9764 5.1424 18 6 5.1962 -5.0027 4.5846 19 6 5.5169 -4.1310 3.5625 20 6 4.5755 -3.2296 3.0941 21 6 4.6750 -2.1859 2.0022 22 1 2.9716 -0.7001 -0.7515 23 1 2.9709 1.0021 -0.2314 24 1 1.5479 2.9881 1.3171 25 1 2.8452 -2.4447 0.8391 26 1 2.4133 -1.2506 3.5960 27 1 1.4753 -2.5249 2.7599 28 1 2.0030 -4.0597 5.1115 29 1 3.6791 -5.6570 5.9421 30 1 5.9329 -5.7036 4.9484 31 1 6.5049 -4.1525 3.1270 32 1 5.1796 -2.5993 1.1289 33 1 5.2073 -1.3066 2.3649 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615947722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:02 Heat of formation + Delta-G solvation = 60.119979 kcal Electronic energy + Delta-G solvation = -16781.481402 eV Core-core repulsion = 14193.031488 eV Total energy + Delta-G solvation = -2588.449914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93205 -38.34533 -36.56639 -35.15099 -32.80852 -32.18564 -29.52503 -28.22234 -27.99966 -25.19328 -22.73096 -21.64013 -21.34934 -19.14362 -17.60021 -17.30909 -16.86662 -16.34245 -15.81272 -15.70543 -15.34637 -14.49322 -14.15641 -13.90521 -13.73310 -13.55858 -13.54418 -13.22103 -13.12335 -12.71659 -12.63282 -12.29211 -12.24868 -11.92056 -11.89302 -11.70864 -11.53747 -11.49668 -10.56434 -9.60621 -9.26182 -8.96067 -7.92422 -5.30530 0.57548 0.58881 1.51752 1.55294 1.60397 2.28380 2.52481 2.61699 2.96684 3.26559 3.56804 3.70315 3.98224 4.04304 4.26316 4.28308 4.42472 4.46476 4.55195 4.77502 4.86044 4.94738 5.04477 5.10511 5.15115 5.23406 5.33466 5.42554 5.48615 5.65365 5.69982 5.72719 5.93631 6.24698 6.29303 7.07222 7.34927 7.78880 8.19667 9.13714 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.007522 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.372383 B = 3721.351111 C = 4307.236659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C 0.260 3.740 3 C 0.257 3.743 4 N -0.580 5.580 5 C -0.250 4.250 6 H 0.078 0.922 7 C -0.039 4.039 8 N -0.927 5.927 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.304 1.304 12 H -0.288 1.288 13 C 0.170 3.830 14 C -0.093 4.093 15 C -0.110 4.110 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.102 4.102 21 C -0.084 4.084 22 H 0.111 0.889 23 H 0.098 0.902 24 H 0.249 0.751 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.829 -12.500 2.495 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.232 5.232 2 C -0.058 4.058 3 C 0.127 3.873 4 N -0.299 5.299 5 C -0.379 4.379 6 H 0.096 0.904 7 C -0.235 4.235 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.231 1.231 12 H -0.214 1.214 13 C 0.063 3.937 14 C -0.131 4.131 15 C -0.110 4.110 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.102 4.102 21 C -0.123 4.123 22 H 0.129 0.871 23 H 0.115 0.885 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.137 0.863 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.107 0.893 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.103 -12.326 2.459 14.955 hybrid contribution 0.007 1.403 0.739 1.586 sum 8.111 -10.923 3.198 13.976 Atomic orbital electron populations 1.80799 1.15932 1.14189 1.12307 1.31203 0.96985 0.88318 0.89302 1.18596 0.78625 1.02469 0.87618 1.44301 1.73362 1.00919 1.11350 1.19232 1.22778 0.88865 1.07067 0.90425 1.25456 0.96532 1.00505 1.00999 1.70039 1.20862 1.19921 1.46400 0.85477 0.78823 0.78912 0.77986 1.19596 1.23074 1.21416 1.21249 0.93747 0.84217 0.94507 1.21439 0.97555 0.95912 0.98244 1.20749 0.96396 0.96843 0.97034 1.20870 1.00471 0.96408 0.96888 1.21300 0.93605 0.98910 1.00659 1.21361 0.97111 0.99399 0.96408 1.20929 0.99387 0.95344 0.97733 1.20845 0.94169 0.97049 0.98175 1.21422 0.98385 0.96109 0.96362 0.87105 0.88460 0.94144 0.89782 0.92050 0.93359 0.86320 0.83682 0.83153 0.84337 0.89296 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.38 18.54 20.01 0.37 -28.01 16 2 C 0.26 12.19 13.57 89.44 1.21 13.41 16 3 C 0.26 10.27 5.36 84.57 0.45 10.72 16 4 N -0.58 -24.51 2.55 -683.40 -1.74 -26.25 16 5 C -0.25 -11.93 7.66 84.03 0.64 -11.29 16 6 H 0.08 3.71 7.08 -2.91 -0.02 3.69 16 7 C -0.04 -1.97 4.82 84.86 0.41 -1.56 16 8 N -0.93 -50.49 9.60 21.65 0.21 -50.28 16 9 Si 0.96 42.24 29.61 68.60 2.03 44.27 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.17 6.11 3.60 45.91 0.17 6.27 16 14 C -0.09 -3.55 6.37 30.52 0.19 -3.36 16 15 C -0.11 -3.64 6.14 -19.60 -0.12 -3.76 16 16 C -0.13 -3.69 10.04 22.30 0.22 -3.46 16 17 C -0.13 -2.93 10.05 22.24 0.22 -2.71 16 18 C -0.13 -2.69 10.05 22.24 0.22 -2.47 16 19 C -0.12 -2.85 10.04 22.30 0.22 -2.62 16 20 C -0.10 -3.08 6.14 -19.59 -0.12 -3.20 16 21 C -0.08 -2.61 6.36 30.52 0.19 -2.42 16 22 H 0.11 3.33 8.10 -2.39 -0.02 3.31 16 23 H 0.10 4.21 6.61 -2.39 -0.02 4.19 16 24 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.08 2.75 7.97 -2.38 -0.02 2.73 16 26 H 0.06 2.77 6.90 -2.39 -0.02 2.75 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 2.66 6.71 -2.39 -0.02 2.65 16 Total: -1.00 -61.65 282.00 5.91 -55.74 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.11 Total: 10.97 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 3.93 Total: -6.45 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -1.16 Total: -104.54 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -61.65 5.91 -55.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615947722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.861 kcal (2) G-P(sol) polarization free energy of solvation -61.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds