Wall clock time and date at job start Mon Mar 30 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48507 * 109.47115 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47204 * 299.99558 * 3 2 1 6 6 H 1.48494 * 109.47406 * 59.99705 * 3 2 1 7 7 C 1.37879 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00172 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47027 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99570 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00111 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99925 * 179.97438 * 11 10 9 14 14 N 1.46898 * 109.47041 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99888 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47378 * 180.02562 * 15 14 13 17 17 H 1.09003 * 110.27608 * 60.63039 * 16 15 14 18 18 C 1.54938 * 110.31267 * 182.83604 * 16 15 14 19 19 C 1.55305 * 100.94557 * 155.36036 * 18 16 15 20 20 C 1.54387 * 102.24897 * 325.86297 * 19 18 16 21 21 O 1.43235 * 107.58832 * 21.36060 * 20 19 18 22 22 H 0.96998 * 120.00105 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47028 * 59.99372 * 9 7 2 24 24 H 1.09004 * 109.46843 * 299.99446 * 9 7 2 25 25 H 0.96994 * 120.00036 * 359.97438 * 10 9 7 26 26 H 1.08997 * 109.46924 * 59.99439 * 13 11 10 27 27 H 1.08995 * 109.46962 * 299.99594 * 13 11 10 28 28 H 1.00901 * 111.00121 * 56.04537 * 14 13 11 29 29 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 30 30 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 31 31 H 1.09001 * 111.12338 * 273.27490 * 18 16 15 32 32 H 1.09000 * 111.12787 * 37.43345 * 18 16 15 33 33 H 1.09005 * 110.84709 * 207.67575 * 19 18 16 34 34 H 1.08999 * 111.02594 * 84.13402 * 19 18 16 35 35 H 1.09000 * 109.83039 * 261.84529 * 20 19 18 36 36 H 1.08999 * 109.90270 * 140.91516 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0015 12 8 0.5613 -5.1049 0.0006 13 6 2.7330 -6.0289 0.0022 14 7 1.9985 -7.3010 0.0023 15 6 2.9229 -8.4427 0.0023 16 6 2.1229 -9.7468 0.0018 17 1 1.4982 -9.8064 -0.8895 18 6 3.0787 -10.9641 0.0737 19 6 2.1443 -12.0361 0.6980 20 6 1.2621 -11.1917 1.6425 21 8 1.3131 -9.8353 1.1849 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5568 0.8904 25 1 3.1566 -3.4354 0.0021 26 1 3.3591 -5.9710 0.8925 27 1 3.3602 -5.9712 -0.8874 28 1 1.3623 -7.3513 -0.7793 29 1 3.5509 -8.4018 -0.8877 30 1 3.5510 -8.4016 0.8923 31 1 3.4098 -11.2629 -0.9209 32 1 3.9293 -10.7580 0.7234 33 1 2.7195 -12.7725 1.2595 34 1 1.5391 -12.5212 -0.0678 35 1 1.6463 -11.2531 2.6607 36 1 0.2344 -11.5536 1.6127 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020055594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:28 Heat of formation + Delta-G solvation = -117.773566 kcal Electronic energy + Delta-G solvation = -16868.724990 eV Core-core repulsion = 13965.252114 eV Total energy + Delta-G solvation = -2903.472876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60769 -40.21174 -36.71925 -36.00076 -34.33954 -33.01899 -31.56744 -29.64702 -27.53370 -25.17179 -24.00801 -22.40998 -22.10565 -21.33499 -19.01024 -17.87575 -17.68948 -17.15641 -16.85685 -16.66671 -16.11625 -15.77625 -15.23589 -15.10365 -14.69430 -14.32778 -14.11748 -13.89798 -13.80175 -12.99484 -12.89507 -12.88821 -12.72026 -12.56524 -12.21715 -12.10037 -11.93503 -11.66252 -11.45578 -10.81684 -10.73266 -10.38927 -9.82308 -9.30831 -8.29080 -6.45984 1.43270 1.44864 1.58335 1.79851 2.29537 2.50017 2.92622 3.05751 3.35849 3.62746 3.85689 4.01617 4.03381 4.20790 4.27137 4.40206 4.48027 4.51573 4.67733 4.70867 4.86965 4.92636 5.02836 5.08672 5.11721 5.24084 5.29352 5.49408 5.69111 5.85007 5.96277 6.21055 6.39811 6.65773 6.95256 7.23755 7.53447 8.83594 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.076005 B = 0.003301 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.310756 B = 8479.646118 C = 8695.093583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.708 5.708 11 C 0.490 3.510 12 O -0.594 6.594 13 C 0.058 3.942 14 N -0.691 5.691 15 C 0.064 3.936 16 C 0.074 3.926 17 H 0.065 0.935 18 C -0.142 4.142 19 C -0.149 4.149 20 C 0.035 3.965 21 O -0.399 6.399 22 H 0.269 0.731 23 H -0.013 1.013 24 H -0.017 1.017 25 H 0.409 0.591 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.343 0.657 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.311 -22.081 -1.117 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.359 5.359 11 C 0.277 3.723 12 O -0.475 6.475 13 C -0.073 4.073 14 N -0.324 5.324 15 C -0.065 4.065 16 C 0.017 3.983 17 H 0.082 0.918 18 C -0.180 4.180 19 C -0.186 4.186 20 C -0.041 4.041 21 O -0.319 6.319 22 H 0.077 0.923 23 H 0.004 0.996 24 H 0.001 0.999 25 H 0.245 0.755 26 H 0.136 0.864 27 H 0.107 0.893 28 H 0.161 0.839 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.137 -21.954 -0.333 24.620 hybrid contribution 0.263 0.965 -0.848 1.312 sum 11.400 -20.989 -1.181 23.914 Atomic orbital electron populations 1.70153 1.08369 1.28519 1.50080 1.26116 0.95797 1.04063 0.93868 0.85075 0.79108 0.77140 0.77655 1.17473 1.20409 1.20525 1.21663 0.94358 0.90500 1.52719 0.89646 1.18525 0.88767 0.84506 0.93896 1.46167 1.11174 1.05461 1.73125 1.21512 0.90002 0.85048 0.75699 1.90645 1.19544 1.85427 1.51889 1.21758 0.93897 0.86895 1.04799 1.59996 1.19944 1.00682 1.51744 1.22240 0.93731 0.88116 1.02385 1.23158 0.91679 0.95208 0.88302 0.91753 1.23268 0.98091 0.93068 1.03525 1.23109 0.97890 0.98344 0.99256 1.23312 1.00261 0.81877 0.98663 1.88591 1.71573 1.27497 1.44252 0.92256 0.99550 0.99865 0.75506 0.86357 0.89320 0.83863 0.91298 0.90014 0.87880 0.89418 0.88215 0.89912 0.91244 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.99 42.74 29.54 68.60 2.03 44.77 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -30.64 9.28 25.60 0.24 -30.41 16 8 H 0.09 4.24 7.60 -2.91 -0.02 4.21 16 9 C 0.27 15.04 5.43 85.63 0.46 15.50 16 10 N -0.71 -30.63 5.55 -466.77 -2.59 -33.22 16 11 C 0.49 20.41 7.87 87.66 0.69 21.10 16 12 O -0.59 -31.25 16.20 -3.03 -0.05 -31.30 16 13 C 0.06 1.61 6.17 85.56 0.53 2.14 16 14 N -0.69 -19.98 6.04 -517.93 -3.13 -23.11 16 15 C 0.06 1.26 5.41 86.30 0.47 1.73 16 16 C 0.07 1.46 3.65 31.25 0.11 1.57 16 17 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 18 C -0.14 -1.68 6.57 32.05 0.21 -1.47 16 19 C -0.15 -1.72 7.02 31.86 0.22 -1.49 16 20 C 0.04 0.65 7.79 72.45 0.56 1.21 16 21 O -0.40 -10.70 10.95 -148.98 -1.63 -12.33 16 22 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 23 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 24 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 25 H 0.41 14.29 8.32 -92.71 -0.77 13.51 16 26 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.34 10.56 8.43 -89.69 -0.76 9.81 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.93 8.06 -2.39 -0.02 0.91 16 33 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -77.77 305.95 -1.58 -79.35 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.45 Total: 22.47 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 3.96 Total: 10.40 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -5.43 Total: -113.36 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.68 Total: -43.63 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -77.77 -1.58 -79.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020055594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.426 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds