Wall clock time and date at job start Mon Mar 30 2020 03:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99757 * 2 1 4 4 H 1.48497 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47708 * 300.00543 * 3 2 1 6 6 H 1.48501 * 109.47148 * 60.00495 * 3 2 1 7 7 C 1.38943 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00340 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99788 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00142 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47550 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00559 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 H 1.08991 * 109.87332 * 54.29948 * 16 15 14 18 18 C 1.54098 * 109.87706 * 175.30754 * 16 15 14 19 19 C 1.54806 * 104.19135 * 121.45144 * 18 16 15 20 20 C 1.54998 * 102.09370 * 20.87801 * 19 18 16 21 21 O 1.43748 * 109.87703 * 293.29022 * 16 15 14 22 22 H 0.96996 * 120.00021 * 359.97438 * 1 2 3 23 23 H 0.96992 * 120.00196 * 0.02562 * 9 7 2 24 24 H 1.09003 * 109.46949 * 59.99738 * 12 10 9 25 25 H 1.09005 * 109.47134 * 299.99717 * 12 10 9 26 26 H 1.00905 * 110.99607 * 303.95510 * 13 12 10 27 27 H 1.09002 * 109.47104 * 59.99767 * 14 13 12 28 28 H 1.08998 * 109.46828 * 300.00600 * 14 13 12 29 29 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 30 30 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 31 31 H 1.09003 * 110.48980 * 240.12561 * 18 16 15 32 32 H 1.09006 * 110.49242 * 2.64142 * 18 16 15 33 33 H 1.09002 * 110.91011 * 139.07868 * 19 18 16 34 34 H 1.08999 * 110.91250 * 262.64827 * 19 18 16 35 35 H 1.09000 * 110.61372 * 81.47553 * 20 19 18 36 36 H 1.08994 * 110.62396 * 204.31696 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 1.4983 -7.2708 -0.0028 15 6 2.5232 -8.4068 -0.0027 16 6 1.7938 -9.7517 -0.0045 17 1 1.0922 -9.7916 -0.8377 18 6 2.8138 -10.9007 -0.1230 19 6 2.5713 -11.7556 1.1447 20 6 1.1338 -11.3388 1.5474 21 8 1.0896 -9.9276 1.2362 22 1 -0.4850 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0005 24 1 0.6175 -4.9204 -0.8914 25 1 0.6169 -4.9209 0.8887 26 1 2.8333 -5.9120 -0.7830 27 1 0.8737 -7.3446 -0.8931 28 1 0.8730 -7.3458 0.8868 29 1 3.1475 -8.3328 0.8878 30 1 3.1487 -8.3318 -0.8922 31 1 2.6241 -11.4883 -1.0213 32 1 3.8308 -10.5087 -0.1324 33 1 2.6169 -12.8193 0.9112 34 1 3.2847 -11.5004 1.9283 35 1 0.3968 -11.8831 0.9569 36 1 0.9698 -11.5053 2.6120 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038097297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:24 Heat of formation + Delta-G solvation = -93.779484 kcal Electronic energy + Delta-G solvation = -16864.318517 eV Core-core repulsion = 13961.886102 eV Total energy + Delta-G solvation = -2902.432415 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65253 -38.21234 -35.74846 -33.84261 -32.46600 -31.83248 -31.13212 -28.06835 -25.80405 -23.97026 -22.65151 -21.50921 -21.03785 -19.16613 -17.83770 -16.72804 -16.07512 -15.96094 -15.78791 -15.16095 -14.50231 -14.20947 -13.85080 -13.60096 -13.52384 -13.39578 -12.62890 -12.19626 -12.12956 -11.88265 -11.57702 -11.50799 -11.38282 -11.05144 -10.99708 -10.85493 -10.66920 -10.31105 -10.18264 -9.83068 -9.47770 -8.39265 -7.96800 -7.90208 -6.37568 -3.78240 3.19403 3.29514 3.37156 3.68642 3.96564 4.12307 4.30658 4.34245 4.61744 4.69037 4.93068 5.01741 5.14634 5.18834 5.29565 5.32118 5.40697 5.45908 5.52119 5.61854 5.70191 5.75333 5.83745 5.89933 6.07090 6.18520 6.23943 6.34894 6.76368 7.33053 7.59424 7.77805 8.11431 8.66320 9.22382 9.59468 10.11206 10.80436 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.075119 B = 0.003288 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.654234 B = 8513.666575 C = 8714.973188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.062 3.938 15 C -0.115 4.115 16 C 0.078 3.922 17 H 0.066 0.934 18 C -0.152 4.152 19 C -0.155 4.155 20 C 0.045 3.955 21 O -0.369 6.369 22 H 0.270 0.730 23 H 0.392 0.608 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.346 0.654 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -21.168 -0.622 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.303 5.303 14 C -0.068 4.068 15 C -0.153 4.153 16 C 0.019 3.981 17 H 0.084 0.916 18 C -0.190 4.190 19 C -0.193 4.193 20 C -0.032 4.032 21 O -0.289 6.289 22 H 0.080 0.920 23 H 0.226 0.774 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.165 0.835 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.715 -20.810 0.178 20.823 hybrid contribution -0.560 0.628 -1.050 1.346 sum 0.155 -20.182 -0.873 20.201 Atomic orbital electron populations 1.69624 1.05937 1.27994 1.50868 1.25262 0.95639 0.99712 0.97437 0.85797 0.79710 0.81152 0.77664 1.19221 1.20810 1.20754 1.19761 0.93399 0.82256 1.47326 0.87886 1.41876 1.09214 1.04610 1.64513 1.19851 0.88387 0.84766 0.84245 1.90515 1.13797 1.87118 1.55336 1.21664 0.94388 0.90930 1.01193 1.60069 1.18959 1.00131 1.51103 1.21928 0.95585 0.88654 1.00595 1.21748 0.98138 0.91973 1.03422 1.22760 0.92838 0.95168 0.87292 0.91580 1.23008 1.00789 0.96774 0.98442 1.23121 0.97878 1.00214 0.98105 1.23556 0.95749 0.82648 1.01263 1.88987 1.76045 1.23865 1.39963 0.91964 0.77448 0.93982 0.89582 0.83470 0.95909 0.90492 0.90098 0.90868 0.90800 0.90072 0.90439 0.90397 0.92419 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 13.05 55.50 0.72 -24.36 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 8 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 9 N -0.57 -14.84 5.29 -10.96 -0.06 -14.90 16 10 C 0.44 10.92 7.82 -10.99 -0.09 10.83 16 11 O -0.58 -16.44 15.78 5.54 0.09 -16.36 16 12 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 13 N -0.67 -11.78 6.13 -115.06 -0.70 -12.49 16 14 C 0.06 0.87 5.60 -3.83 -0.02 0.84 16 15 C -0.11 -1.35 4.96 -26.73 -0.13 -1.48 16 16 C 0.08 0.80 3.41 -26.16 -0.09 0.71 16 17 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 18 C -0.15 -1.21 6.64 -25.21 -0.17 -1.37 16 19 C -0.16 -1.13 7.16 -24.72 -0.18 -1.30 16 20 C 0.04 0.38 7.72 38.21 0.29 0.67 16 21 O -0.37 -4.42 10.84 -35.23 -0.38 -4.81 16 22 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.39 9.84 7.90 -40.82 -0.32 9.51 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.35 6.10 8.43 -39.29 -0.33 5.77 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 1.15 7.89 -51.93 -0.41 0.74 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -32.30 303.55 -7.06 -39.36 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.62 Total: 10.93 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.65 Total: 1.63 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.04 Total: -51.74 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.29 Total: -21.16 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.30 -7.06 -39.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038097297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.424 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds