Wall clock time and date at job start Mon Mar 30 2020 03:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99757 * 2 1 4 4 H 1.48497 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47708 * 300.00543 * 3 2 1 6 6 H 1.48501 * 109.47148 * 60.00495 * 3 2 1 7 7 C 1.38943 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00340 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99788 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00142 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47550 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00559 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 H 1.08991 * 109.87332 * 54.29948 * 16 15 14 18 18 C 1.54098 * 109.87706 * 175.30754 * 16 15 14 19 19 C 1.54806 * 104.19135 * 121.45144 * 18 16 15 20 20 C 1.54998 * 102.09370 * 20.87801 * 19 18 16 21 21 O 1.43748 * 109.87703 * 293.29022 * 16 15 14 22 22 H 0.96996 * 120.00021 * 359.97438 * 1 2 3 23 23 H 0.96992 * 120.00196 * 0.02562 * 9 7 2 24 24 H 1.09003 * 109.46949 * 59.99738 * 12 10 9 25 25 H 1.09005 * 109.47134 * 299.99717 * 12 10 9 26 26 H 1.00905 * 110.99607 * 303.95510 * 13 12 10 27 27 H 1.09002 * 109.47104 * 59.99767 * 14 13 12 28 28 H 1.08998 * 109.46828 * 300.00600 * 14 13 12 29 29 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 30 30 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 31 31 H 1.09003 * 110.48980 * 240.12561 * 18 16 15 32 32 H 1.09006 * 110.49242 * 2.64142 * 18 16 15 33 33 H 1.09002 * 110.91011 * 139.07868 * 19 18 16 34 34 H 1.08999 * 110.91250 * 262.64827 * 19 18 16 35 35 H 1.09000 * 110.61372 * 81.47553 * 20 19 18 36 36 H 1.08994 * 110.62396 * 204.31696 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 1.4983 -7.2708 -0.0028 15 6 2.5232 -8.4068 -0.0027 16 6 1.7938 -9.7517 -0.0045 17 1 1.0922 -9.7916 -0.8377 18 6 2.8138 -10.9007 -0.1230 19 6 2.5713 -11.7556 1.1447 20 6 1.1338 -11.3388 1.5474 21 8 1.0896 -9.9276 1.2362 22 1 -0.4850 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0005 24 1 0.6175 -4.9204 -0.8914 25 1 0.6169 -4.9209 0.8887 26 1 2.8333 -5.9120 -0.7830 27 1 0.8737 -7.3446 -0.8931 28 1 0.8730 -7.3458 0.8868 29 1 3.1475 -8.3328 0.8878 30 1 3.1487 -8.3318 -0.8922 31 1 2.6241 -11.4883 -1.0213 32 1 3.8308 -10.5087 -0.1324 33 1 2.6169 -12.8193 0.9112 34 1 3.2847 -11.5004 1.9283 35 1 0.3968 -11.8831 0.9569 36 1 0.9698 -11.5053 2.6120 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038097297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:23 Heat of formation + Delta-G solvation = -118.317383 kcal Electronic energy + Delta-G solvation = -16865.382560 eV Core-core repulsion = 13961.886102 eV Total energy + Delta-G solvation = -2903.496458 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43369 -40.11470 -37.11593 -35.89538 -33.44035 -33.19286 -32.66347 -29.27195 -27.33953 -25.58935 -23.59106 -22.39347 -21.83394 -21.06480 -19.92032 -17.93384 -17.37850 -16.94084 -16.87184 -16.49145 -16.25162 -15.88474 -15.25823 -14.93229 -14.78119 -14.46797 -13.84892 -13.62109 -13.45055 -13.30103 -12.92702 -12.71237 -12.57588 -12.41861 -12.27976 -12.11300 -11.79886 -11.71643 -11.52582 -11.45500 -10.59530 -10.36842 -10.03142 -9.34543 -8.47656 -5.96907 1.36530 1.41685 1.56478 2.02724 2.28842 2.89391 2.99819 3.19232 3.49194 3.70507 3.90482 4.05020 4.15095 4.16898 4.29287 4.38764 4.43796 4.46233 4.54309 4.66465 4.79821 4.84670 4.85792 4.97618 5.06822 5.15631 5.21639 5.32202 5.40176 5.87783 6.04388 6.09972 6.41840 6.58585 7.11016 7.54059 8.09190 8.70153 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.075119 B = 0.003288 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.654234 B = 8513.666575 C = 8714.973188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.686 5.686 14 C 0.066 3.934 15 C -0.110 4.110 16 C 0.076 3.924 17 H 0.074 0.926 18 C -0.150 4.150 19 C -0.152 4.152 20 C 0.037 3.963 21 O -0.401 6.401 22 H 0.278 0.722 23 H 0.397 0.603 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.345 0.655 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -22.030 -1.090 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.318 5.318 14 C -0.063 4.063 15 C -0.148 4.148 16 C 0.018 3.982 17 H 0.092 0.908 18 C -0.188 4.188 19 C -0.189 4.189 20 C -0.039 4.039 21 O -0.322 6.322 22 H 0.088 0.912 23 H 0.230 0.770 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.163 0.837 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.267 -21.698 -0.288 21.701 hybrid contribution -0.457 0.846 -0.887 1.309 sum -0.191 -20.851 -1.175 20.885 Atomic orbital electron populations 1.69683 1.06889 1.29316 1.50298 1.26082 0.96580 1.02512 0.96174 0.84837 0.78006 0.76889 0.78387 1.19755 1.19434 1.19558 1.19726 0.92732 0.84003 1.49970 0.90297 1.41942 1.09354 1.04726 1.64971 1.20846 0.88249 0.86140 0.82256 1.90481 1.15818 1.87969 1.56706 1.21529 0.94090 0.88250 1.02927 1.60073 1.19307 1.01087 1.51375 1.21955 0.96057 0.87498 1.00750 1.21713 0.97639 0.92241 1.03164 1.22810 0.93411 0.94900 0.87073 0.90828 1.23016 1.00014 0.96194 0.99573 1.23124 0.96857 1.01392 0.97574 1.23771 0.96919 0.81227 1.02021 1.88949 1.76457 1.26041 1.40705 0.91236 0.76954 0.91507 0.88264 0.83662 0.94339 0.91489 0.91843 0.89629 0.88982 0.90120 0.88238 0.90983 0.91135 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.62 13.05 21.66 0.28 -50.33 16 2 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 3 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.33 -19.53 9.68 84.04 0.81 -18.71 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.57 -30.48 5.29 -306.98 -1.62 -32.11 16 10 C 0.44 21.85 7.82 87.66 0.69 22.54 16 11 O -0.62 -35.93 15.78 -3.08 -0.05 -35.98 16 12 C 0.06 2.40 6.17 85.56 0.53 2.92 16 13 N -0.69 -23.70 6.13 -517.94 -3.17 -26.87 16 14 C 0.07 1.78 5.60 86.30 0.48 2.26 16 15 C -0.11 -2.48 4.96 30.59 0.15 -2.32 16 16 C 0.08 1.44 3.41 30.97 0.11 1.55 16 17 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 18 C -0.15 -2.06 6.64 31.58 0.21 -1.85 16 19 C -0.15 -1.89 7.16 31.89 0.23 -1.66 16 20 C 0.04 0.56 7.72 72.67 0.56 1.12 16 21 O -0.40 -9.23 10.84 -148.98 -1.61 -10.84 16 22 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 23 H 0.40 20.02 7.90 -92.71 -0.73 19.29 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 26 H 0.34 12.03 8.43 -89.69 -0.76 11.28 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.94 7.89 -2.39 -0.02 1.92 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.12 7.70 -2.38 -0.02 1.10 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -69.37 303.55 -0.33 -69.69 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.41 Total: 35.25 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 4.23 Total: 5.55 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -4.51 Total: -109.31 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.66 Total: -46.82 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -69.37 -0.33 -69.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038097297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.624 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds