Wall clock time and date at job start Mon Mar 30 2020 03:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00712 * 3 2 1 5 5 H 1.48508 * 109.46650 * 30.00205 * 3 2 1 6 6 H 1.48499 * 109.47411 * 150.00125 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 9 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 9 14 14 O 1.42906 * 109.46699 * 179.97438 * 13 11 10 15 15 C 1.42898 * 113.99821 * 179.97438 * 14 13 11 16 16 C 1.53775 * 113.61616 * 249.14256 * 15 14 13 17 17 C 1.53964 * 87.02057 * 220.04854 * 16 15 14 18 18 C 1.53001 * 113.66735 * 139.93110 * 17 16 15 19 19 N 1.46898 * 109.46908 * 87.43952 * 18 17 16 20 20 C 1.53781 * 113.61333 * 151.53087 * 15 14 13 21 21 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 24 24 H 0.96999 * 119.99691 * 359.97438 * 10 9 7 25 25 H 1.09000 * 109.47161 * 299.99737 * 13 11 10 26 26 H 1.09001 * 109.46740 * 59.99879 * 13 11 10 27 27 H 1.09004 * 112.84775 * 20.33577 * 15 14 13 28 28 H 1.09002 * 113.61654 * 334.56510 * 16 15 14 29 29 H 1.09006 * 113.62094 * 105.46990 * 16 15 14 30 30 H 1.09001 * 113.53245 * 270.80813 * 17 16 15 31 31 H 1.08992 * 109.46531 * 207.44328 * 18 17 16 32 32 H 1.08998 * 109.46684 * 327.43866 * 18 17 16 33 33 H 1.00906 * 110.99773 * 56.05079 * 19 18 17 34 34 H 1.00904 * 110.99347 * 179.97438 * 19 18 17 35 35 H 1.09000 * 113.61225 * 254.52576 * 20 15 14 36 36 H 1.08996 * 113.61245 * 25.43595 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0065 13 6 2.7330 -6.0289 -0.0016 14 8 2.0184 -7.2664 -0.0015 15 6 2.8583 -8.4225 -0.0026 16 6 2.8134 -9.2153 -1.3195 17 6 2.8381 -10.4915 -0.4586 18 6 1.9160 -11.5982 -0.9743 19 7 2.6365 -12.4168 -1.9585 20 6 2.2187 -9.6491 0.6691 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0009 25 1 3.3595 -5.9708 -0.8917 26 1 3.3597 -5.9714 0.8883 27 1 3.8693 -8.2114 0.3457 28 1 1.8865 -9.0829 -1.8775 29 1 3.7024 -9.0868 -1.9371 30 1 3.8442 -10.8469 -0.2361 31 1 1.6004 -12.2257 -0.1409 32 1 1.0402 -11.1513 -1.4448 33 1 3.4873 -12.7901 -1.5648 34 1 2.0484 -13.1557 -2.3140 35 1 2.6284 -9.8704 1.6546 36 1 1.1289 -9.6356 0.6558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084450136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:36 Heat of formation + Delta-G solvation = -71.656905 kcal Electronic energy + Delta-G solvation = -16778.925179 eV Core-core repulsion = 13877.452071 eV Total energy + Delta-G solvation = -2901.473108 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73690 -38.63313 -36.30593 -34.15481 -33.76963 -32.32694 -28.72688 -26.85260 -26.05357 -25.68359 -22.52866 -21.96302 -20.02922 -19.58342 -17.20540 -16.95834 -16.11706 -15.70948 -15.67346 -15.22107 -14.93283 -14.79266 -14.48187 -13.90153 -13.58563 -12.91585 -12.59957 -12.49532 -12.07878 -11.96622 -11.62183 -11.53560 -11.18847 -10.97959 -10.88099 -10.70016 -10.57251 -10.30798 -9.40901 -9.39421 -8.99553 -8.95337 -8.73197 -7.88001 -6.15999 -4.23137 3.24735 3.29889 3.32553 3.36339 3.41841 4.08239 4.28693 4.41822 4.47560 4.62685 4.76838 4.81801 4.97078 5.19340 5.19943 5.25223 5.33660 5.47203 5.51140 5.56643 5.67339 5.72260 5.89298 6.06135 6.23647 6.77821 7.07810 7.20089 7.34906 7.45312 7.52845 7.68257 7.97353 8.61971 8.79050 9.10887 9.43378 10.94260 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.076049 B = 0.003243 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.093215 B = 8632.076414 C = 8742.743046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.712 5.712 11 C 0.498 3.502 12 O -0.536 6.536 13 C 0.043 3.957 14 O -0.347 6.347 15 C 0.056 3.944 16 C -0.141 4.141 17 C -0.108 4.108 18 C 0.073 3.927 19 N -0.851 5.851 20 C -0.130 4.130 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.390 0.610 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.338 0.662 34 H 0.340 0.660 35 H 0.071 0.929 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -20.610 -0.224 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.363 5.363 11 C 0.281 3.719 12 O -0.414 6.414 13 C -0.037 4.037 14 O -0.264 6.264 15 C -0.002 4.002 16 C -0.178 4.178 17 C -0.127 4.127 18 C -0.058 4.058 19 N -0.380 5.380 20 C -0.168 4.168 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.223 0.777 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.126 -19.953 -0.647 21.554 hybrid contribution 1.078 0.276 0.680 1.304 sum 9.204 -19.677 0.033 21.723 Atomic orbital electron populations 1.69981 1.06120 1.27325 1.48827 1.24964 0.94926 0.99474 0.94707 0.86400 0.79586 0.82601 0.78220 1.20448 1.20998 1.19756 1.21221 0.93272 0.90401 1.53286 0.91852 1.19121 0.88265 0.81727 0.97857 1.46376 1.11191 1.05702 1.72996 1.20127 0.89405 0.84046 0.78299 1.90681 1.16653 1.84647 1.49371 1.22353 0.94499 0.85135 1.01756 1.88106 1.31809 1.11982 1.94509 1.23734 0.94362 0.85046 0.97058 1.23527 1.03213 0.94290 0.96794 1.22330 0.99259 0.94164 0.96979 1.21768 0.96561 0.94311 0.93161 1.58700 1.09882 1.28928 1.40472 1.23247 1.02150 0.93806 0.97619 0.92417 0.95440 0.95459 0.77709 0.90838 0.90911 0.89657 0.89011 0.91317 0.89288 0.95472 0.90558 0.84992 0.84748 0.91047 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.76 5.43 -5.20 -0.03 6.73 16 10 N -0.71 -15.26 5.55 -61.47 -0.34 -15.60 16 11 C 0.50 10.48 7.91 -10.98 -0.09 10.39 16 12 O -0.54 -13.95 16.50 -14.35 -0.24 -14.18 16 13 C 0.04 0.65 6.26 36.01 0.23 0.87 16 14 O -0.35 -5.64 9.89 -55.14 -0.55 -6.19 16 15 C 0.06 0.65 4.29 -25.92 -0.11 0.54 16 16 C -0.14 -1.50 7.48 -25.83 -0.19 -1.69 16 17 C -0.11 -0.94 3.90 -89.71 -0.35 -1.29 16 18 C 0.07 0.59 6.62 -3.82 -0.03 0.56 16 19 N -0.85 -6.16 9.62 -10.37 -0.10 -6.26 16 20 C -0.13 -1.30 7.48 -25.92 -0.19 -1.49 16 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 0.81 7.88 -51.93 -0.41 0.40 16 28 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 33 H 0.34 1.95 8.99 -39.29 -0.35 1.60 16 34 H 0.34 1.95 9.08 -39.29 -0.36 1.59 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -33.90 308.97 -7.64 -41.54 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.61 Total: 4.59 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.18 Total: 1.13 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.30 Total: -47.43 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.78 Total: -20.37 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.90 -7.64 -41.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.114 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds