Wall clock time and date at job start Mon Mar 30 2020 03:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00712 * 3 2 1 5 5 H 1.48508 * 109.46650 * 30.00205 * 3 2 1 6 6 H 1.48499 * 109.47411 * 150.00125 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 9 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 9 14 14 O 1.42906 * 109.46699 * 179.97438 * 13 11 10 15 15 C 1.42898 * 113.99821 * 179.97438 * 14 13 11 16 16 C 1.53775 * 113.61616 * 249.14256 * 15 14 13 17 17 C 1.53964 * 87.02057 * 220.04854 * 16 15 14 18 18 C 1.53001 * 113.66735 * 139.93110 * 17 16 15 19 19 N 1.46898 * 109.46908 * 87.43952 * 18 17 16 20 20 C 1.53781 * 113.61333 * 151.53087 * 15 14 13 21 21 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 24 24 H 0.96999 * 119.99691 * 359.97438 * 10 9 7 25 25 H 1.09000 * 109.47161 * 299.99737 * 13 11 10 26 26 H 1.09001 * 109.46740 * 59.99879 * 13 11 10 27 27 H 1.09004 * 112.84775 * 20.33577 * 15 14 13 28 28 H 1.09002 * 113.61654 * 334.56510 * 16 15 14 29 29 H 1.09006 * 113.62094 * 105.46990 * 16 15 14 30 30 H 1.09001 * 113.53245 * 270.80813 * 17 16 15 31 31 H 1.08992 * 109.46531 * 207.44328 * 18 17 16 32 32 H 1.08998 * 109.46684 * 327.43866 * 18 17 16 33 33 H 1.00906 * 110.99773 * 56.05079 * 19 18 17 34 34 H 1.00904 * 110.99347 * 179.97438 * 19 18 17 35 35 H 1.09000 * 113.61225 * 254.52576 * 20 15 14 36 36 H 1.08996 * 113.61245 * 25.43595 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0065 13 6 2.7330 -6.0289 -0.0016 14 8 2.0184 -7.2664 -0.0015 15 6 2.8583 -8.4225 -0.0026 16 6 2.8134 -9.2153 -1.3195 17 6 2.8381 -10.4915 -0.4586 18 6 1.9160 -11.5982 -0.9743 19 7 2.6365 -12.4168 -1.9585 20 6 2.2187 -9.6491 0.6691 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0009 25 1 3.3595 -5.9708 -0.8917 26 1 3.3597 -5.9714 0.8883 27 1 3.8693 -8.2114 0.3457 28 1 1.8865 -9.0829 -1.8775 29 1 3.7024 -9.0868 -1.9371 30 1 3.8442 -10.8469 -0.2361 31 1 1.6004 -12.2257 -0.1409 32 1 1.0402 -11.1513 -1.4448 33 1 3.4873 -12.7901 -1.5648 34 1 2.0484 -13.1557 -2.3140 35 1 2.6284 -9.8704 1.6546 36 1 1.1289 -9.6356 0.6558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084450136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:35 Heat of formation + Delta-G solvation = -98.685594 kcal Electronic energy + Delta-G solvation = -16780.097230 eV Core-core repulsion = 13877.452071 eV Total energy + Delta-G solvation = -2902.645160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83456 -40.11713 -37.40154 -36.12861 -34.49150 -34.36708 -30.40244 -28.27915 -27.09652 -26.53859 -24.52196 -22.78144 -21.61344 -20.59138 -19.01511 -18.04383 -17.55762 -17.00551 -16.85985 -16.75151 -16.11844 -15.78834 -15.66611 -15.26025 -15.00164 -14.39306 -14.03876 -13.90934 -13.52547 -13.35440 -12.93837 -12.76239 -12.67456 -12.54503 -12.21883 -11.99364 -11.49782 -11.49099 -11.35272 -10.81249 -10.73211 -10.40796 -9.87069 -9.54791 -8.29386 -6.46540 1.43727 1.46610 1.57781 1.69257 2.05302 2.40301 3.05557 3.15971 3.43871 3.69002 3.82691 3.87550 3.97579 4.09421 4.21927 4.31833 4.37134 4.53743 4.67240 4.80325 4.88920 4.91727 5.09132 5.09427 5.21736 5.25273 5.46086 5.48276 5.66444 5.83022 6.24543 6.28733 6.63530 6.64170 6.88798 7.22693 7.46290 8.83118 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.076049 B = 0.003243 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.093215 B = 8632.076414 C = 8742.743046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.703 5.703 11 C 0.490 3.510 12 O -0.596 6.596 13 C 0.057 3.943 14 O -0.386 6.386 15 C 0.048 3.952 16 C -0.145 4.145 17 C -0.093 4.093 18 C 0.073 3.927 19 N -0.858 5.858 20 C -0.132 4.132 21 H 0.269 0.731 22 H -0.014 1.014 23 H -0.013 1.013 24 H 0.412 0.588 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.348 0.652 34 H 0.348 0.652 35 H 0.089 0.911 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.770 -21.092 0.073 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.355 5.355 11 C 0.277 3.723 12 O -0.477 6.477 13 C -0.023 4.023 14 O -0.304 6.304 15 C -0.009 4.009 16 C -0.182 4.182 17 C -0.112 4.112 18 C -0.058 4.058 19 N -0.389 5.389 20 C -0.170 4.170 21 H 0.078 0.922 22 H 0.004 0.996 23 H 0.005 0.995 24 H 0.248 0.752 25 H 0.125 0.875 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.108 0.892 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.618 -20.476 -0.352 23.545 hybrid contribution -0.034 0.328 0.571 0.660 sum 11.584 -20.148 0.219 23.242 Atomic orbital electron populations 1.70152 1.08400 1.28624 1.49965 1.26123 0.95792 1.04085 0.93824 0.85111 0.78491 0.76713 0.78611 1.19587 1.21048 1.17681 1.21622 0.94437 0.90332 1.52909 0.89435 1.18568 0.88744 0.84303 0.94095 1.46072 1.11439 1.04997 1.72950 1.21318 0.89791 0.85095 0.76061 1.90651 1.19768 1.85530 1.51742 1.22302 0.92396 0.82452 1.05108 1.88077 1.34178 1.13263 1.94926 1.24136 0.95358 0.83617 0.97814 1.23497 1.02353 0.95627 0.96754 1.22293 1.00216 0.93312 0.95361 1.21687 0.96024 0.94507 0.93559 1.58666 1.10494 1.29442 1.40318 1.23249 1.01057 0.93630 0.99068 0.92230 0.99585 0.99497 0.75181 0.87457 0.87004 0.86565 0.91610 0.90303 0.87086 0.94470 0.92407 0.83839 0.83861 0.89211 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.99 42.31 29.54 68.60 2.03 44.33 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 7 C -0.56 -30.31 9.28 25.60 0.24 -30.08 16 8 H 0.09 4.25 7.60 -2.91 -0.02 4.23 16 9 C 0.27 14.90 5.43 85.63 0.46 15.36 16 10 N -0.70 -30.11 5.55 -466.79 -2.59 -32.70 16 11 C 0.49 20.76 7.91 87.66 0.69 21.45 16 12 O -0.60 -32.41 16.50 16.03 0.26 -32.15 16 13 C 0.06 1.59 6.26 71.24 0.45 2.03 16 14 O -0.39 -12.18 9.89 -129.94 -1.28 -13.46 16 15 C 0.05 1.00 4.29 31.12 0.13 1.13 16 16 C -0.14 -2.88 7.48 31.18 0.23 -2.65 16 17 C -0.09 -1.41 3.90 -10.20 -0.04 -1.45 16 18 C 0.07 1.10 6.62 86.30 0.57 1.67 16 19 N -0.86 -10.97 9.62 -186.73 -1.80 -12.76 16 20 C -0.13 -2.43 7.48 31.12 0.23 -2.19 16 21 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 22 H -0.01 -0.88 8.14 -2.38 -0.02 -0.89 16 23 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 24 H 0.41 13.93 8.32 -92.71 -0.77 13.16 16 25 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.12 1.70 7.88 -2.39 -0.02 1.68 16 28 H 0.07 1.65 7.90 -2.39 -0.02 1.63 16 29 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.11 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 1.08 7.85 -2.39 -0.02 1.06 16 33 H 0.35 3.19 8.99 -89.69 -0.81 2.38 16 34 H 0.35 3.51 9.08 -89.69 -0.81 2.70 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -77.67 308.97 -0.96 -78.63 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -1.29 Total: 19.02 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 3.43 Total: 5.81 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -4.10 Total: -102.18 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.02 Total: -45.61 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -77.67 -0.96 -78.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.059 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds