Wall clock time and date at job start Mon Mar 30 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47337 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99966 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00344 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99956 * 179.97438 * 12 11 10 15 15 H 1.09007 * 109.82338 * 55.57096 * 14 12 11 16 16 C 1.54383 * 109.83329 * 294.58941 * 14 12 11 17 17 C 1.55303 * 102.25332 * 219.12819 * 16 14 12 18 18 C 1.54946 * 100.94046 * 34.13271 * 17 16 14 19 19 H 1.09000 * 110.31490 * 82.47195 * 18 17 16 20 20 C 1.53005 * 110.30904 * 204.63879 * 18 17 16 21 21 N 1.46900 * 109.47361 * 182.16502 * 20 18 17 22 22 O 1.43236 * 109.83328 * 176.45080 * 14 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 27 27 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 28 28 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 29 29 H 1.09004 * 110.84074 * 337.31908 * 16 14 12 30 30 H 1.08998 * 110.84575 * 100.93338 * 16 14 12 31 31 H 1.08992 * 111.12843 * 276.21533 * 17 16 14 32 32 H 1.09002 * 111.12392 * 152.04906 * 17 16 14 33 33 H 1.09001 * 109.46847 * 302.16499 * 20 18 17 34 34 H 1.08996 * 109.46946 * 62.16631 * 20 18 17 35 35 H 1.00909 * 110.99723 * 56.04634 * 21 20 18 36 36 H 1.00894 * 111.00155 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 7 5.4865 -2.6366 -0.0014 12 6 6.1604 -3.8038 -0.0020 13 8 5.5540 -4.8542 -0.0030 14 6 7.6674 -3.8039 -0.0027 15 1 8.0374 -3.2243 0.8432 16 6 8.1906 -3.1992 -1.3233 17 6 9.4098 -4.1072 -1.6413 18 6 8.9116 -5.4696 -1.0969 19 1 8.2767 -5.9621 -1.8334 20 6 10.0996 -6.3637 -0.7359 21 7 9.6079 -7.6676 -0.2713 22 8 8.1534 -5.1487 0.0801 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 3.6579 -3.1514 0.8880 27 1 3.6585 -3.1495 -0.8920 28 1 5.9715 -1.7966 -0.0002 29 1 7.4377 -3.2716 -2.1081 30 1 8.5041 -2.1652 -1.1791 31 1 10.2990 -3.7723 -1.1074 32 1 9.5935 -4.1564 -2.7146 33 1 10.7285 -6.5047 -1.6149 34 1 10.6819 -5.8920 0.0556 35 1 9.0117 -8.0966 -0.9632 36 1 10.3741 -8.2769 -0.0269 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087047135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:35 Heat of formation + Delta-G solvation = -121.922323 kcal Electronic energy + Delta-G solvation = -17330.109108 eV Core-core repulsion = 14426.456328 eV Total energy + Delta-G solvation = -2903.652780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.39643 -39.58040 -36.64343 -35.47815 -34.83304 -33.22107 -32.17326 -30.48304 -27.22894 -25.59184 -23.16651 -22.67481 -22.26829 -21.21680 -19.03383 -18.56453 -17.62392 -17.44634 -16.69814 -16.40697 -16.19527 -15.70135 -15.57511 -15.16041 -14.66725 -14.65650 -14.55119 -13.90662 -13.35770 -13.12777 -13.09350 -12.88465 -12.62328 -12.21453 -12.17240 -11.93785 -11.90340 -11.75135 -11.52783 -11.20288 -10.79060 -10.30734 -10.08207 -9.53620 -8.30261 -6.38239 1.39784 1.42987 1.54275 1.58415 2.07159 2.37492 2.87968 3.04783 3.42669 3.57135 3.73112 3.92677 4.03856 4.17821 4.27894 4.35562 4.39898 4.48721 4.61957 4.64943 4.72971 4.84676 4.95591 4.99560 5.13099 5.22416 5.39428 5.41321 5.63340 5.95596 6.21600 6.29293 6.60105 6.61567 6.70913 7.26123 7.28607 8.86823 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.052877 B = 0.004152 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.401202 B = 6742.904412 C = 7116.476040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.233 1.233 6 H -0.287 1.287 7 C -0.543 4.543 8 H 0.025 0.975 9 C -0.010 4.010 10 C 0.144 3.856 11 N -0.710 5.710 12 C 0.487 3.513 13 O -0.587 6.587 14 C 0.065 3.935 15 H 0.132 0.868 16 C -0.141 4.141 17 C -0.135 4.135 18 C 0.065 3.935 19 H 0.050 0.950 20 C 0.069 3.931 21 N -0.866 5.866 22 O -0.365 6.365 23 H 0.268 0.732 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.416 0.584 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.342 0.658 36 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.303 -4.133 -4.490 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.155 1.155 6 H -0.213 1.213 7 C -0.581 4.581 8 H 0.043 0.957 9 C -0.048 4.048 10 C 0.020 3.980 11 N -0.364 5.364 12 C 0.275 3.725 13 O -0.467 6.467 14 C 0.003 3.997 15 H 0.150 0.850 16 C -0.179 4.179 17 C -0.173 4.173 18 C 0.008 3.992 19 H 0.068 0.932 20 C -0.061 4.061 21 N -0.397 5.397 22 O -0.283 6.283 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.253 0.747 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 26.354 -4.527 -3.735 26.999 hybrid contribution -0.289 0.302 -0.813 0.914 sum 26.065 -4.224 -4.548 26.794 Atomic orbital electron populations 1.70088 1.08715 1.28505 1.51914 1.26142 0.95728 1.04067 0.93539 0.85490 0.79748 0.76947 0.79384 1.18981 1.15535 1.21268 1.21276 0.91741 0.93314 1.51775 0.95676 1.19639 0.94282 0.92586 0.98285 1.21021 0.78759 0.98621 0.99610 1.46002 1.07151 1.08949 1.74264 1.21946 0.92010 0.83310 0.75277 1.90677 1.71549 1.33407 1.51031 1.22848 0.87792 0.86236 1.02797 0.85047 1.23173 0.98101 1.02658 0.93938 1.23293 0.98334 0.91832 1.03837 1.23328 0.92313 0.96951 0.86653 0.93185 1.21935 0.94284 0.89757 1.00139 1.58549 1.25473 1.06203 1.49518 1.88634 1.70261 1.28487 1.40955 0.92297 0.94079 0.94431 0.94343 0.94110 0.74700 0.91227 0.85370 0.87542 0.87597 0.91581 0.90030 0.84518 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 2 C 0.00 0.12 5.47 84.66 0.46 0.59 16 3 Si 0.96 41.96 27.47 68.60 1.88 43.85 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 6 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.54 -31.38 9.66 25.60 0.25 -31.14 16 8 H 0.02 1.64 7.99 -2.91 -0.02 1.62 16 9 C -0.01 -0.45 4.16 29.85 0.12 -0.33 16 10 C 0.14 6.08 5.61 86.38 0.48 6.56 16 11 N -0.71 -22.69 5.53 -463.05 -2.56 -25.25 16 12 C 0.49 16.68 7.03 87.66 0.62 17.29 16 13 O -0.59 -27.00 16.52 15.75 0.26 -26.74 16 14 C 0.06 1.52 3.95 30.32 0.12 1.64 16 15 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 16 C -0.14 -2.12 6.52 31.85 0.21 -1.92 16 17 C -0.14 -1.58 6.57 32.05 0.21 -1.37 16 18 C 0.07 1.29 3.62 31.26 0.11 1.40 16 19 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 20 C 0.07 1.05 6.50 86.30 0.56 1.61 16 21 N -0.87 -15.72 9.61 -186.71 -1.79 -17.51 16 22 O -0.37 -10.43 10.23 -130.19 -1.33 -11.76 16 23 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 24 H 0.04 1.69 7.20 -2.38 -0.02 1.67 16 25 H 0.04 1.54 7.57 -2.39 -0.02 1.53 16 26 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.42 9.72 8.47 -92.71 -0.79 8.93 16 29 H 0.07 1.28 7.84 -2.38 -0.02 1.26 16 30 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 0.81 8.06 -2.39 -0.02 0.79 16 32 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.34 5.97 8.99 -89.69 -0.81 5.16 16 36 H 0.35 4.57 9.08 -89.70 -0.81 3.75 16 Total: -1.00 -81.14 301.80 -1.46 -82.60 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -1.36 Total: 20.03 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 3.15 Total: -5.66 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -4.06 Total: -102.32 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.07 Total: -38.50 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.85 kcal Total: -81.14 -1.46 -82.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087047135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.320 kcal (2) G-P(sol) polarization free energy of solvation -81.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds