Wall clock time and date at job start Mon Mar 30 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 O 1.45195 * 109.47245 * 120.00082 * 2 1 3 13 13 C 1.34231 * 117.00311 * 270.00407 * 12 2 1 14 14 O 1.20821 * 119.99670 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00187 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47270 * 179.97438 * 15 13 12 17 17 C 1.53184 * 109.54294 * 294.55577 * 16 15 13 18 18 C 1.53092 * 109.16344 * 183.15124 * 17 16 15 19 19 O 1.42901 * 109.41207 * 57.60795 * 18 17 16 20 20 C 1.42904 * 114.10117 * 298.83861 * 19 18 17 21 21 C 1.53094 * 109.41059 * 61.15928 * 20 19 18 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 25 25 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 26 26 H 1.09005 * 109.46766 * 299.99754 * 15 13 12 27 27 H 1.09004 * 109.47002 * 59.99696 * 15 13 12 28 28 H 1.08999 * 109.54066 * 54.82020 * 16 15 13 29 29 H 1.08998 * 109.52120 * 303.06039 * 17 16 15 30 30 H 1.09004 * 109.51824 * 63.24390 * 17 16 15 31 31 H 1.08997 * 109.47800 * 297.62484 * 18 17 16 32 32 H 1.08999 * 109.47538 * 177.59204 * 18 17 16 33 33 H 1.08994 * 109.47916 * 301.17946 * 20 19 18 34 34 H 1.08997 * 109.48989 * 181.14498 * 20 19 18 35 35 H 1.09000 * 109.52297 * 182.48245 * 21 20 19 36 36 H 1.09002 * 109.51933 * 62.29836 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 8 2.0141 -0.6845 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5773 3.5495 16 6 2.8636 0.4888 4.6371 17 6 3.9589 1.4824 4.2377 18 6 4.1514 2.4987 5.3663 19 8 4.4809 1.8101 6.5744 20 6 3.4724 0.9021 7.0221 21 6 3.2525 -0.1783 5.9599 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.9111 -0.5221 -4.4375 26 1 2.0087 -1.3371 3.8774 27 1 3.6872 -1.0410 3.3639 28 1 1.9176 1.0165 4.7591 29 1 4.8924 0.9463 4.0670 30 1 3.6643 2.0021 3.3259 31 1 3.2295 3.0624 5.5090 32 1 4.9592 3.1825 5.1057 33 1 2.5416 1.4450 7.1865 34 1 3.7908 0.4358 7.9544 35 1 2.4529 -0.8463 6.2799 36 1 4.1718 -0.7479 5.8242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117534646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:46 Heat of formation + Delta-G solvation = -148.238191 kcal Electronic energy + Delta-G solvation = -17893.498807 eV Core-core repulsion = 14956.412134 eV Total energy + Delta-G solvation = -2937.086673 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15030 -39.06834 -36.20746 -34.52313 -33.21962 -31.15419 -30.77041 -29.04990 -25.30963 -24.12086 -23.60353 -21.64044 -20.16238 -19.59594 -17.29277 -16.63278 -16.12616 -16.08361 -15.80238 -15.69947 -14.82323 -14.56190 -14.33535 -13.46103 -13.13604 -12.85225 -12.53596 -12.39433 -12.29226 -12.14632 -11.72629 -11.50548 -11.32137 -11.03312 -10.91184 -10.66019 -10.36761 -10.25154 -9.97534 -9.77042 -9.70192 -9.43202 -9.13922 -8.71069 -6.24868 -4.27341 2.81994 3.16383 3.28811 3.30531 3.46752 3.79123 4.24291 4.60036 4.68972 4.72238 4.92707 5.06201 5.12843 5.28226 5.30870 5.44636 5.49218 5.52915 5.63954 5.74256 5.80611 5.83434 5.99754 6.12774 6.23310 6.26274 6.31135 6.38343 6.58595 7.01285 7.10303 7.35434 7.51330 8.21564 8.58966 8.82282 9.32277 10.87332 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047339 B = 0.005032 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.334870 B = 5562.724059 C = 5697.256055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.046 0.954 4 C -0.526 4.526 5 H 0.087 0.913 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.880 3.120 9 H -0.273 1.273 10 H -0.263 1.263 11 H -0.290 1.290 12 O -0.343 6.343 13 C 0.452 3.548 14 O -0.522 6.522 15 C -0.111 4.111 16 C -0.077 4.077 17 C -0.160 4.160 18 C 0.063 3.937 19 O -0.387 6.387 20 C 0.062 3.938 21 C -0.151 4.151 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.036 0.964 25 H 0.269 0.731 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 2.713 18.207 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.137 3.863 3 H 0.063 0.937 4 C -0.563 4.563 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.709 3.291 9 H -0.200 1.200 10 H -0.188 1.188 11 H -0.217 1.217 12 O -0.258 6.258 13 C 0.296 3.704 14 O -0.413 6.413 15 C -0.149 4.149 16 C -0.096 4.096 17 C -0.197 4.197 18 C -0.013 4.013 19 O -0.306 6.306 20 C -0.015 4.015 21 C -0.189 4.189 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.942 3.073 18.025 18.309 hybrid contribution -0.991 0.720 -0.577 1.354 sum -0.049 3.793 17.448 17.855 Atomic orbital electron populations 1.22515 0.98549 1.01807 0.99769 1.20907 0.90415 0.94422 0.80598 0.93669 1.20795 1.33361 1.14867 0.87310 0.89534 1.24734 0.95661 0.96715 0.95248 1.69839 1.44681 1.40009 0.98008 0.86960 0.80752 0.83623 0.77761 1.20012 1.18767 1.21659 1.86516 1.75620 1.42897 1.20812 1.23505 0.74626 0.86064 0.86250 1.90550 1.48978 1.16975 1.84803 1.21416 1.03842 0.99241 0.90398 1.21003 0.99980 0.95510 0.93063 1.22405 0.98800 0.98210 1.00292 1.22582 1.00904 0.93889 0.83968 1.87903 1.43558 1.57592 1.41574 1.22535 0.91748 0.90454 0.96732 1.22259 1.02645 0.98723 0.95274 0.92584 0.91817 0.94477 0.92052 0.88067 0.87949 0.90164 0.91307 0.88718 0.93182 0.88945 0.93297 0.89012 0.90684 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 9.02 37.16 0.34 -3.51 16 2 C 0.19 4.79 2.15 -27.88 -0.06 4.73 16 3 H 0.05 1.20 6.21 -51.93 -0.32 0.88 16 4 C -0.53 -15.08 9.48 -34.44 -0.33 -15.41 16 5 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 6 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 7 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 8 Si 0.88 21.64 24.37 -169.99 -4.14 17.50 16 9 H -0.27 -6.45 6.88 56.52 0.39 -6.06 16 10 H -0.26 -6.38 6.52 56.52 0.37 -6.01 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 O -0.34 -7.73 9.86 -39.26 -0.39 -8.12 16 13 C 0.45 8.57 7.67 36.01 0.28 8.85 16 14 O -0.52 -10.93 13.23 -18.75 -0.25 -11.18 16 15 C -0.11 -1.47 5.29 -27.88 -0.15 -1.62 16 16 C -0.08 -0.92 1.92 -90.44 -0.17 -1.10 16 17 C -0.16 -2.05 5.13 -26.59 -0.14 -2.19 16 18 C 0.06 0.72 6.84 37.21 0.25 0.98 16 19 O -0.39 -4.65 10.77 -35.23 -0.38 -5.02 16 20 C 0.06 0.59 6.84 37.21 0.25 0.84 16 21 C -0.15 -1.41 5.42 -26.59 -0.14 -1.56 16 22 H 0.06 1.29 3.28 -51.93 -0.17 1.12 16 23 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.03 7.95 -51.93 -0.41 0.62 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.45 6.08 -51.93 -0.32 1.13 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -31.60 287.35 -5.49 -37.09 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.48 Total: -0.86 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 0.04 Total: -7.80 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.01 Total: -24.32 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.60 -5.49 -37.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117534646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.148 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds