Wall clock time and date at job start Mon Mar 30 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 O 1.45195 * 109.47245 * 120.00082 * 2 1 3 13 13 C 1.34231 * 117.00311 * 270.00407 * 12 2 1 14 14 O 1.20821 * 119.99670 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00187 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47270 * 179.97438 * 15 13 12 17 17 C 1.53184 * 109.54294 * 294.55577 * 16 15 13 18 18 C 1.53092 * 109.16344 * 183.15124 * 17 16 15 19 19 O 1.42901 * 109.41207 * 57.60795 * 18 17 16 20 20 C 1.42904 * 114.10117 * 298.83861 * 19 18 17 21 21 C 1.53094 * 109.41059 * 61.15928 * 20 19 18 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 25 25 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 26 26 H 1.09005 * 109.46766 * 299.99754 * 15 13 12 27 27 H 1.09004 * 109.47002 * 59.99696 * 15 13 12 28 28 H 1.08999 * 109.54066 * 54.82020 * 16 15 13 29 29 H 1.08998 * 109.52120 * 303.06039 * 17 16 15 30 30 H 1.09004 * 109.51824 * 63.24390 * 17 16 15 31 31 H 1.08997 * 109.47800 * 297.62484 * 18 17 16 32 32 H 1.08999 * 109.47538 * 177.59204 * 18 17 16 33 33 H 1.08994 * 109.47916 * 301.17946 * 20 19 18 34 34 H 1.08997 * 109.48989 * 181.14498 * 20 19 18 35 35 H 1.09000 * 109.52297 * 182.48245 * 21 20 19 36 36 H 1.09002 * 109.51933 * 62.29836 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 8 2.0141 -0.6845 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5773 3.5495 16 6 2.8636 0.4888 4.6371 17 6 3.9589 1.4824 4.2377 18 6 4.1514 2.4987 5.3663 19 8 4.4809 1.8101 6.5744 20 6 3.4724 0.9021 7.0221 21 6 3.2525 -0.1783 5.9599 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.9111 -0.5221 -4.4375 26 1 2.0087 -1.3371 3.8774 27 1 3.6872 -1.0410 3.3639 28 1 1.9176 1.0165 4.7591 29 1 4.8924 0.9463 4.0670 30 1 3.6643 2.0021 3.3259 31 1 3.2295 3.0624 5.5090 32 1 4.9592 3.1825 5.1057 33 1 2.5416 1.4450 7.1865 34 1 3.7908 0.4358 7.9544 35 1 2.4529 -0.8463 6.2799 36 1 4.1718 -0.7479 5.8242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117534646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:46 Heat of formation + Delta-G solvation = -169.065824 kcal Electronic energy + Delta-G solvation = -17894.401961 eV Core-core repulsion = 14956.412134 eV Total energy + Delta-G solvation = -2937.989827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.58005 -40.13945 -37.82842 -35.60222 -35.29676 -32.73940 -31.98368 -30.17718 -27.37111 -25.27778 -24.47971 -23.25372 -21.45101 -20.87817 -19.15278 -18.44342 -17.58427 -17.20717 -17.00985 -16.86330 -16.32479 -15.69623 -15.47105 -14.98871 -14.71357 -14.38215 -14.19248 -13.82057 -13.60820 -13.45196 -13.06226 -12.86187 -12.83723 -12.28283 -12.21941 -11.98199 -11.78697 -11.67697 -11.60946 -11.27567 -11.25267 -11.02827 -10.84422 -10.45545 -8.46362 -6.55337 1.21834 1.29644 1.31618 1.39062 1.97352 2.17974 2.86495 2.99334 3.60791 3.72941 3.76551 4.05242 4.11453 4.24621 4.29526 4.38102 4.41935 4.48831 4.51830 4.58205 4.70829 4.71767 4.81651 4.85707 4.89846 4.99664 5.15612 5.17716 5.24365 5.33061 5.40337 5.70381 6.15577 6.28475 6.48847 6.91759 7.10715 8.69787 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047339 B = 0.005032 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.334870 B = 5562.724059 C = 5697.256055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.192 3.808 3 H 0.030 0.970 4 C -0.541 4.541 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.931 5.931 8 Si 0.942 3.058 9 H -0.250 1.250 10 H -0.258 1.258 11 H -0.283 1.283 12 O -0.358 6.358 13 C 0.445 3.555 14 O -0.543 6.543 15 C -0.102 4.102 16 C -0.075 4.075 17 C -0.160 4.160 18 C 0.066 3.934 19 O -0.402 6.402 20 C 0.055 3.945 21 C -0.143 4.143 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.275 0.725 26 H 0.131 0.869 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 3.084 20.172 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.138 3.862 3 H 0.047 0.953 4 C -0.579 4.579 5 H 0.064 0.936 6 C -0.169 4.169 7 N -0.569 5.569 8 Si 0.767 3.233 9 H -0.176 1.176 10 H -0.183 1.183 11 H -0.210 1.210 12 O -0.274 6.274 13 C 0.290 3.710 14 O -0.435 6.435 15 C -0.139 4.139 16 C -0.093 4.093 17 C -0.198 4.198 18 C -0.010 4.010 19 O -0.321 6.321 20 C -0.022 4.022 21 C -0.181 4.181 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.134 3.433 20.017 20.310 hybrid contribution -0.558 0.553 -1.131 1.377 sum -0.692 3.986 18.886 19.315 Atomic orbital electron populations 1.22397 0.96299 1.02595 1.00694 1.20586 0.92036 0.92963 0.80611 0.95264 1.20980 1.33297 1.14023 0.89573 0.93602 1.25570 0.96904 0.99836 0.94628 1.69961 1.46157 1.41966 0.98795 0.85960 0.79886 0.79531 0.77932 1.17564 1.18302 1.20976 1.86513 1.76282 1.43478 1.21173 1.24666 0.73740 0.85980 0.86577 1.90542 1.49819 1.18041 1.85050 1.21608 1.04918 0.99942 0.87447 1.21022 0.99246 0.95033 0.94042 1.22362 0.99122 0.98724 0.99604 1.22539 1.01318 0.93599 0.83578 1.87889 1.44734 1.58177 1.41350 1.22777 0.91659 0.90212 0.97511 1.22227 1.03652 0.98813 0.93359 0.92732 0.91157 0.92336 0.91516 0.85093 0.86548 0.90958 0.91343 0.91703 0.92996 0.88317 0.92690 0.86825 0.88254 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.13 9.02 71.99 0.65 -6.49 16 2 C 0.19 9.70 2.15 29.85 0.06 9.76 16 3 H 0.03 1.57 6.21 -2.39 -0.01 1.55 16 4 C -0.54 -31.85 9.48 25.60 0.24 -31.61 16 5 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 6 C 0.03 1.76 5.45 84.65 0.46 2.22 16 7 N -0.93 -57.03 13.96 21.45 0.30 -56.73 16 8 Si 0.94 44.19 24.37 68.60 1.67 45.86 16 9 H -0.25 -10.81 6.88 99.48 0.68 -10.13 16 10 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 O -0.36 -16.13 9.86 -51.42 -0.51 -16.64 16 13 C 0.45 16.54 7.67 71.24 0.55 17.09 16 14 O -0.54 -22.57 13.23 21.98 0.29 -22.28 16 15 C -0.10 -2.48 5.29 29.85 0.16 -2.32 16 16 C -0.07 -1.64 1.92 -10.68 -0.02 -1.66 16 17 C -0.16 -4.00 5.13 30.69 0.16 -3.84 16 18 C 0.07 1.45 6.84 72.01 0.49 1.94 16 19 O -0.40 -8.84 10.77 -148.98 -1.60 -10.44 16 20 C 0.05 0.87 6.84 72.01 0.49 1.36 16 21 C -0.14 -2.19 5.42 30.68 0.17 -2.03 16 22 H 0.05 2.39 3.28 -2.39 -0.01 2.38 16 23 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.07 1.72 7.95 -2.39 -0.02 1.70 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 2.01 6.08 -2.39 -0.01 1.99 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.36 287.35 4.54 -64.82 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.98 Total: 10.98 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 3.41 Total: -15.57 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.30 Total: -56.73 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -1.82 Total: -49.36 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.86 kcal Total: -69.36 4.54 -64.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117534646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.248 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds