Wall clock time and date at job start Mon Mar 30 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47280 * 2 1 4 4 C 1.50703 * 109.46786 * 120.00383 * 2 1 3 5 5 H 1.07994 * 120.00504 * 119.99623 * 4 2 1 6 6 C 1.37880 * 119.99500 * 299.99207 * 4 2 1 7 7 N 1.31516 * 120.00398 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99883 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46846 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47123 * 120.00199 * 8 6 4 11 11 H 1.48497 * 109.47557 * 240.00371 * 8 6 4 12 12 O 1.45199 * 109.47056 * 239.99489 * 2 1 3 13 13 C 1.34226 * 116.99870 * 90.00319 * 12 2 1 14 14 O 1.20830 * 120.00222 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00267 * 179.97438 * 13 12 2 16 16 C 1.53001 * 109.47045 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.48026 * 55.02998 * 16 15 13 18 18 C 1.53095 * 109.47933 * 175.05787 * 16 15 13 19 19 C 1.53173 * 109.16329 * 177.59577 * 18 16 15 20 20 C 1.53177 * 109.04588 * 303.02563 * 19 18 16 21 21 C 1.53092 * 109.16443 * 56.96276 * 20 19 18 22 22 O 1.42901 * 109.48386 * 295.00159 * 16 15 13 23 23 H 1.09002 * 109.46986 * 59.99422 * 1 2 3 24 24 H 1.08994 * 109.47798 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47095 * 300.00545 * 1 2 3 26 26 H 0.96999 * 119.99725 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47209 * 60.00378 * 15 13 12 28 28 H 1.08997 * 109.46907 * 300.00059 * 15 13 12 29 29 H 1.09001 * 109.52141 * 297.49808 * 18 16 15 30 30 H 1.09003 * 109.52166 * 57.68881 * 18 16 15 31 31 H 1.08995 * 109.54947 * 62.88633 * 19 18 16 32 32 H 1.09003 * 109.54613 * 183.15593 * 19 18 16 33 33 H 1.09004 * 109.51365 * 297.06592 * 20 19 18 34 34 H 1.08998 * 109.53811 * 176.88037 * 20 19 18 35 35 H 1.09002 * 109.48343 * 182.42096 * 21 20 19 36 36 H 1.08999 * 109.47546 * 62.39689 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1481 -2.2858 3.6038 10 1 3.1471 -0.1858 4.8161 11 1 1.1676 -1.5866 4.8166 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0638 -2.2811 14 8 1.9983 1.2518 -2.2504 15 6 2.7193 -0.5772 -3.5491 16 6 2.8633 0.4888 -4.6371 17 1 3.5027 1.2939 -4.2749 18 6 3.4889 -0.1377 -5.8861 19 6 3.5743 0.9204 -6.9904 20 6 2.1727 1.4768 -7.2590 21 6 1.5977 2.0407 -5.9570 22 8 1.5748 1.0137 -4.9636 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7083 1.1609 3.4844 27 1 2.0105 -1.3374 -3.8773 28 1 3.6884 -1.0402 -3.3630 29 1 4.4897 -0.4992 -5.6499 30 1 2.8708 -0.9690 -6.2252 31 1 4.2322 1.7286 -6.6710 32 1 3.9671 0.4669 -7.9004 33 1 1.5281 0.6781 -7.6260 34 1 2.2320 2.2697 -8.0045 35 1 0.5835 2.3992 -6.1327 36 1 2.2205 2.8661 -5.6122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121439693.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:11 Heat of formation + Delta-G solvation = -156.091176 kcal Electronic energy + Delta-G solvation = -17834.777012 eV Core-core repulsion = 14897.349808 eV Total energy + Delta-G solvation = -2937.427204 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82500 -38.81301 -35.60822 -33.62484 -33.21085 -32.75942 -29.66332 -28.23964 -25.26925 -24.53737 -23.07853 -21.24113 -20.29103 -19.38649 -16.81319 -16.57383 -16.44711 -15.85507 -15.31801 -14.81696 -14.60368 -14.57260 -14.23306 -13.39546 -12.81362 -12.63832 -12.48412 -12.34155 -11.82754 -11.62531 -11.30534 -11.17734 -11.09930 -11.00981 -10.82570 -10.74387 -10.32801 -10.29471 -10.23885 -9.50977 -9.42025 -9.31176 -8.82501 -8.44837 -6.14111 -4.20770 3.16565 3.25964 3.32441 3.37521 3.73138 3.85195 4.36461 4.65539 4.72919 4.74859 4.94877 5.12559 5.18712 5.20851 5.41461 5.47989 5.59353 5.66422 5.71502 5.76562 5.84372 5.91204 5.99161 6.07438 6.20699 6.73244 6.97622 7.00577 7.26909 7.36987 7.66084 7.80662 8.02748 8.21498 8.73596 8.98021 9.44738 10.93365 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.056761 B = 0.004693 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.180164 B = 5964.969506 C = 6232.679093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.045 0.955 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.361 6.361 13 C 0.452 3.548 14 O -0.512 6.512 15 C -0.111 4.111 16 C 0.103 3.897 17 H 0.067 0.933 18 C -0.151 4.151 19 C -0.122 4.122 20 C -0.157 4.157 21 C 0.062 3.938 22 O -0.366 6.366 23 H 0.017 0.983 24 H 0.035 0.965 25 H 0.098 0.902 26 H 0.265 0.735 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -0.978 -17.142 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.278 6.278 13 C 0.294 3.706 14 O -0.401 6.401 15 C -0.148 4.148 16 C 0.045 3.955 17 H 0.085 0.915 18 C -0.188 4.188 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.015 4.015 22 O -0.284 6.284 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.857 -0.577 -16.841 17.286 hybrid contribution 0.403 -0.166 0.698 0.823 sum 4.260 -0.743 -16.143 16.712 Atomic orbital electron populations 1.22143 0.97642 1.00013 1.01380 1.20590 0.91388 0.93853 0.77906 0.93681 1.21089 1.32298 1.13371 0.88984 0.91312 1.24897 0.94984 0.95113 0.99063 1.69920 1.36192 1.22655 1.23969 0.86233 0.78615 0.79483 0.81868 1.19491 1.20794 1.20735 1.86468 1.76053 1.43789 1.21440 1.23152 0.75355 0.86139 0.85973 1.90600 1.48154 1.16925 1.84468 1.21391 1.04199 0.98878 0.90364 1.21833 0.85922 0.95183 0.92559 0.91544 1.22226 1.01739 0.99058 0.95807 1.21571 0.97000 0.98659 0.98671 1.22223 0.97209 1.01434 0.98622 1.22505 1.01664 0.90128 0.87160 1.88016 1.27815 1.54336 1.58253 0.96422 0.94541 0.88380 0.92518 0.87626 0.86974 0.90633 0.90811 0.91772 0.91553 0.91152 0.91144 0.89096 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.33 37.16 0.35 -3.74 16 2 C 0.22 5.99 2.56 -27.88 -0.07 5.92 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.94 8.90 -34.44 -0.31 -15.24 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.80 11.32 55.43 0.63 -25.17 16 8 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 O -0.36 -8.92 9.86 -39.25 -0.39 -9.30 16 13 C 0.45 9.79 7.81 36.01 0.28 10.08 16 14 O -0.51 -12.61 14.64 -24.05 -0.35 -12.97 16 15 C -0.11 -1.67 5.52 -27.88 -0.15 -1.83 16 16 C 0.10 1.45 2.19 -26.68 -0.06 1.39 16 17 H 0.07 1.00 7.96 -51.93 -0.41 0.58 16 18 C -0.15 -1.53 5.42 -26.59 -0.14 -1.67 16 19 C -0.12 -1.10 6.03 -26.55 -0.16 -1.26 16 20 C -0.16 -1.48 6.14 -26.59 -0.16 -1.64 16 21 C 0.06 0.76 6.84 37.20 0.25 1.02 16 22 O -0.37 -5.85 9.64 -49.63 -0.48 -6.33 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 297.36 15.07 4.48 4.48 Total: -1.00 -32.44 297.36 -7.12 -39.56 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.72 Total: -1.26 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.27 Total: -5.35 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.63 Total: -25.17 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.22 Total: -28.60 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.44 -7.12 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121439693.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.534 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds