Wall clock time and date at job start Mon Mar 30 2020 03:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99810 * 2 1 4 4 H 1.48505 * 109.47004 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47581 * 300.00801 * 3 2 1 6 6 H 1.48500 * 109.47265 * 60.00834 * 3 2 1 7 7 C 1.37880 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99576 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46824 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99831 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00447 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99538 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.46806 * 180.02562 * 13 11 10 15 15 C 1.46900 * 111.00178 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47381 * 185.21678 * 15 14 13 17 17 C 1.52996 * 115.55085 * 65.09937 * 16 15 14 18 18 O 1.42899 * 109.47361 * 65.13790 * 17 16 15 19 19 C 1.52997 * 117.49787 * 210.76930 * 16 15 14 20 20 C 1.52995 * 117.49843 * 279.42799 * 16 15 14 21 21 H 0.97000 * 119.99798 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47488 * 60.00697 * 9 7 2 23 23 H 1.08999 * 109.47624 * 299.99853 * 9 7 2 24 24 H 0.96998 * 120.00185 * 0.02562 * 10 9 7 25 25 H 1.09000 * 109.47327 * 60.00454 * 13 11 10 26 26 H 1.09000 * 109.47388 * 300.00267 * 13 11 10 27 27 H 1.00908 * 110.99773 * 303.95062 * 14 13 11 28 28 H 1.09003 * 109.47314 * 65.21000 * 15 14 13 29 29 H 1.09005 * 109.46742 * 305.22062 * 15 14 13 30 30 H 1.09008 * 109.46934 * 305.14174 * 17 16 15 31 31 H 1.09001 * 109.47378 * 185.14038 * 17 16 15 32 32 H 0.96699 * 114.00328 * 179.97438 * 18 17 16 33 33 H 1.09003 * 117.49592 * 215.00101 * 19 16 15 34 34 H 1.09001 * 117.50054 * 0.02562 * 19 16 15 35 35 H 1.09002 * 117.49764 * 359.97438 * 20 16 15 36 36 H 1.09004 * 117.50267 * 144.99812 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2123 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5614 -5.1050 -0.0006 13 6 2.7331 -6.0287 -0.0022 14 7 1.9986 -7.3010 -0.0023 15 6 2.9230 -8.4426 -0.0023 16 6 2.1276 -9.7430 -0.1336 17 6 1.3783 -9.9277 -1.4547 18 8 2.3191 -10.0355 -2.5249 19 6 2.7040 -10.9939 0.5325 20 6 1.4765 -10.3036 1.1323 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.1567 -3.4354 -0.0021 25 1 3.3604 -5.9710 0.8874 26 1 3.3592 -5.9710 -0.8925 27 1 1.3625 -7.3513 0.7794 28 1 3.4866 -8.4539 0.9307 29 1 3.6123 -8.3519 -0.8419 30 1 0.7288 -9.0694 -1.6270 31 1 0.7764 -10.8352 -1.4072 32 1 1.9135 -10.1552 -3.3945 33 1 2.5493 -11.9485 0.0296 34 1 3.6497 -10.8905 1.0647 35 1 1.6151 -9.7463 2.0587 36 1 0.5142 -10.8041 1.0240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168855196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:01 Heat of formation + Delta-G solvation = -67.832596 kcal Electronic energy + Delta-G solvation = -16937.717664 eV Core-core repulsion = 14036.410391 eV Total energy + Delta-G solvation = -2901.307273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.16972 -38.52547 -35.97100 -34.75332 -34.02454 -32.29902 -28.77214 -27.21781 -26.33896 -24.10275 -22.61464 -22.10775 -19.77649 -19.20340 -17.35376 -17.23702 -16.27105 -15.60227 -15.47941 -15.29760 -14.88876 -14.37762 -13.87315 -13.74733 -13.68024 -13.14072 -12.65020 -12.27581 -12.16795 -11.90985 -11.73993 -11.47662 -11.15243 -10.94253 -10.88928 -10.54643 -10.31214 -10.21276 -9.84187 -9.36946 -9.01434 -8.72860 -8.31713 -7.84500 -6.15978 -4.22738 3.23881 3.30801 3.33829 3.37809 3.42393 3.91365 4.20142 4.31403 4.48614 4.60612 4.72618 4.88021 5.09429 5.20123 5.29536 5.38913 5.43847 5.48284 5.57841 5.66377 5.69788 5.74853 5.86870 5.91902 5.98559 6.95432 7.33653 7.44430 7.47947 7.53835 7.56733 7.69197 7.98316 8.65897 8.80339 9.14424 9.44123 10.94304 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.053553 B = 0.003549 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.724695 B = 7886.940020 C = 7903.657895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.497 3.503 12 O -0.545 6.545 13 C 0.041 3.959 14 N -0.668 5.668 15 C 0.100 3.900 16 C -0.116 4.116 17 C 0.118 3.882 18 O -0.571 6.571 19 C -0.167 4.167 20 C -0.169 4.169 21 H 0.265 0.735 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.390 0.610 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.349 0.651 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.377 0.623 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -19.292 -0.073 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.364 5.364 11 C 0.281 3.719 12 O -0.423 6.423 13 C -0.092 4.092 14 N -0.301 5.301 15 C -0.029 4.029 16 C -0.117 4.117 17 C 0.040 3.960 18 O -0.376 6.376 19 C -0.204 4.204 20 C -0.206 4.206 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.222 0.778 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.169 0.831 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.224 0.776 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.761 -19.215 -0.258 20.062 hybrid contribution 0.781 1.013 0.492 1.370 sum 6.542 -18.202 0.234 19.343 Atomic orbital electron populations 1.69988 1.06110 1.27168 1.49034 1.24963 0.94920 0.99475 0.94733 0.86358 0.79827 0.82961 0.77740 1.19636 1.20789 1.20818 1.21274 0.93303 0.90477 1.53022 0.91853 1.19092 0.88319 0.81961 0.97697 1.46447 1.11073 1.06128 1.72763 1.20359 0.89537 0.84233 0.77782 1.90656 1.16703 1.84726 1.50168 1.21831 0.95668 0.89452 1.02221 1.59987 1.18960 0.99781 1.51347 1.21384 0.93418 0.87825 1.00282 1.21301 1.02941 0.94487 0.92949 1.21527 0.89905 0.99544 0.84980 1.86437 1.36536 1.96516 1.18119 1.22995 0.97750 0.96230 1.03469 1.23029 0.97468 1.03662 0.96411 0.92514 0.95538 0.95622 0.77789 0.92990 0.88563 0.83147 0.95377 0.89936 0.91569 0.94384 0.77616 0.88647 0.88793 0.88470 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 10 N -0.71 -15.19 5.55 -61.47 -0.34 -15.53 16 11 C 0.50 10.03 7.87 -10.98 -0.09 9.95 16 12 O -0.54 -13.28 16.20 5.56 0.09 -13.19 16 13 C 0.04 0.60 6.16 -4.97 -0.03 0.57 16 14 N -0.67 -9.52 5.94 -115.05 -0.68 -10.20 16 15 C 0.10 1.17 5.46 -3.82 -0.02 1.15 16 16 C -0.12 -1.24 1.98 -154.52 -0.31 -1.55 16 17 C 0.12 1.27 6.81 37.16 0.25 1.52 16 18 O -0.57 -6.24 13.57 -35.23 -0.48 -6.72 16 19 C -0.17 -1.49 9.94 -26.70 -0.27 -1.76 16 20 C -0.17 -1.53 9.94 -26.70 -0.27 -1.80 16 21 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.35 5.14 8.49 -39.29 -0.33 4.80 16 28 H 0.03 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 30 H 0.07 0.82 8.05 -51.92 -0.42 0.40 16 31 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.38 2.52 9.12 45.56 0.42 2.93 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -33.32 313.03 -7.00 -40.32 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.85 Total: 8.96 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.17 Total: 1.26 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.29 Total: -51.27 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.39 Total: -19.91 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.32 -7.00 -40.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168855196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.517 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds