Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08988 * 109.57745 * 2 1 4 4 C 1.53100 * 109.52150 * 120.15818 * 2 1 3 5 5 O 1.42899 * 109.41499 * 177.51601 * 4 2 1 6 6 C 1.42908 * 114.09482 * 298.83529 * 5 4 2 7 7 C 1.53096 * 109.41214 * 61.16277 * 6 5 4 8 8 C 1.53173 * 109.16177 * 302.38665 * 7 6 5 9 9 H 1.08997 * 109.54950 * 297.02648 * 8 7 6 10 10 C 1.50702 * 109.54317 * 176.85000 * 8 7 6 11 11 O 1.20830 * 119.99745 * 240.00351 * 10 8 7 12 12 O 1.34228 * 119.99901 * 59.99543 * 10 8 7 13 13 C 1.45198 * 116.99677 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.47112 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47252 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00086 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99976 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00149 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00065 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47140 * 89.99607 * 19 17 15 21 21 H 1.48500 * 109.47286 * 209.99966 * 19 17 15 22 22 H 1.48508 * 109.46811 * 329.99557 * 19 17 15 23 23 H 1.09009 * 109.47285 * 180.15870 * 1 2 3 24 24 H 1.08993 * 109.47162 * 300.16015 * 1 2 3 25 25 H 1.08999 * 109.47157 * 60.16323 * 1 2 3 26 26 H 1.08996 * 109.47674 * 297.49486 * 4 2 1 27 27 H 1.09003 * 109.48101 * 57.51698 * 4 2 1 28 28 H 1.08993 * 109.48601 * 301.17873 * 6 5 4 29 29 H 1.09001 * 109.47929 * 181.14345 * 6 5 4 30 30 H 1.08998 * 109.52422 * 62.29763 * 7 6 5 31 31 H 1.09003 * 109.51754 * 182.42000 * 7 6 5 32 32 H 1.09000 * 109.47960 * 300.00781 * 13 12 10 33 33 H 1.09009 * 109.47207 * 60.00890 * 13 12 10 34 34 H 1.09008 * 109.46850 * 300.00660 * 14 13 12 35 35 H 1.09000 * 109.46850 * 59.99892 * 14 13 12 36 36 H 0.97000 * 120.00099 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7249 1.2477 5 8 3.4694 -0.7743 1.2164 6 6 4.0043 -1.4818 0.0958 7 6 3.5715 -0.7873 -1.1981 8 6 2.0419 -0.7254 -1.2483 9 1 1.6367 -1.7369 -1.2757 10 6 1.6078 0.0250 -2.4809 11 8 0.9490 1.0323 -2.3743 12 8 1.9532 -0.4255 -3.6973 13 6 1.4999 0.3476 -4.8397 14 6 1.9862 -0.3158 -6.1298 15 6 1.5162 0.4868 -7.3155 16 1 0.9297 1.3809 -7.1641 17 6 1.8359 0.0803 -8.5936 18 7 1.4253 0.7805 -9.6284 19 14 2.8509 -1.4658 -8.8556 20 1 1.9463 -2.6373 -8.9761 21 1 3.6509 -1.3280 -10.0991 22 1 3.7626 -1.6611 -7.6996 23 1 -0.3634 -1.0277 0.0028 24 1 -0.3633 0.5163 0.8885 25 1 -0.3633 0.5113 -0.8914 26 1 1.7159 -0.1885 2.1388 27 1 1.6429 -1.7392 1.2679 28 1 3.6315 -2.5060 0.1008 29 1 5.0925 -1.4906 0.1573 30 1 3.9780 0.2238 -1.2224 31 1 3.9426 -1.3497 -2.0549 32 1 0.4107 0.3893 -4.8412 33 1 1.9021 1.3588 -4.7769 34 1 3.0755 -0.3578 -6.1285 35 1 1.5838 -1.3269 -6.1925 36 1 1.6499 0.4943 -10.5276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193010931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = -155.560198 kcal Electronic energy + Delta-G solvation = -17708.784454 eV Core-core repulsion = 14771.380275 eV Total energy + Delta-G solvation = -2937.404179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70342 -39.06329 -36.41209 -34.46801 -33.36411 -32.43344 -30.74890 -27.46803 -26.26866 -24.93978 -22.52377 -21.64711 -20.65837 -19.92710 -17.64639 -16.86403 -16.41083 -16.28904 -16.06991 -15.37819 -14.85513 -14.50037 -14.27628 -13.94678 -13.58082 -12.95202 -12.70629 -12.49555 -12.30672 -12.09352 -11.73174 -11.44750 -11.30614 -11.18904 -10.88848 -10.69951 -10.65855 -10.49398 -10.09332 -9.96890 -9.72687 -9.55179 -9.36614 -8.64886 -6.15345 -4.16737 2.44738 3.03049 3.25519 3.33034 3.36964 3.64303 4.31567 4.36092 4.48169 4.64742 4.68059 4.94950 5.07094 5.17432 5.18123 5.30996 5.35157 5.41350 5.44473 5.54967 5.67835 5.83222 5.89162 5.93831 5.94629 6.10669 6.22429 6.42163 6.79042 6.93104 7.16531 7.19026 7.59791 8.10749 8.37185 8.86229 9.44107 10.97255 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040416 B = 0.004786 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.636377 B = 5848.659902 C = 6349.077097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 H 0.089 0.911 4 C 0.067 3.933 5 O -0.383 6.383 6 C 0.063 3.937 7 C -0.149 4.149 8 C -0.080 4.080 9 H 0.106 0.894 10 C 0.461 3.539 11 O -0.509 6.509 12 O -0.360 6.360 13 C 0.082 3.918 14 C -0.009 4.009 15 C -0.528 4.528 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.881 3.119 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.263 1.263 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.023 0.977 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -6.265 20.659 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.129 4.129 3 H 0.107 0.893 4 C -0.009 4.009 5 O -0.302 6.302 6 C -0.014 4.014 7 C -0.187 4.187 8 C -0.099 4.099 9 H 0.124 0.876 10 C 0.304 3.696 11 O -0.397 6.397 12 O -0.277 6.277 13 C 0.009 3.991 14 C -0.046 4.046 15 C -0.566 4.566 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.708 3.292 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.188 1.188 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.848 -5.858 20.570 21.576 hybrid contribution 0.156 -0.724 -0.712 1.028 sum 3.004 -6.582 19.857 21.134 Atomic orbital electron populations 1.21942 0.93680 1.01916 1.03833 1.21675 0.97298 1.00947 0.92994 0.89301 1.22692 0.80874 0.99709 0.97673 1.87939 1.20367 1.76425 1.45459 1.22607 0.99452 0.94511 0.84792 1.22216 0.93121 1.03501 0.99877 1.21151 0.97735 1.00561 0.90451 0.87572 1.23392 0.77016 0.83698 0.85504 1.90599 1.36553 1.25132 1.87462 1.86478 1.70899 1.54964 1.15324 1.23385 0.99289 0.94515 0.81870 1.19621 0.97526 0.96979 0.90503 1.20842 1.35277 1.11627 0.88874 0.90671 1.24938 0.95361 0.96946 0.95737 1.69897 1.45729 1.39256 0.98590 0.86748 0.80907 0.83551 0.77971 1.20050 1.21130 1.18794 0.92969 0.92331 0.89994 0.88407 0.92910 0.92756 0.88276 0.90327 0.88998 0.91758 0.91720 0.95416 0.95855 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.92 37.16 0.33 -1.34 16 2 C -0.11 -1.21 2.05 -90.48 -0.19 -1.39 16 3 H 0.09 1.11 8.03 -51.94 -0.42 0.69 16 4 C 0.07 0.61 6.13 37.21 0.23 0.83 16 5 O -0.38 -4.07 10.77 -35.23 -0.38 -4.45 16 6 C 0.06 0.56 6.84 37.21 0.25 0.81 16 7 C -0.15 -1.59 5.35 -26.59 -0.14 -1.73 16 8 C -0.08 -0.95 2.22 -91.59 -0.20 -1.16 16 9 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 10 C 0.46 7.59 6.99 36.01 0.25 7.84 16 11 O -0.51 -9.52 13.62 -18.75 -0.26 -9.78 16 12 O -0.36 -6.72 10.15 -39.25 -0.40 -7.12 16 13 C 0.08 1.75 5.40 37.16 0.20 1.95 16 14 C -0.01 -0.21 4.42 -27.88 -0.12 -0.34 16 15 C -0.53 -15.01 9.66 -34.44 -0.33 -15.34 16 16 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 19 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 23 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.11 5.80 -51.93 -0.30 0.81 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 33 H 0.06 1.40 8.13 -51.92 -0.42 0.97 16 34 H 0.03 0.66 7.20 -51.92 -0.37 0.29 16 35 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -31.48 294.61 -6.03 -37.51 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.72 Total: -2.84 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 0.18 Total: -7.86 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.77 Total: -26.54 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.03 Total: -21.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.48 -6.03 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193010931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.055 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds