Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08988 * 109.57745 * 2 1 4 4 C 1.53100 * 109.52150 * 120.15818 * 2 1 3 5 5 O 1.42899 * 109.41499 * 177.51601 * 4 2 1 6 6 C 1.42908 * 114.09482 * 298.83529 * 5 4 2 7 7 C 1.53096 * 109.41214 * 61.16277 * 6 5 4 8 8 C 1.53173 * 109.16177 * 302.38665 * 7 6 5 9 9 H 1.08997 * 109.54950 * 297.02648 * 8 7 6 10 10 C 1.50702 * 109.54317 * 176.85000 * 8 7 6 11 11 O 1.20830 * 119.99745 * 240.00351 * 10 8 7 12 12 O 1.34228 * 119.99901 * 59.99543 * 10 8 7 13 13 C 1.45198 * 116.99677 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.47112 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47252 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00086 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99976 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00149 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00065 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47140 * 89.99607 * 19 17 15 21 21 H 1.48500 * 109.47286 * 209.99966 * 19 17 15 22 22 H 1.48508 * 109.46811 * 329.99557 * 19 17 15 23 23 H 1.09009 * 109.47285 * 180.15870 * 1 2 3 24 24 H 1.08993 * 109.47162 * 300.16015 * 1 2 3 25 25 H 1.08999 * 109.47157 * 60.16323 * 1 2 3 26 26 H 1.08996 * 109.47674 * 297.49486 * 4 2 1 27 27 H 1.09003 * 109.48101 * 57.51698 * 4 2 1 28 28 H 1.08993 * 109.48601 * 301.17873 * 6 5 4 29 29 H 1.09001 * 109.47929 * 181.14345 * 6 5 4 30 30 H 1.08998 * 109.52422 * 62.29763 * 7 6 5 31 31 H 1.09003 * 109.51754 * 182.42000 * 7 6 5 32 32 H 1.09000 * 109.47960 * 300.00781 * 13 12 10 33 33 H 1.09009 * 109.47207 * 60.00890 * 13 12 10 34 34 H 1.09008 * 109.46850 * 300.00660 * 14 13 12 35 35 H 1.09000 * 109.46850 * 59.99892 * 14 13 12 36 36 H 0.97000 * 120.00099 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7249 1.2477 5 8 3.4694 -0.7743 1.2164 6 6 4.0043 -1.4818 0.0958 7 6 3.5715 -0.7873 -1.1981 8 6 2.0419 -0.7254 -1.2483 9 1 1.6367 -1.7369 -1.2757 10 6 1.6078 0.0250 -2.4809 11 8 0.9490 1.0323 -2.3743 12 8 1.9532 -0.4255 -3.6973 13 6 1.4999 0.3476 -4.8397 14 6 1.9862 -0.3158 -6.1298 15 6 1.5162 0.4868 -7.3155 16 1 0.9297 1.3809 -7.1641 17 6 1.8359 0.0803 -8.5936 18 7 1.4253 0.7805 -9.6284 19 14 2.8509 -1.4658 -8.8556 20 1 1.9463 -2.6373 -8.9761 21 1 3.6509 -1.3280 -10.0991 22 1 3.7626 -1.6611 -7.6996 23 1 -0.3634 -1.0277 0.0028 24 1 -0.3633 0.5163 0.8885 25 1 -0.3633 0.5113 -0.8914 26 1 1.7159 -0.1885 2.1388 27 1 1.6429 -1.7392 1.2679 28 1 3.6315 -2.5060 0.1008 29 1 5.0925 -1.4906 0.1573 30 1 3.9780 0.2238 -1.2224 31 1 3.9426 -1.3497 -2.0549 32 1 0.4107 0.3893 -4.8412 33 1 1.9021 1.3588 -4.7769 34 1 3.0755 -0.3578 -6.1285 35 1 1.5838 -1.3269 -6.1925 36 1 1.6499 0.4943 -10.5276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193010931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = -175.541969 kcal Electronic energy + Delta-G solvation = -17709.650928 eV Core-core repulsion = 14771.380275 eV Total energy + Delta-G solvation = -2938.270653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92281 -40.06239 -37.85497 -35.45838 -35.38024 -33.35940 -32.66030 -28.47627 -27.38298 -26.50317 -23.32550 -23.03853 -22.39296 -20.94308 -19.28720 -18.49645 -17.68379 -17.60504 -17.01836 -16.43885 -16.29555 -15.69849 -15.45967 -15.09183 -15.04302 -14.63155 -14.07787 -13.71135 -13.31078 -13.18450 -13.08658 -12.87122 -12.55284 -12.46012 -12.37953 -12.03042 -11.82541 -11.72308 -11.59057 -11.53544 -11.43882 -11.15210 -10.83049 -10.46953 -8.36245 -6.45009 1.12592 1.37120 1.39073 1.51657 1.67171 2.33081 2.96943 2.98618 3.38977 3.60661 3.63819 3.87004 4.09133 4.13088 4.17374 4.24310 4.39627 4.45696 4.56726 4.59310 4.63916 4.76294 4.81727 4.91163 4.97678 5.05191 5.12734 5.25142 5.25836 5.31408 5.48709 5.60191 6.13272 6.25206 6.61063 6.70079 7.20336 8.79994 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040416 B = 0.004786 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.636377 B = 5848.659902 C = 6349.077097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.071 3.929 5 O -0.400 6.400 6 C 0.065 3.935 7 C -0.148 4.148 8 C -0.074 4.074 9 H 0.132 0.868 10 C 0.456 3.544 11 O -0.536 6.536 12 O -0.359 6.359 13 C 0.093 3.907 14 C -0.002 4.002 15 C -0.545 4.545 16 H 0.033 0.967 17 C 0.012 3.988 18 N -0.945 5.945 19 Si 0.956 3.044 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.243 1.243 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -9.032 22.495 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.127 4.127 3 H 0.083 0.917 4 C -0.005 4.005 5 O -0.319 6.319 6 C -0.011 4.011 7 C -0.186 4.186 8 C -0.093 4.093 9 H 0.150 0.850 10 C 0.301 3.699 11 O -0.425 6.425 12 O -0.276 6.276 13 C 0.020 3.980 14 C -0.039 4.039 15 C -0.583 4.583 16 H 0.051 0.949 17 C -0.186 4.186 18 N -0.584 5.584 19 Si 0.777 3.223 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.166 1.166 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.064 -8.622 22.438 24.379 hybrid contribution -0.294 0.250 -1.241 1.299 sum 3.770 -8.372 21.198 23.101 Atomic orbital electron populations 1.21892 0.93533 1.02814 1.02876 1.21680 0.97405 0.99958 0.93653 0.91658 1.22767 0.80260 1.00780 0.96743 1.87930 1.21142 1.76881 1.45969 1.22730 1.00435 0.94970 0.83014 1.22246 0.91787 1.03058 1.01473 1.21360 0.98902 1.01062 0.87996 0.85011 1.24460 0.76099 0.83672 0.85695 1.90602 1.37764 1.26580 1.87595 1.86468 1.71080 1.54482 1.15520 1.22924 0.98578 0.94029 0.82503 1.19452 0.97776 0.96790 0.89927 1.21120 1.35047 1.11004 0.91116 0.94871 1.25974 0.96615 1.00890 0.95130 1.70046 1.47402 1.41608 0.99363 0.85585 0.79397 0.78648 0.78622 1.18674 1.20572 1.16648 0.91123 0.90795 0.93415 0.87061 0.90690 0.90605 0.86808 0.91931 0.88558 0.92617 0.92835 0.94609 0.94635 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.92 71.98 0.64 -2.41 16 2 C -0.11 -2.18 2.05 -10.70 -0.02 -2.20 16 3 H 0.06 1.62 8.03 -2.39 -0.02 1.60 16 4 C 0.07 1.05 6.13 72.02 0.44 1.50 16 5 O -0.40 -7.31 10.77 -148.98 -1.60 -8.92 16 6 C 0.06 0.93 6.84 72.01 0.49 1.43 16 7 C -0.15 -2.82 5.35 30.68 0.16 -2.66 16 8 C -0.07 -1.63 2.22 -11.42 -0.03 -1.66 16 9 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 10 C 0.46 14.80 6.99 71.24 0.50 15.30 16 11 O -0.54 -20.50 13.62 21.95 0.30 -20.20 16 12 O -0.36 -13.10 10.15 -51.40 -0.52 -13.62 16 13 C 0.09 4.02 5.40 71.98 0.39 4.41 16 14 C 0.00 -0.10 4.42 29.85 0.13 0.04 16 15 C -0.55 -31.70 9.66 25.60 0.25 -31.45 16 16 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 17 C 0.01 0.69 5.47 84.65 0.46 1.16 16 18 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 19 Si 0.96 43.09 27.47 68.60 1.88 44.97 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 23 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.29 5.80 -2.39 -0.01 1.28 16 26 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 33 H 0.05 2.39 8.13 -2.38 -0.02 2.38 16 34 H 0.04 1.64 7.20 -2.38 -0.02 1.63 16 35 H 0.04 1.61 7.57 -2.39 -0.02 1.59 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -69.53 294.61 4.77 -64.77 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.99 Total: 8.06 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 3.42 Total: -16.55 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.30 Total: -58.51 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.83 Total: -42.74 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -69.53 4.77 -64.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193010931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.776 kcal (2) G-P(sol) polarization free energy of solvation -69.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds