Wall clock time and date at job start Mon Mar 30 2020 03:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00405 * 2 1 4 4 H 1.48506 * 109.46770 * 274.98849 * 3 2 1 5 5 H 1.48498 * 109.47114 * 34.98549 * 3 2 1 6 6 H 1.48499 * 109.47250 * 154.98821 * 3 2 1 7 7 C 1.38819 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99805 * 339.69131 * 7 2 1 9 9 N 1.36936 * 119.99728 * 159.69086 * 7 2 1 10 10 C 1.46924 * 120.63053 * 152.66139 * 9 7 2 11 11 C 1.53187 * 108.77687 * 126.41115 * 10 9 7 12 12 H 1.09004 * 109.49272 * 174.58818 * 11 10 9 13 13 N 1.46900 * 109.52400 * 294.66525 * 11 10 9 14 14 C 1.53037 * 109.31279 * 54.63936 * 11 10 9 15 15 C 1.53049 * 109.53374 * 298.62833 * 14 11 10 16 16 H 1.08993 * 109.49910 * 301.38361 * 15 14 11 17 17 C 1.53001 * 109.49724 * 181.31529 * 15 14 11 18 18 C 1.52997 * 109.47089 * 175.00279 * 17 15 14 19 19 C 1.50705 * 109.47172 * 180.02562 * 18 17 15 20 20 O 1.20825 * 119.99707 * 0.02562 * 19 18 17 21 21 O 1.34228 * 120.00003 * 179.72120 * 19 18 17 22 22 C 1.46927 * 120.62829 * 332.68153 * 9 7 2 23 23 H 0.97005 * 119.99602 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.58810 * 6.61972 * 10 9 7 25 25 H 1.09004 * 109.58454 * 246.20398 * 10 9 7 26 26 H 1.00903 * 111.00286 * 299.85387 * 13 11 10 27 27 H 1.00896 * 110.99807 * 63.81297 * 13 11 10 28 28 H 1.08998 * 109.46173 * 178.62024 * 14 11 10 29 29 H 1.08998 * 109.46754 * 58.64968 * 14 11 10 30 30 H 1.09004 * 109.47065 * 55.00446 * 17 15 14 31 31 H 1.09002 * 109.47416 * 295.00513 * 17 15 14 32 32 H 1.08998 * 109.46804 * 60.00518 * 18 17 15 33 33 H 1.09002 * 109.47183 * 300.00377 * 18 17 15 34 34 H 0.96699 * 116.99497 * 180.27283 * 21 19 18 35 35 H 1.08996 * 109.58254 * 113.80443 * 22 9 7 36 36 H 1.08998 * 109.59186 * 353.37417 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1071 -1.3949 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4118 0.5919 7 6 2.0102 -1.2023 0.0005 8 1 1.5204 -2.1083 0.3256 9 7 3.3157 -1.2394 -0.4111 10 6 4.2341 -2.2642 0.1038 11 6 4.8802 -2.9876 -1.0819 12 1 5.6345 -3.6842 -0.7157 13 7 3.8513 -3.7260 -1.8264 14 6 5.5392 -1.9594 -2.0041 15 6 4.4755 -1.0009 -2.5447 16 1 3.7159 -1.5670 -3.0837 17 6 5.1300 0.0064 -3.4922 18 6 4.0504 0.8843 -4.1281 19 6 4.6950 1.8761 -5.0620 20 8 5.8948 1.8800 -5.2046 21 8 3.9357 2.7512 -5.7399 22 6 3.8247 -0.2548 -1.3756 23 1 -0.4850 0.8401 -0.0004 24 1 3.6797 -2.9800 0.7106 25 1 5.0075 -1.7909 0.7088 26 1 3.4014 -4.4115 -1.2383 27 1 3.1746 -3.0956 -2.2297 28 1 6.0208 -2.4736 -2.8358 29 1 6.2856 -1.3954 -1.4448 30 1 5.6706 -0.5280 -4.2736 31 1 5.8250 0.6328 -2.9330 32 1 3.5099 1.4187 -3.3468 33 1 3.3554 0.2579 -4.6874 34 1 4.3940 3.3651 -6.3299 35 1 4.5648 0.3821 -0.8913 36 1 3.0003 0.3550 -1.7449 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250663336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:54 Heat of formation + Delta-G solvation = -82.773109 kcal Electronic energy + Delta-G solvation = -18485.695678 eV Core-core repulsion = 15583.740535 eV Total energy + Delta-G solvation = -2901.955143 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24997 -38.71110 -36.20159 -34.39337 -33.78726 -31.27563 -30.07798 -27.94771 -25.35709 -25.04659 -22.31058 -21.41255 -20.20120 -18.81015 -18.04909 -17.05451 -16.41859 -16.06241 -15.44099 -15.16252 -14.57145 -14.12083 -13.68911 -13.49522 -13.32143 -12.95508 -12.54902 -12.39230 -11.88581 -11.73200 -11.53054 -11.47094 -11.41371 -10.91761 -10.62626 -10.55375 -10.49630 -10.15977 -9.80667 -9.71761 -9.47551 -8.78921 -8.18121 -6.98562 -6.02697 -3.39094 2.23361 3.09186 3.21446 3.42723 3.44887 4.44420 4.84098 4.89180 5.09703 5.15110 5.22459 5.28297 5.40657 5.55855 5.62745 5.73044 5.81861 5.99273 6.03403 6.14406 6.16117 6.28021 6.34560 6.46983 6.50149 6.55445 6.62555 6.67890 6.90323 7.72699 7.88353 7.90313 8.03788 8.24305 8.85991 9.63883 10.01902 11.12981 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.010144 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.462542 B = 2759.718667 C = 3893.814762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 0.880 3.120 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.113 3.887 11 C 0.072 3.928 12 H 0.070 0.930 13 N -0.840 5.840 14 C -0.096 4.096 15 C -0.106 4.106 16 H 0.080 0.920 17 C -0.099 4.099 18 C -0.121 4.121 19 C 0.480 3.520 20 O -0.521 6.521 21 O -0.518 6.518 22 C 0.128 3.872 23 H 0.263 0.737 24 H 0.060 0.940 25 H 0.023 0.977 26 H 0.332 0.668 27 H 0.349 0.651 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.405 0.595 35 H 0.026 0.974 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.902 0.424 -7.677 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.174 4.174 3 Si 0.711 3.289 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.102 0.898 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.042 4.042 12 H 0.088 0.912 13 N -0.370 5.370 14 C -0.134 4.134 15 C -0.127 4.127 16 H 0.098 0.902 17 C -0.137 4.137 18 C -0.159 4.159 19 C 0.324 3.676 20 O -0.410 6.410 21 O -0.330 6.330 22 C 0.003 3.997 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.143 0.857 27 H 0.164 0.836 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.263 0.737 35 H 0.043 0.957 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.451 -0.012 -7.879 12.305 hybrid contribution -0.002 1.973 0.408 2.015 sum 9.450 1.961 -7.472 12.205 Atomic orbital electron populations 1.69825 1.05692 1.26596 1.52729 1.25279 0.95206 0.97511 0.99417 0.87006 0.80201 0.84759 0.76941 1.21638 1.23144 1.19510 1.18899 0.84658 0.94704 1.40775 0.89779 1.44322 1.08350 1.33155 1.46937 1.21793 0.93122 0.92073 0.94448 1.21841 0.94260 0.94272 0.93811 0.91178 1.59221 1.19748 1.19945 1.38089 1.21427 0.97074 0.96134 0.98787 1.21719 0.97993 0.96222 0.96750 0.90219 1.21455 0.96425 0.97039 0.98788 1.21588 1.00584 0.95908 0.97806 1.23800 0.85592 0.79693 0.78556 1.90691 1.16567 1.70202 1.63545 1.84601 1.45237 1.46691 1.56436 1.21482 0.97033 0.91961 0.89262 0.92702 0.92122 0.95935 0.85680 0.83602 0.92184 0.92342 0.91159 0.91351 0.87222 0.87230 0.73670 0.95663 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.87 13.97 55.49 0.78 -26.09 16 2 C 0.03 0.70 5.24 -17.43 -0.09 0.61 16 3 Si 0.88 21.68 24.35 -169.99 -4.14 17.54 16 4 H -0.29 -6.68 6.53 56.52 0.37 -6.31 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.62 6.46 56.52 0.37 -6.25 16 7 C -0.26 -6.95 10.04 -15.06 -0.15 -7.10 16 8 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 9 N -0.60 -13.42 2.35 -172.32 -0.41 -13.83 16 10 C 0.11 2.14 6.12 -3.71 -0.02 2.11 16 11 C 0.07 1.14 3.71 -67.60 -0.25 0.89 16 12 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 13 N -0.84 -13.50 9.22 -4.57 -0.04 -13.55 16 14 C -0.10 -1.48 4.89 -26.69 -0.13 -1.61 16 15 C -0.11 -1.74 2.02 -90.49 -0.18 -1.93 16 16 H 0.08 1.35 6.49 -51.93 -0.34 1.01 16 17 C -0.10 -1.45 3.97 -26.73 -0.11 -1.55 16 18 C -0.12 -1.72 5.57 -27.88 -0.16 -1.87 16 19 C 0.48 6.70 8.33 36.01 0.30 7.00 16 20 O -0.52 -8.45 16.74 -18.75 -0.31 -8.77 16 21 O -0.52 -5.97 13.42 -39.25 -0.53 -6.50 16 22 C 0.13 2.60 3.08 -3.71 -0.01 2.59 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.33 5.08 9.04 -39.29 -0.36 4.73 16 27 H 0.35 6.23 6.55 -39.29 -0.26 5.98 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 32 H 0.11 1.71 6.52 -51.93 -0.34 1.37 16 33 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.41 2.75 9.10 45.56 0.41 3.16 16 35 H 0.03 0.53 6.98 -51.93 -0.36 0.17 16 36 H 0.07 1.57 3.24 -51.93 -0.17 1.40 16 LS Contribution 282.26 15.07 4.25 4.25 Total: -1.00 -30.81 282.26 -5.60 -36.41 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.40 Total: 11.39 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.80 Total: -0.86 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.33 Total: -53.47 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.84 Total: -15.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.14 Total: 17.54 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.81 -5.60 -36.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250663336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.365 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds