Wall clock time and date at job start Mon Mar 30 2020 03:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00405 * 2 1 4 4 H 1.48506 * 109.46770 * 274.98849 * 3 2 1 5 5 H 1.48498 * 109.47114 * 34.98549 * 3 2 1 6 6 H 1.48499 * 109.47250 * 154.98821 * 3 2 1 7 7 C 1.38819 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99805 * 339.69131 * 7 2 1 9 9 N 1.36936 * 119.99728 * 159.69086 * 7 2 1 10 10 C 1.46924 * 120.63053 * 152.66139 * 9 7 2 11 11 C 1.53187 * 108.77687 * 126.41115 * 10 9 7 12 12 H 1.09004 * 109.49272 * 174.58818 * 11 10 9 13 13 N 1.46900 * 109.52400 * 294.66525 * 11 10 9 14 14 C 1.53037 * 109.31279 * 54.63936 * 11 10 9 15 15 C 1.53049 * 109.53374 * 298.62833 * 14 11 10 16 16 H 1.08993 * 109.49910 * 301.38361 * 15 14 11 17 17 C 1.53001 * 109.49724 * 181.31529 * 15 14 11 18 18 C 1.52997 * 109.47089 * 175.00279 * 17 15 14 19 19 C 1.50705 * 109.47172 * 180.02562 * 18 17 15 20 20 O 1.20825 * 119.99707 * 0.02562 * 19 18 17 21 21 O 1.34228 * 120.00003 * 179.72120 * 19 18 17 22 22 C 1.46927 * 120.62829 * 332.68153 * 9 7 2 23 23 H 0.97005 * 119.99602 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.58810 * 6.61972 * 10 9 7 25 25 H 1.09004 * 109.58454 * 246.20398 * 10 9 7 26 26 H 1.00903 * 111.00286 * 299.85387 * 13 11 10 27 27 H 1.00896 * 110.99807 * 63.81297 * 13 11 10 28 28 H 1.08998 * 109.46173 * 178.62024 * 14 11 10 29 29 H 1.08998 * 109.46754 * 58.64968 * 14 11 10 30 30 H 1.09004 * 109.47065 * 55.00446 * 17 15 14 31 31 H 1.09002 * 109.47416 * 295.00513 * 17 15 14 32 32 H 1.08998 * 109.46804 * 60.00518 * 18 17 15 33 33 H 1.09002 * 109.47183 * 300.00377 * 18 17 15 34 34 H 0.96699 * 116.99497 * 180.27283 * 21 19 18 35 35 H 1.08996 * 109.58254 * 113.80443 * 22 9 7 36 36 H 1.08998 * 109.59186 * 353.37417 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1071 -1.3949 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4118 0.5919 7 6 2.0102 -1.2023 0.0005 8 1 1.5204 -2.1083 0.3256 9 7 3.3157 -1.2394 -0.4111 10 6 4.2341 -2.2642 0.1038 11 6 4.8802 -2.9876 -1.0819 12 1 5.6345 -3.6842 -0.7157 13 7 3.8513 -3.7260 -1.8264 14 6 5.5392 -1.9594 -2.0041 15 6 4.4755 -1.0009 -2.5447 16 1 3.7159 -1.5670 -3.0837 17 6 5.1300 0.0064 -3.4922 18 6 4.0504 0.8843 -4.1281 19 6 4.6950 1.8761 -5.0620 20 8 5.8948 1.8800 -5.2046 21 8 3.9357 2.7512 -5.7399 22 6 3.8247 -0.2548 -1.3756 23 1 -0.4850 0.8401 -0.0004 24 1 3.6797 -2.9800 0.7106 25 1 5.0075 -1.7909 0.7088 26 1 3.4014 -4.4115 -1.2383 27 1 3.1746 -3.0956 -2.2297 28 1 6.0208 -2.4736 -2.8358 29 1 6.2856 -1.3954 -1.4448 30 1 5.6706 -0.5280 -4.2736 31 1 5.8250 0.6328 -2.9330 32 1 3.5099 1.4187 -3.3468 33 1 3.3554 0.2579 -4.6874 34 1 4.3940 3.3651 -6.3299 35 1 4.5648 0.3821 -0.8913 36 1 3.0003 0.3550 -1.7449 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250663336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:54 Heat of formation + Delta-G solvation = -106.309779 kcal Electronic energy + Delta-G solvation = -18486.716304 eV Core-core repulsion = 15583.740535 eV Total energy + Delta-G solvation = -2902.975769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.33033 -40.14020 -37.22629 -35.77701 -35.42818 -33.19076 -31.35495 -29.36164 -27.18443 -26.28879 -23.90422 -22.76831 -21.39967 -20.24231 -19.11523 -18.86646 -17.65900 -17.21082 -17.02253 -16.54470 -16.11070 -15.60143 -15.23328 -14.90978 -14.88691 -14.20622 -14.01520 -13.87097 -13.51413 -13.16316 -13.01333 -12.81387 -12.57191 -12.32229 -12.23614 -12.09987 -11.76930 -11.66561 -11.45152 -11.26872 -11.10120 -10.69542 -9.64508 -8.78949 -8.16354 -5.47559 1.16092 1.25857 1.40976 1.47928 2.13490 2.39508 3.06432 3.32518 3.72508 3.89465 3.92818 3.97568 4.12111 4.28442 4.38845 4.47720 4.57191 4.63672 4.69603 4.76867 4.93844 4.96046 5.00976 5.07024 5.15575 5.24743 5.37832 5.54566 5.59562 5.86439 6.12427 6.41812 6.67823 6.92370 6.98030 7.62484 8.03292 9.03176 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.010144 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.462542 B = 2759.718667 C = 3893.814762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.030 4.030 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.317 1.317 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.053 0.947 9 N -0.614 5.614 10 C 0.109 3.891 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.835 5.835 14 C -0.094 4.094 15 C -0.094 4.094 16 H 0.075 0.925 17 C -0.091 4.091 18 C -0.124 4.124 19 C 0.489 3.511 20 O -0.546 6.546 21 O -0.515 6.515 22 C 0.125 3.875 23 H 0.261 0.739 24 H 0.051 0.949 25 H 0.029 0.971 26 H 0.336 0.664 27 H 0.338 0.662 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.427 0.573 35 H 0.024 0.976 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.991 0.511 -8.931 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.225 4.225 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.246 1.246 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.071 0.929 9 N -0.338 5.338 10 C -0.018 4.018 11 C -0.035 4.035 12 H 0.113 0.887 13 N -0.364 5.364 14 C -0.132 4.132 15 C -0.115 4.115 16 H 0.093 0.907 17 C -0.129 4.129 18 C -0.162 4.162 19 C 0.333 3.667 20 O -0.437 6.437 21 O -0.329 6.329 22 C 0.000 4.000 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.288 0.712 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.589 0.071 -9.165 14.775 hybrid contribution -0.656 1.869 0.801 2.137 sum 10.934 1.940 -8.364 13.902 Atomic orbital electron populations 1.69948 1.07259 1.27051 1.55713 1.25820 0.95703 1.00498 1.00490 0.86086 0.78635 0.80898 0.77800 1.19323 1.24628 1.19139 1.18821 0.86356 0.93377 1.38704 0.92888 1.44405 1.07410 1.34233 1.47794 1.21990 0.92602 0.91300 0.95910 1.21850 0.94378 0.94613 0.92617 0.88739 1.59255 1.19523 1.19571 1.38033 1.21449 0.96714 0.95749 0.99285 1.21544 0.98166 0.96391 0.95367 0.90680 1.21357 0.96298 0.96606 0.98612 1.21573 1.00637 0.96209 0.97769 1.23606 0.85083 0.79667 0.78325 1.90688 1.17497 1.71000 1.64529 1.84546 1.45165 1.46670 1.56530 1.21517 0.96481 0.91836 0.90150 0.93032 0.92996 0.95259 0.85300 0.84800 0.90335 0.91491 0.89754 0.91684 0.88703 0.85825 0.71154 0.95776 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 13.97 21.65 0.30 -57.83 16 2 C -0.03 -1.69 5.24 84.86 0.44 -1.25 16 3 Si 0.94 45.07 24.35 68.60 1.67 46.74 16 4 H -0.27 -11.76 6.53 99.48 0.65 -11.11 16 5 H -0.32 -15.86 7.11 99.48 0.71 -15.15 16 6 H -0.27 -12.51 6.46 99.48 0.64 -11.87 16 7 C -0.24 -13.06 10.04 84.04 0.84 -12.21 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.61 -26.81 2.35 -699.08 -1.64 -28.45 16 10 C 0.11 3.93 6.12 86.36 0.53 4.46 16 11 C 0.08 2.29 3.71 44.99 0.17 2.45 16 12 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 13 N -0.84 -25.17 9.22 -168.36 -1.55 -26.72 16 14 C -0.09 -2.56 4.89 30.62 0.15 -2.41 16 15 C -0.09 -2.87 2.02 -10.71 -0.02 -2.89 16 16 H 0.07 2.38 6.49 -2.39 -0.02 2.37 16 17 C -0.09 -2.40 3.97 30.59 0.12 -2.28 16 18 C -0.12 -3.25 5.57 29.85 0.17 -3.08 16 19 C 0.49 12.46 8.33 71.24 0.59 13.05 16 20 O -0.55 -16.43 16.74 21.97 0.37 -16.06 16 21 O -0.52 -10.51 13.42 -51.40 -0.69 -11.20 16 22 C 0.12 4.88 3.08 86.36 0.27 5.14 16 23 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 24 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.34 9.77 9.04 -89.69 -0.81 8.96 16 27 H 0.34 11.63 6.55 -89.70 -0.59 11.04 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 31 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 32 H 0.09 2.80 6.52 -2.39 -0.02 2.78 16 33 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.43 4.57 9.10 -74.06 -0.67 3.90 16 35 H 0.02 0.96 6.98 -2.39 -0.02 0.94 16 36 H 0.05 2.29 3.24 -2.39 -0.01 2.28 16 Total: -1.00 -65.97 282.26 0.64 -65.34 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -1.08 Total: 27.20 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 3.26 Total: 0.99 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -2.89 Total: -113.00 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.32 Total: -27.26 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.67 Total: 46.74 kcal Total: -65.97 0.64 -65.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250663336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.973 kcal (2) G-P(sol) polarization free energy of solvation -65.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds