Wall clock time and date at job start Mon Mar 30 2020 03:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48506 * 109.47140 * 270.00361 * 3 2 1 5 5 H 1.48505 * 109.46729 * 30.00099 * 3 2 1 6 6 H 1.48491 * 109.47162 * 150.00155 * 3 2 1 7 7 C 1.38949 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99976 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99996 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99874 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00173 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99906 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46761 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99419 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46813 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46667 * 60.00480 * 15 14 13 17 17 O 1.42895 * 109.47467 * 300.00592 * 15 14 13 18 18 C 1.52994 * 109.47225 * 179.97438 * 15 14 13 19 19 C 1.53782 * 113.61734 * 185.00086 * 18 15 14 20 20 C 1.53781 * 87.08260 * 220.02231 * 19 18 15 21 21 C 1.53786 * 87.17350 * 25.39213 * 20 19 18 22 22 H 0.97003 * 119.99663 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00170 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.46726 * 60.00159 * 12 10 9 25 25 H 1.08998 * 109.47188 * 300.00100 * 12 10 9 26 26 H 1.00896 * 111.00154 * 303.94895 * 13 12 10 27 27 H 1.08993 * 109.47220 * 60.00110 * 14 13 12 28 28 H 1.08993 * 109.47118 * 299.99922 * 14 13 12 29 29 H 0.96709 * 113.99599 * 299.99661 * 17 15 14 30 30 H 1.09002 * 112.84929 * 316.20161 * 18 15 14 31 31 H 1.09001 * 113.61250 * 105.47049 * 19 18 15 32 32 H 1.08997 * 113.61225 * 334.56890 * 19 18 15 33 33 H 1.09002 * 113.61445 * 139.98212 * 20 19 18 34 34 H 1.09002 * 113.61408 * 270.79943 * 20 19 18 35 35 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 36 36 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0022 13 7 6.0503 -3.7557 -0.0026 14 6 7.5189 -3.7948 -0.0031 15 6 7.9902 -5.2504 -0.0029 16 1 7.6129 -5.7546 -0.8927 17 8 7.4964 -5.9108 1.1641 18 6 9.5196 -5.2913 -0.0041 19 6 10.0978 -6.7110 -0.1267 20 6 11.1567 -6.2839 0.9035 21 6 10.1400 -5.2443 1.4042 22 1 -0.4850 0.8401 0.0004 23 1 3.8648 -0.3634 -0.0014 24 1 5.9247 -1.8564 0.8872 25 1 5.9234 -1.8572 -0.8927 26 1 5.6755 -4.2719 0.7790 27 1 7.8961 -3.2910 0.8867 28 1 7.8954 -3.2908 -0.8931 29 1 7.7927 -5.5148 1.9952 30 1 9.9615 -4.5782 -0.7000 31 1 10.5103 -6.9308 -1.1114 32 1 9.4256 -7.4890 0.2350 33 1 11.3887 -7.0562 1.6369 34 1 12.0478 -5.8432 0.4566 35 1 9.4794 -5.6206 2.1852 36 1 10.5867 -4.2818 1.6536 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316260172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:15 Heat of formation + Delta-G solvation = -65.946984 kcal Electronic energy + Delta-G solvation = -17167.177522 eV Core-core repulsion = 14265.952015 eV Total energy + Delta-G solvation = -2901.225507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89743 -38.40717 -36.45936 -34.71936 -33.80478 -31.64187 -30.01973 -27.01147 -25.94919 -24.66653 -23.10616 -21.66191 -19.51902 -19.33895 -18.34451 -17.17772 -16.26390 -16.13539 -15.59999 -15.09940 -14.71173 -14.64011 -13.75806 -13.52412 -13.29195 -13.11814 -12.71920 -12.64573 -12.26792 -12.06014 -11.77674 -11.66116 -11.38272 -11.14386 -11.00665 -10.77333 -10.58458 -10.40231 -9.96915 -9.83826 -9.55196 -8.54493 -8.16856 -8.09746 -6.29068 -3.80346 3.03375 3.07967 3.15794 3.76761 3.97023 4.11825 4.24302 4.35954 4.45376 4.54183 4.58610 4.86638 5.06073 5.19011 5.19649 5.26226 5.42341 5.45491 5.51261 5.61062 5.62451 5.64222 5.69949 5.82373 5.87712 5.95495 6.11376 6.22654 7.11884 7.53377 7.60634 7.67731 8.17059 8.62393 8.97406 9.44726 9.85698 10.84213 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.058848 B = 0.003848 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.691439 B = 7275.347007 C = 7568.789394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.562 6.562 12 C 0.048 3.952 13 N -0.665 5.665 14 C 0.029 3.971 15 C 0.117 3.883 16 H 0.110 0.890 17 O -0.554 6.554 18 C -0.143 4.143 19 C -0.132 4.132 20 C -0.141 4.141 21 C -0.143 4.143 22 H 0.273 0.727 23 H 0.370 0.630 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.357 0.643 27 H 0.027 0.973 28 H 0.078 0.922 29 H 0.367 0.633 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.804 -5.459 1.915 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.443 6.443 12 C -0.085 4.085 13 N -0.299 5.299 14 C -0.101 4.101 15 C 0.058 3.942 16 H 0.127 0.873 17 O -0.360 6.360 18 C -0.163 4.163 19 C -0.170 4.170 20 C -0.178 4.178 21 C -0.180 4.180 22 H 0.084 0.916 23 H 0.203 0.797 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.177 0.823 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.215 0.785 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.830 -6.505 0.795 22.792 hybrid contribution 1.095 2.246 1.232 2.786 sum 22.925 -4.259 2.027 23.406 Atomic orbital electron populations 1.69629 1.05635 1.27450 1.49536 1.25039 0.95495 0.97958 0.97719 0.86660 0.79716 0.84043 0.78881 1.19608 1.20205 1.19574 1.19445 0.79272 0.96655 1.47955 0.86276 1.42204 1.07518 1.06131 1.67295 1.19727 0.88221 0.84566 0.83930 1.90577 1.69411 1.30923 1.53436 1.21718 0.95070 0.90648 1.01089 1.60007 1.05501 1.12310 1.52041 1.22658 0.89460 0.97119 1.00848 1.21862 0.90960 0.91954 0.89418 0.87258 1.86674 1.75231 1.58343 1.15709 1.23309 0.95989 0.98646 0.98313 1.22901 0.97996 0.96726 0.99332 1.22759 0.97031 0.98948 0.99090 1.22985 0.98588 0.99626 0.96827 0.91639 0.79727 0.93974 0.89607 0.82267 0.95479 0.90403 0.78469 0.88569 0.91662 0.89361 0.91552 0.90433 0.89689 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.09 13.96 55.50 0.77 -25.32 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 7 C -0.30 -8.77 10.16 -14.94 -0.15 -8.93 16 8 H 0.12 3.92 7.39 -52.48 -0.39 3.54 16 9 N -0.59 -14.39 5.09 -10.96 -0.06 -14.44 16 10 C 0.45 10.52 7.82 -10.98 -0.09 10.44 16 11 O -0.56 -15.62 15.78 5.54 0.09 -15.53 16 12 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 13 N -0.66 -10.77 6.13 -115.06 -0.70 -11.48 16 14 C 0.03 0.34 5.38 -3.82 -0.02 0.32 16 15 C 0.12 1.25 3.28 -26.73 -0.09 1.16 16 16 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 17 O -0.55 -6.40 12.04 -35.23 -0.42 -6.83 16 18 C -0.14 -1.18 3.59 -89.71 -0.32 -1.50 16 19 C -0.13 -1.06 7.57 -25.92 -0.20 -1.26 16 20 C -0.14 -0.99 8.08 -25.92 -0.21 -1.20 16 21 C -0.14 -1.04 7.36 -25.82 -0.19 -1.23 16 22 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.36 6.21 7.82 -39.29 -0.31 5.90 16 27 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.37 3.16 6.86 45.56 0.31 3.47 16 30 H 0.10 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.59 5.87 -51.93 -0.30 0.29 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -33.22 297.75 -6.67 -39.89 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -4.73 Total: 14.76 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.39 Total: -0.37 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.01 Total: -51.24 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.34 Total: -22.36 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.22 -6.67 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316260172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.056 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds