Wall clock time and date at job start Mon Mar 30 2020 03:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48506 * 109.47140 * 270.00361 * 3 2 1 5 5 H 1.48505 * 109.46729 * 30.00099 * 3 2 1 6 6 H 1.48491 * 109.47162 * 150.00155 * 3 2 1 7 7 C 1.38949 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99976 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99996 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99874 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00173 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99906 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46761 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99419 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46813 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46667 * 60.00480 * 15 14 13 17 17 O 1.42895 * 109.47467 * 300.00592 * 15 14 13 18 18 C 1.52994 * 109.47225 * 179.97438 * 15 14 13 19 19 C 1.53782 * 113.61734 * 185.00086 * 18 15 14 20 20 C 1.53781 * 87.08260 * 220.02231 * 19 18 15 21 21 C 1.53786 * 87.17350 * 25.39213 * 20 19 18 22 22 H 0.97003 * 119.99663 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00170 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.46726 * 60.00159 * 12 10 9 25 25 H 1.08998 * 109.47188 * 300.00100 * 12 10 9 26 26 H 1.00896 * 111.00154 * 303.94895 * 13 12 10 27 27 H 1.08993 * 109.47220 * 60.00110 * 14 13 12 28 28 H 1.08993 * 109.47118 * 299.99922 * 14 13 12 29 29 H 0.96709 * 113.99599 * 299.99661 * 17 15 14 30 30 H 1.09002 * 112.84929 * 316.20161 * 18 15 14 31 31 H 1.09001 * 113.61250 * 105.47049 * 19 18 15 32 32 H 1.08997 * 113.61225 * 334.56890 * 19 18 15 33 33 H 1.09002 * 113.61445 * 139.98212 * 20 19 18 34 34 H 1.09002 * 113.61408 * 270.79943 * 20 19 18 35 35 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 36 36 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0022 13 7 6.0503 -3.7557 -0.0026 14 6 7.5189 -3.7948 -0.0031 15 6 7.9902 -5.2504 -0.0029 16 1 7.6129 -5.7546 -0.8927 17 8 7.4964 -5.9108 1.1641 18 6 9.5196 -5.2913 -0.0041 19 6 10.0978 -6.7110 -0.1267 20 6 11.1567 -6.2839 0.9035 21 6 10.1400 -5.2443 1.4042 22 1 -0.4850 0.8401 0.0004 23 1 3.8648 -0.3634 -0.0014 24 1 5.9247 -1.8564 0.8872 25 1 5.9234 -1.8572 -0.8927 26 1 5.6755 -4.2719 0.7790 27 1 7.8961 -3.2910 0.8867 28 1 7.8954 -3.2908 -0.8931 29 1 7.7927 -5.5148 1.9952 30 1 9.9615 -4.5782 -0.7000 31 1 10.5103 -6.9308 -1.1114 32 1 9.4256 -7.4890 0.2350 33 1 11.3887 -7.0562 1.6369 34 1 12.0478 -5.8432 0.4566 35 1 9.4794 -5.6206 2.1852 36 1 10.5867 -4.2818 1.6536 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316260172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:15 Heat of formation + Delta-G solvation = -93.888823 kcal Electronic energy + Delta-G solvation = -17168.389172 eV Core-core repulsion = 14265.952015 eV Total energy + Delta-G solvation = -2902.437156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66836 -40.19593 -37.37990 -36.15854 -35.54600 -33.75619 -31.05086 -28.39766 -26.58841 -26.13558 -24.32727 -22.51748 -21.30925 -20.31865 -20.07485 -18.19712 -17.53952 -17.24721 -16.90688 -16.52370 -15.96463 -15.82279 -15.21065 -14.90507 -14.67407 -14.46237 -14.06077 -13.86874 -13.32903 -13.18205 -13.09712 -12.82824 -12.58535 -12.41951 -12.06401 -11.97953 -11.76277 -11.52369 -11.35384 -11.03678 -10.69886 -10.37077 -10.25918 -9.31009 -8.42039 -6.03438 1.29913 1.35996 1.44912 1.94331 2.23018 2.70013 3.13979 3.32921 3.56058 3.68466 3.80964 3.89161 4.00248 4.14912 4.22856 4.33311 4.44245 4.50654 4.55040 4.75269 4.85446 4.91686 4.93607 5.04535 5.10918 5.17716 5.41689 5.51984 5.64244 5.89734 6.05512 6.38486 6.59158 6.84277 6.87056 7.38504 7.95728 8.75867 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.058848 B = 0.003848 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.691439 B = 7275.347007 C = 7568.789394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.968 3.032 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.230 1.230 7 C -0.332 4.332 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.616 6.616 12 C 0.062 3.938 13 N -0.688 5.688 14 C 0.033 3.967 15 C 0.120 3.880 16 H 0.087 0.913 17 O -0.573 6.573 18 C -0.137 4.137 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.140 4.140 22 H 0.280 0.720 23 H 0.390 0.610 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.346 0.654 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.379 0.621 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.434 -3.103 2.161 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.153 1.153 7 C -0.461 4.461 8 H 0.071 0.929 9 N -0.231 5.231 10 C 0.234 3.766 11 O -0.500 6.500 12 C -0.070 4.070 13 N -0.322 5.322 14 C -0.096 4.096 15 C 0.061 3.939 16 H 0.105 0.895 17 O -0.381 6.381 18 C -0.156 4.156 19 C -0.175 4.175 20 C -0.174 4.174 21 C -0.177 4.177 22 H 0.089 0.911 23 H 0.226 0.774 24 H 0.095 0.905 25 H 0.133 0.867 26 H 0.165 0.835 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.229 0.771 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.505 -4.151 1.044 25.862 hybrid contribution -0.098 1.353 1.149 1.778 sum 25.408 -2.798 2.193 25.655 Atomic orbital electron populations 1.69816 1.08220 1.29322 1.50224 1.26162 0.96503 1.02839 0.95945 0.85323 0.79458 0.76455 0.79994 1.18085 1.19937 1.15344 1.19019 0.81582 0.94946 1.50535 0.92887 1.42015 1.05775 1.07580 1.67779 1.21062 0.91144 0.83293 0.81131 1.90554 1.71459 1.32935 1.55101 1.21648 0.89394 0.91978 1.03971 1.60010 1.08421 1.11763 1.51976 1.22746 0.86469 0.97930 1.02435 1.21790 0.92584 0.91152 0.88412 0.89490 1.86646 1.75833 1.58981 1.16651 1.23268 0.93928 0.98930 0.99472 1.22901 0.98298 0.96369 0.99961 1.22762 0.97056 0.98932 0.98657 1.22996 0.98426 1.00219 0.96092 0.91088 0.77379 0.90544 0.86712 0.83535 0.93308 0.88997 0.77063 0.87313 0.91259 0.90955 0.91412 0.89357 0.89683 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.06 13.96 21.66 0.30 -56.75 16 2 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 3 Si 0.97 38.87 27.74 68.60 1.90 40.77 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 7 C -0.33 -19.81 10.16 84.04 0.85 -18.96 16 8 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 9 N -0.59 -28.30 5.09 -306.97 -1.56 -29.86 16 10 C 0.45 20.73 7.82 87.66 0.69 21.42 16 11 O -0.62 -35.59 15.78 -3.07 -0.05 -35.63 16 12 C 0.06 1.94 6.17 85.56 0.53 2.47 16 13 N -0.69 -21.15 6.13 -517.93 -3.17 -24.32 16 14 C 0.03 0.67 5.38 86.30 0.46 1.14 16 15 C 0.12 2.38 3.28 30.59 0.10 2.48 16 16 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 17 O -0.57 -12.84 12.04 -148.98 -1.79 -14.63 16 18 C -0.14 -1.93 3.59 -10.21 -0.04 -1.96 16 19 C -0.14 -2.02 7.57 31.12 0.24 -1.79 16 20 C -0.14 -1.60 8.08 31.12 0.25 -1.35 16 21 C -0.14 -1.64 7.36 31.18 0.23 -1.41 16 22 H 0.28 15.53 8.31 -92.71 -0.77 14.75 16 23 H 0.39 15.32 5.76 -92.71 -0.53 14.79 16 24 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.35 11.87 7.82 -89.70 -0.70 11.17 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.38 6.02 6.86 -74.05 -0.51 5.51 16 30 H 0.11 1.29 8.13 -2.39 -0.02 1.27 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.29 7.96 -2.39 -0.02 1.27 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.99 5.87 -2.39 -0.01 0.98 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -77.73 297.75 -1.30 -79.02 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -0.70 Total: 39.81 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 3.78 Total: 1.60 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.43 Total: -110.93 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -1.84 Total: -50.27 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.90 Total: 40.77 kcal Total: -77.73 -1.30 -79.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316260172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.868 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds