Wall clock time and date at job start Mon Mar 30 2020 03:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99821 * 2 1 4 4 H 1.48504 * 109.46737 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46999 * 300.00169 * 3 2 1 6 6 H 1.48493 * 109.47304 * 60.00478 * 3 2 1 7 7 C 1.37875 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00029 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47375 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00350 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99802 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00367 * 180.02562 * 11 10 9 14 14 N 1.46897 * 109.47586 * 180.02562 * 13 11 10 15 15 C 1.46897 * 111.00381 * 180.02562 * 14 13 11 16 16 H 1.09002 * 110.43506 * 34.29708 * 15 14 13 17 17 C 1.54892 * 110.48670 * 271.75606 * 15 14 13 18 18 C 1.54885 * 102.75046 * 203.24431 * 17 15 14 19 19 C 1.54273 * 104.19251 * 37.94548 * 18 17 15 20 20 C 1.53869 * 106.59806 * 336.38783 * 19 18 17 21 21 H 1.09003 * 110.03349 * 240.71458 * 20 19 18 22 22 O 1.42900 * 110.03471 * 119.28818 * 20 19 18 23 23 H 0.97006 * 120.00205 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46997 * 60.00699 * 9 7 2 25 25 H 1.08995 * 109.47425 * 300.00870 * 9 7 2 26 26 H 0.97000 * 120.00357 * 0.02562 * 10 9 7 27 27 H 1.09003 * 109.46848 * 60.00123 * 13 11 10 28 28 H 1.09004 * 109.47281 * 300.00470 * 13 11 10 29 29 H 1.00898 * 110.99658 * 303.95721 * 14 13 11 30 30 H 1.08999 * 110.75198 * 321.56483 * 17 15 14 31 31 H 1.09002 * 110.75241 * 84.92827 * 17 15 14 32 32 H 1.08998 * 110.48617 * 156.61766 * 18 17 15 33 33 H 1.08993 * 110.48686 * 279.26817 * 18 17 15 34 34 H 1.09002 * 110.03192 * 95.67784 * 19 18 17 35 35 H 1.09003 * 110.02871 * 217.05501 * 19 18 17 36 36 H 0.96702 * 114.00163 * 62.82797 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7331 -6.0288 0.0006 14 7 1.9986 -7.3010 0.0005 15 6 2.9231 -8.4426 0.0016 16 1 3.8179 -8.2071 0.5778 17 6 3.3000 -8.8365 -1.4482 18 6 3.7264 -10.3181 -1.3001 19 6 2.7425 -10.8926 -0.2599 20 6 2.2318 -9.7002 0.5676 21 1 2.4978 -9.8323 1.6164 22 8 0.8141 -9.5821 0.4328 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8895 26 1 3.1567 -3.4355 -0.0002 27 1 3.3596 -5.9706 0.8906 28 1 3.3599 -5.9714 -0.8894 29 1 1.3619 -7.3509 0.7815 30 1 2.4380 -8.7467 -2.1093 31 1 4.1303 -8.2298 -1.8098 32 1 3.6247 -10.8412 -2.2509 33 1 4.7508 -10.3854 -0.9341 34 1 1.9090 -11.3813 -0.7645 35 1 3.2562 -11.6042 0.3866 36 1 0.3221 -10.3427 0.7711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323136892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:25 Heat of formation + Delta-G solvation = -125.336805 kcal Electronic energy + Delta-G solvation = -17211.118843 eV Core-core repulsion = 14307.318000 eV Total energy + Delta-G solvation = -2903.800843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.63862 -39.77142 -36.34803 -36.01664 -34.92720 -34.32711 -30.21498 -28.73154 -28.51296 -26.01832 -24.18681 -21.72100 -21.27659 -20.99985 -18.97498 -18.35060 -17.65354 -17.09490 -16.76502 -16.35791 -16.08658 -15.79800 -15.38888 -14.99289 -14.49893 -14.42834 -14.07863 -13.92615 -13.39016 -13.17611 -12.89743 -12.74204 -12.43353 -12.23146 -12.21654 -11.97120 -11.71873 -11.45767 -11.31146 -10.81749 -10.79901 -10.69330 -9.82508 -9.28492 -8.29113 -6.46115 1.43216 1.44851 1.58343 1.79502 2.29561 2.50284 3.05647 3.11923 3.54313 3.70649 3.74641 3.99462 4.15079 4.32798 4.40055 4.44394 4.49806 4.54184 4.79590 4.86198 5.04958 5.09017 5.12310 5.17750 5.23784 5.29901 5.47799 5.49372 5.69852 5.84865 6.09406 6.39365 6.65538 6.95089 7.02425 7.23608 7.53095 8.83521 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.059437 B = 0.003776 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.972754 B = 7412.959506 C = 7714.636918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.709 5.709 11 C 0.491 3.509 12 O -0.593 6.593 13 C 0.055 3.945 14 N -0.673 5.673 15 C 0.080 3.920 16 H 0.078 0.922 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.149 4.149 20 C 0.093 3.907 21 H 0.069 0.931 22 O -0.574 6.574 23 H 0.269 0.731 24 H -0.016 1.016 25 H -0.014 1.014 26 H 0.409 0.591 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.347 0.653 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.509 -20.750 1.251 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.360 5.360 11 C 0.278 3.722 12 O -0.473 6.473 13 C -0.077 4.077 14 N -0.307 5.307 15 C -0.029 4.029 16 H 0.096 0.904 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.187 4.187 20 C 0.034 3.966 21 H 0.087 0.913 22 O -0.381 6.381 23 H 0.077 0.923 24 H 0.002 0.998 25 H 0.004 0.996 26 H 0.244 0.756 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.167 0.833 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 11.588 -20.231 0.318 23.317 hybrid contribution 0.132 0.613 1.068 1.239 sum 11.720 -19.618 1.386 22.894 Atomic orbital electron populations 1.70156 1.08366 1.28518 1.50053 1.26115 0.95800 1.04058 0.93848 0.85070 0.79090 0.77121 0.77666 1.17498 1.20486 1.20414 1.21657 0.94351 0.90497 1.52765 0.89667 1.18528 0.88770 0.84503 0.93910 1.46172 1.11148 1.05462 1.73172 1.21480 0.89985 0.84996 0.75725 1.90649 1.19487 1.85406 1.51797 1.21855 0.94004 0.87425 1.04435 1.60005 1.18934 0.99729 1.51994 1.22708 0.93763 0.88792 0.97654 0.90416 1.22565 1.00498 0.96775 0.95614 1.22272 0.99463 0.94446 0.99382 1.22853 1.00085 0.97360 0.98364 1.22693 0.81319 0.94360 0.98243 0.91276 1.86649 1.17881 1.47458 1.86144 0.92252 0.99790 0.99602 0.75566 0.89840 0.86484 0.83313 0.92906 0.90957 0.90995 0.89895 0.91017 0.89375 0.76214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.99 42.79 29.54 68.60 2.03 44.81 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.75 9.28 25.60 0.24 -30.52 16 8 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 9 C 0.27 15.09 5.43 85.63 0.46 15.56 16 10 N -0.71 -30.94 5.55 -466.80 -2.59 -33.53 16 11 C 0.49 20.73 7.87 87.66 0.69 21.42 16 12 O -0.59 -31.48 16.20 -3.05 -0.05 -31.53 16 13 C 0.05 1.57 6.02 85.56 0.52 2.08 16 14 N -0.67 -20.02 5.53 -490.03 -2.71 -22.73 16 15 C 0.08 1.68 3.12 45.99 0.14 1.82 16 16 H 0.08 1.30 7.85 -2.39 -0.02 1.28 16 17 C -0.12 -2.29 6.55 31.88 0.21 -2.08 16 18 C -0.12 -1.61 6.83 31.67 0.22 -1.39 16 19 C -0.15 -1.95 6.61 31.32 0.21 -1.74 16 20 C 0.09 1.64 4.07 31.32 0.13 1.77 16 21 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 22 O -0.57 -12.89 11.91 -148.98 -1.77 -14.66 16 23 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 24 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H 0.41 14.47 8.32 -92.71 -0.77 13.70 16 27 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 28 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 29 H 0.35 11.55 7.43 -89.70 -0.67 10.88 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 1.00 7.96 -2.39 -0.02 0.98 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.39 5.14 9.11 -74.06 -0.67 4.46 16 Total: -1.00 -77.40 302.48 -2.56 -79.95 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -1.02 Total: 27.29 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 3.27 Total: 7.45 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.01 Total: -113.31 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -1.82 Total: -46.19 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -77.40 -2.56 -79.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323136892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.385 kcal (2) G-P(sol) polarization free energy of solvation -77.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds