Wall clock time and date at job start Mon Mar 30 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50703 * 109.47466 * 299.99910 * 4 2 1 6 6 H 1.07997 * 119.99722 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00416 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47184 * 90.00039 * 9 7 5 11 11 H 1.48498 * 109.47171 * 210.00013 * 9 7 5 12 12 H 1.48508 * 109.46868 * 330.00146 * 9 7 5 13 13 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 14 14 N 1.46905 * 109.46913 * 60.00285 * 13 2 1 15 15 C 1.46898 * 110.99716 * 180.02562 * 14 13 2 16 16 H 1.08999 * 110.65681 * 31.82146 * 15 14 13 17 17 C 1.54599 * 110.73502 * 155.00029 * 15 14 13 18 18 O 1.44040 * 102.55032 * 93.18580 * 17 15 14 19 19 N 1.41460 * 107.84453 * 26.89448 * 18 17 15 20 20 C 1.34768 * 111.67642 * 341.24633 * 19 18 17 21 21 O 1.21286 * 126.24459 * 181.17946 * 20 19 18 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 29 29 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 30 30 H 0.97001 * 120.00306 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 32 32 H 1.08996 * 109.46952 * 300.00302 * 13 2 1 33 33 H 1.00895 * 110.99885 * 303.95122 * 14 13 2 34 34 H 1.08995 * 110.79981 * 211.45208 * 17 15 14 35 35 H 1.09000 * 110.79136 * 334.73239 * 17 15 14 36 36 H 0.97008 * 124.16147 * 161.24198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4798 6 1 0.9171 0.8675 2.3806 7 6 1.8710 -0.4816 3.7320 8 7 2.6279 -1.5504 3.8527 9 14 1.2490 0.3994 5.2572 10 1 -0.0591 -0.1754 5.6620 11 1 2.2275 0.2287 6.3611 12 1 1.0840 1.8452 4.9610 13 6 2.0401 -0.7213 -1.2492 14 7 1.5504 -0.0287 -2.4487 15 6 2.0209 -0.6952 -3.6703 16 1 2.1208 -1.7685 -3.5086 17 6 1.0683 -0.4063 -4.8531 18 8 1.6748 0.7458 -5.4692 19 7 3.0599 0.7109 -5.1843 20 6 3.3330 -0.0942 -4.1387 21 8 4.4278 -0.3008 -3.6594 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2493 29 1 3.1300 -0.7217 1.2491 30 1 2.8628 -1.8814 4.7337 31 1 3.1301 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 0.5439 0.0414 -2.4402 34 1 1.0445 -1.2477 -5.5454 35 1 0.0655 -0.1740 -4.4944 36 1 3.7308 1.2056 -5.6807 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393782769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:44 Heat of formation + Delta-G solvation = -31.965914 kcal Electronic energy + Delta-G solvation = -17961.674705 eV Core-core repulsion = 15061.922728 eV Total energy + Delta-G solvation = -2899.751977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.68865 -37.56074 -37.52190 -34.36427 -32.23036 -31.70224 -29.29062 -26.88310 -26.35293 -25.04473 -23.73265 -22.44112 -21.02667 -18.50875 -17.77354 -16.90114 -16.25851 -15.99631 -15.77026 -14.99561 -14.61392 -14.12472 -13.87688 -13.77710 -13.61918 -12.91661 -12.62095 -12.45571 -11.99120 -11.66464 -11.44364 -10.99726 -10.90809 -10.76828 -10.52041 -10.39019 -10.15686 -10.09028 -9.70673 -9.24466 -9.02925 -8.83675 -8.36512 -8.30311 -5.94655 -3.95055 1.97277 2.31832 3.34301 3.41158 3.44042 3.73847 4.04216 4.29692 4.37950 4.50897 4.91343 5.09740 5.27787 5.41066 5.63546 5.70020 5.93684 6.17297 6.26991 6.47490 6.51784 6.63024 6.71709 6.77672 6.82431 7.00052 7.19535 7.23482 7.29923 7.44524 7.71469 7.86095 7.93874 8.05305 8.48900 9.10188 9.67729 11.17008 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046447 B = 0.004975 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.690230 B = 5626.772525 C = 5819.793514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.117 4.117 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.663 5.663 15 C 0.025 3.975 16 H 0.095 0.905 17 C 0.030 3.970 18 O -0.139 6.139 19 N -0.588 5.588 20 C 0.531 3.469 21 O -0.500 6.500 22 H 0.032 0.968 23 H 0.041 0.959 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.013 0.987 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.349 0.651 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 1.877 -17.900 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.062 4.062 14 N -0.299 5.299 15 C -0.090 4.090 16 H 0.113 0.887 17 C -0.048 4.048 18 O -0.147 6.147 19 N -0.295 5.295 20 C 0.315 3.685 21 O -0.373 6.373 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.171 0.829 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -3.432 2.224 -17.580 18.049 hybrid contribution -0.708 -0.331 0.738 1.075 sum -4.141 1.894 -16.841 17.446 Atomic orbital electron populations 1.21787 0.96002 1.00424 1.00501 1.20635 0.94699 0.96210 0.94207 1.21610 1.00012 0.95669 1.00141 1.19129 0.96315 0.94952 0.90025 1.21218 1.30848 1.11911 0.90576 0.92283 1.25014 0.95372 0.95129 0.99052 1.69967 1.37125 1.23280 1.23303 0.86662 0.78486 0.80134 0.83118 1.20839 1.21371 1.19911 1.22328 1.00807 0.94636 0.88445 1.60414 1.16682 1.53185 0.99625 1.22911 0.93742 0.99618 0.92715 0.88745 1.24134 0.97711 0.89297 0.93620 1.90890 1.03558 1.44899 1.75314 1.47707 0.97261 1.50142 1.34418 1.20878 0.90566 0.78563 0.78451 1.90835 1.26553 1.61959 1.57910 0.94898 0.93951 0.91522 0.92548 0.94046 0.94027 0.96838 0.96516 0.93148 0.90585 0.95133 0.82864 0.89620 0.86413 0.71452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 7.89 37.16 0.29 -2.00 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.12 -2.32 8.06 37.16 0.30 -2.02 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.88 7.65 -34.44 -0.26 -14.14 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.13 4.51 -3.82 -0.02 1.12 16 14 N -0.66 -9.09 5.58 -106.52 -0.59 -9.68 16 15 C 0.02 0.28 3.42 -67.52 -0.23 0.05 16 16 H 0.09 1.03 7.82 -51.93 -0.41 0.62 16 17 C 0.03 0.24 7.81 38.00 0.30 0.54 16 18 O -0.14 -1.42 12.49 -11.40 -0.14 -1.56 16 19 N -0.59 -6.45 7.31 31.49 0.23 -6.22 16 20 C 0.53 7.42 8.33 -10.48 -0.09 7.33 16 21 O -0.50 -8.99 18.03 5.55 0.10 -8.89 16 22 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 25 H 0.06 1.18 6.62 -51.93 -0.34 0.84 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.35 4.13 6.11 -39.29 -0.24 3.89 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.12 0.73 7.58 -51.93 -0.39 0.33 16 36 H 0.44 3.75 8.96 -40.82 -0.37 3.39 16 LS Contribution 294.13 15.07 4.43 4.43 Total: -1.00 -32.59 294.13 -5.49 -38.08 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.22 Total: 1.63 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.01 Total: -8.15 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.37 Total: -42.15 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.04 Total: -10.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.59 -5.49 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393782769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.109 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds