Wall clock time and date at job start Mon Mar 30 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50703 * 109.47466 * 299.99910 * 4 2 1 6 6 H 1.07997 * 119.99722 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00416 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47184 * 90.00039 * 9 7 5 11 11 H 1.48498 * 109.47171 * 210.00013 * 9 7 5 12 12 H 1.48508 * 109.46868 * 330.00146 * 9 7 5 13 13 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 14 14 N 1.46905 * 109.46913 * 60.00285 * 13 2 1 15 15 C 1.46898 * 110.99716 * 180.02562 * 14 13 2 16 16 H 1.08999 * 110.65681 * 31.82146 * 15 14 13 17 17 C 1.54599 * 110.73502 * 155.00029 * 15 14 13 18 18 O 1.44040 * 102.55032 * 93.18580 * 17 15 14 19 19 N 1.41460 * 107.84453 * 26.89448 * 18 17 15 20 20 C 1.34768 * 111.67642 * 341.24633 * 19 18 17 21 21 O 1.21286 * 126.24459 * 181.17946 * 20 19 18 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 29 29 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 30 30 H 0.97001 * 120.00306 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 32 32 H 1.08996 * 109.46952 * 300.00302 * 13 2 1 33 33 H 1.00895 * 110.99885 * 303.95122 * 14 13 2 34 34 H 1.08995 * 110.79981 * 211.45208 * 17 15 14 35 35 H 1.09000 * 110.79136 * 334.73239 * 17 15 14 36 36 H 0.97008 * 124.16147 * 161.24198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4798 6 1 0.9171 0.8675 2.3806 7 6 1.8710 -0.4816 3.7320 8 7 2.6279 -1.5504 3.8527 9 14 1.2490 0.3994 5.2572 10 1 -0.0591 -0.1754 5.6620 11 1 2.2275 0.2287 6.3611 12 1 1.0840 1.8452 4.9610 13 6 2.0401 -0.7213 -1.2492 14 7 1.5504 -0.0287 -2.4487 15 6 2.0209 -0.6952 -3.6703 16 1 2.1208 -1.7685 -3.5086 17 6 1.0683 -0.4063 -4.8531 18 8 1.6748 0.7458 -5.4692 19 7 3.0599 0.7109 -5.1843 20 6 3.3330 -0.0942 -4.1387 21 8 4.4278 -0.3008 -3.6594 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2493 29 1 3.1300 -0.7217 1.2491 30 1 2.8628 -1.8814 4.7337 31 1 3.1301 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 0.5439 0.0414 -2.4402 34 1 1.0445 -1.2477 -5.5454 35 1 0.0655 -0.1740 -4.4944 36 1 3.7308 1.2056 -5.6807 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393782769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:44 Heat of formation + Delta-G solvation = -57.486016 kcal Electronic energy + Delta-G solvation = -17962.781340 eV Core-core repulsion = 15061.922728 eV Total energy + Delta-G solvation = -2900.858612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64448 -39.05356 -38.59046 -35.76648 -34.19219 -32.62164 -30.46121 -28.78201 -27.89508 -26.56771 -24.62672 -24.26187 -22.02349 -19.74404 -19.11982 -18.33575 -17.88440 -16.97134 -16.83738 -16.54527 -16.01234 -15.44175 -15.27796 -14.94133 -14.71217 -14.49080 -14.18380 -13.90692 -13.67500 -13.09980 -12.74429 -12.69887 -12.47655 -12.28459 -12.25022 -12.16444 -11.90794 -11.41877 -11.30327 -10.86765 -10.76545 -10.50077 -10.13330 -9.50536 -8.13312 -6.20747 1.14048 1.26756 1.41357 1.42661 1.53068 2.44352 2.87945 3.07030 3.20726 3.43842 3.54953 4.12093 4.16110 4.27236 4.36800 4.50978 4.56544 4.72187 4.80189 4.92794 5.07802 5.19987 5.21606 5.51479 5.53386 5.59128 5.60806 5.63848 5.78869 5.86299 5.91143 5.93882 6.35188 6.40597 6.94593 6.96041 7.46814 8.99236 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046447 B = 0.004975 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.690230 B = 5626.772525 C = 5819.793514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.054 4.054 3 C -0.108 4.108 4 C 0.038 3.962 5 C -0.513 4.513 6 H 0.068 0.932 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.263 1.263 13 C 0.081 3.919 14 N -0.663 5.663 15 C 0.022 3.978 16 H 0.103 0.897 17 C 0.037 3.963 18 O -0.141 6.141 19 N -0.575 5.575 20 C 0.519 3.481 21 O -0.553 6.553 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.018 0.982 27 H 0.068 0.932 28 H -0.011 1.011 29 H -0.024 1.024 30 H 0.259 0.741 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.365 0.635 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 2.894 -19.392 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.054 4.054 3 C -0.165 4.165 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.187 1.187 13 C -0.048 4.048 14 N -0.300 5.300 15 C -0.093 4.093 16 H 0.121 0.879 17 C -0.039 4.039 18 O -0.150 6.150 19 N -0.281 5.281 20 C 0.304 3.696 21 O -0.430 6.430 22 H 0.093 0.907 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.007 0.993 29 H -0.005 1.005 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.189 0.811 34 H 0.135 0.865 35 H 0.164 0.836 36 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -5.975 3.276 -19.121 20.299 hybrid contribution 0.073 -0.652 1.115 1.293 sum -5.902 2.624 -18.007 19.130 Atomic orbital electron populations 1.21692 0.93607 1.01005 1.01614 1.20485 0.96519 0.95606 0.92811 1.21514 0.98567 0.95749 1.00654 1.19022 0.93758 0.94320 0.92861 1.21612 1.30256 1.11928 0.91336 0.91376 1.25943 0.95669 0.95916 1.02672 1.70120 1.38796 1.25124 1.24030 0.85554 0.78012 0.79340 0.78803 1.19752 1.21491 1.18729 1.21919 0.98836 0.94921 0.89076 1.60184 1.17702 1.53082 0.99066 1.22987 0.93555 0.99730 0.92983 0.87932 1.24428 0.97621 0.89643 0.92245 1.90902 1.02500 1.46118 1.75435 1.47624 0.98270 1.48811 1.33363 1.21299 0.90673 0.78828 0.78769 1.90806 1.28607 1.63903 1.59716 0.90748 0.93664 0.93372 0.93944 0.96227 0.91340 0.99262 1.00527 0.93192 0.93794 0.94585 0.81097 0.86528 0.83582 0.70363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 7.89 71.98 0.57 -3.47 16 2 C -0.05 -2.12 0.60 -52.18 -0.03 -2.15 16 3 C -0.11 -4.22 8.06 71.98 0.58 -3.64 16 4 C 0.04 1.99 4.04 29.85 0.12 2.12 16 5 C -0.51 -28.52 7.65 25.60 0.20 -28.33 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.08 2.78 4.51 86.30 0.39 3.17 16 14 N -0.66 -16.54 5.58 -490.92 -2.74 -19.28 16 15 C 0.02 0.45 3.42 45.04 0.15 0.60 16 16 H 0.10 2.02 7.82 -2.39 -0.02 2.00 16 17 C 0.04 0.43 7.81 72.53 0.57 1.00 16 18 O -0.14 -2.38 12.49 -38.47 -0.48 -2.86 16 19 N -0.58 -11.50 7.31 -172.68 -1.26 -12.76 16 20 C 0.52 14.05 8.33 87.99 0.73 14.79 16 21 O -0.55 -20.45 18.03 -3.05 -0.05 -20.50 16 22 H 0.07 1.84 6.57 -2.39 -0.02 1.82 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 25 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 2.29 7.60 -2.39 -0.02 2.28 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 33 H 0.36 7.06 6.11 -89.70 -0.55 6.51 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.15 0.95 7.58 -2.39 -0.02 0.94 16 36 H 0.45 7.04 8.96 -92.70 -0.83 6.20 16 Total: -1.00 -73.74 294.13 1.23 -72.51 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -0.28 Total: 9.89 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 3.74 Total: -15.76 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.72 Total: -89.96 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.54 Total: -23.37 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -73.74 1.23 -72.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393782769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.025 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds