Wall clock time and date at job start Mon Mar 30 2020 03:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 14 14 C 1.50699 * 109.47482 * 174.99860 * 11 10 9 15 15 O 1.21286 * 119.99857 * 100.00182 * 14 11 10 16 16 N 1.34781 * 120.00160 * 279.99980 * 14 11 10 17 17 C 1.47061 * 136.05652 * 359.63441 * 16 14 11 18 18 C 1.53757 * 87.89003 * 152.95839 * 17 16 14 19 19 C 1.52994 * 114.08977 * 139.77909 * 18 17 16 20 20 O 1.42897 * 109.47387 * 91.55840 * 19 18 17 21 21 C 1.47066 * 136.05566 * 179.97438 * 16 14 11 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.00899 * 111.00057 * 299.99390 * 13 11 10 28 28 H 1.00898 * 110.99947 * 63.95776 * 13 11 10 29 29 H 1.09000 * 113.46612 * 267.68921 * 17 16 14 30 30 H 1.09006 * 113.47134 * 38.12654 * 17 16 14 31 31 H 1.08996 * 114.57271 * 272.66505 * 18 17 16 32 32 H 1.09003 * 109.46961 * 211.56543 * 19 18 17 33 33 H 1.09006 * 109.46814 * 331.55704 * 19 18 17 34 34 H 0.96696 * 114.00124 * 180.02562 * 20 19 18 35 35 H 1.09001 * 113.47085 * 321.87148 * 21 16 14 36 36 H 1.09000 * 113.46562 * 92.31304 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9147 -2.0475 0.8418 13 7 6.0410 -2.0514 -1.2553 14 6 6.0536 -4.0522 0.1236 15 8 6.4277 -4.6513 -0.8624 16 7 6.0872 -4.6524 1.3300 17 6 5.7415 -4.2773 2.7093 18 6 5.4875 -5.7674 2.9905 19 6 5.9894 -6.2395 4.3565 20 8 4.9406 -6.1142 5.3188 21 6 6.4913 -5.9685 1.8470 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6810 0.8905 25 1 3.6577 -3.1507 0.8897 26 1 3.6584 -3.1504 -0.8902 27 1 5.7175 -2.5803 -2.0514 28 1 5.7717 -1.0820 -1.3314 29 1 6.5807 -3.8666 3.2707 30 1 4.8448 -3.6616 2.7800 31 1 4.4768 -6.1058 2.7624 32 1 6.2983 -7.2827 4.2894 33 1 6.8384 -5.6282 4.6627 34 1 5.1887 -6.3958 6.2100 35 1 6.2332 -6.7937 1.1831 36 1 7.5282 -6.0040 2.1809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691559047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:46 Heat of formation + Delta-G solvation = -85.968214 kcal Electronic energy + Delta-G solvation = -17554.518496 eV Core-core repulsion = 14652.424804 eV Total energy + Delta-G solvation = -2902.093693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.59651 -39.50213 -37.27652 -37.07854 -34.83874 -32.13205 -31.85599 -28.71858 -26.99981 -26.92877 -24.76755 -22.17565 -21.58253 -20.05721 -19.03173 -18.39615 -18.18714 -17.29289 -16.85138 -16.27296 -16.02647 -15.90160 -15.51672 -15.12435 -14.76960 -14.49998 -13.99644 -13.80176 -13.70571 -13.49875 -13.38310 -13.02151 -12.68635 -12.17745 -11.96191 -11.94051 -11.75216 -11.67738 -11.44859 -10.89019 -10.79342 -10.67924 -9.85581 -9.67639 -8.31712 -6.37867 1.37146 1.38715 1.49997 1.50860 1.73865 2.34857 3.03317 3.03845 3.39433 3.57572 3.66130 3.93759 4.02649 4.11724 4.31188 4.37450 4.40185 4.48466 4.54783 4.58519 4.65136 4.68075 4.85153 4.86059 4.90418 5.26889 5.30103 5.41272 5.59507 6.00578 6.22548 6.43765 6.61006 6.70039 7.01927 7.06434 7.26985 8.85270 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.005803 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.508062 B = 4824.210966 C = 5670.587048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.537 4.537 8 H 0.024 0.976 9 C -0.003 4.003 10 C -0.116 4.116 11 C 0.088 3.912 12 H 0.114 0.886 13 N -0.829 5.829 14 C 0.549 3.451 15 O -0.576 6.576 16 N -0.656 5.656 17 C 0.099 3.901 18 C -0.118 4.118 19 C 0.093 3.907 20 O -0.597 6.597 21 C 0.112 3.888 22 H 0.267 0.733 23 H 0.025 0.975 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.346 0.654 28 H 0.356 0.644 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.706 -9.486 11.213 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.575 4.575 8 H 0.043 0.957 9 C -0.041 4.041 10 C -0.156 4.156 11 C -0.027 4.027 12 H 0.132 0.868 13 N -0.361 5.361 14 C 0.339 3.661 15 O -0.456 6.456 16 N -0.391 5.391 17 C -0.023 4.023 18 C -0.137 4.137 19 C 0.015 3.985 20 O -0.406 6.406 21 C -0.010 4.010 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.159 0.841 28 H 0.172 0.828 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.090 0.910 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 17.176 -9.525 10.235 22.147 hybrid contribution -1.295 0.528 -0.069 1.400 sum 15.881 -8.997 10.165 20.892 Atomic orbital electron populations 1.70082 1.08557 1.28318 1.52283 1.26084 0.95639 1.03790 0.93793 0.85591 0.79701 0.77621 0.79330 1.19119 1.21156 1.16101 1.21411 0.92094 0.92946 1.51078 0.95749 1.19480 0.93937 0.93448 0.97211 1.21988 0.93462 0.98952 1.01203 1.21316 0.93327 0.91905 0.96121 0.86849 1.58742 1.66486 1.07720 1.03171 1.20369 0.76522 0.88097 0.81081 1.90623 1.50496 1.66871 1.37575 1.49623 1.64655 1.18362 1.06443 1.23498 1.01882 0.97774 0.79147 1.22897 1.00262 0.95618 0.94925 1.22033 0.89330 1.01056 0.86039 1.86476 1.40849 1.89858 1.23440 1.23099 1.00054 0.85297 0.92537 0.92429 0.95667 0.95087 0.92382 0.94087 0.84120 0.82818 0.86481 0.90910 0.88986 0.91040 0.90747 0.74984 0.90986 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 2 C 0.00 0.22 5.47 84.66 0.46 0.68 16 3 Si 0.96 43.04 27.47 68.60 1.88 44.92 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 7 C -0.54 -30.91 9.66 25.60 0.25 -30.66 16 8 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 9 C 0.00 -0.15 3.81 29.85 0.11 -0.03 16 10 C -0.12 -4.58 4.78 30.59 0.15 -4.44 16 11 C 0.09 2.93 3.03 44.17 0.13 3.06 16 12 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 13 N -0.83 -26.89 8.94 -171.81 -1.54 -28.42 16 14 C 0.55 18.85 7.33 87.66 0.64 19.49 16 15 O -0.58 -23.66 17.03 -3.05 -0.05 -23.71 16 16 N -0.66 -17.40 3.69 -857.77 -3.16 -20.56 16 17 C 0.10 1.98 8.00 83.27 0.67 2.65 16 18 C -0.12 -2.05 4.37 -10.38 -0.05 -2.09 16 19 C 0.09 1.02 6.96 71.98 0.50 1.52 16 20 O -0.60 -8.83 13.66 -148.98 -2.03 -10.86 16 21 C 0.11 2.11 8.19 83.17 0.68 2.79 16 22 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 23 H 0.03 1.07 6.29 -2.39 -0.02 1.05 16 24 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 25 H 0.06 2.31 7.73 -2.39 -0.02 2.29 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.35 11.71 8.58 -89.69 -0.77 10.94 16 28 H 0.36 10.69 7.55 -89.70 -0.68 10.01 16 29 H 0.12 1.63 7.87 -2.39 -0.02 1.62 16 30 H 0.07 1.71 7.73 -2.38 -0.02 1.69 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.50 7.80 -2.38 -0.02 0.48 16 34 H 0.40 2.00 9.12 -74.06 -0.68 1.32 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.11 1.48 8.10 -2.39 -0.02 1.46 16 Total: -1.00 -77.38 302.07 -2.13 -79.51 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -1.07 Total: 25.75 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 3.55 Total: -7.04 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -4.40 Total: -108.57 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -2.09 Total: -34.58 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Total: -77.38 -2.13 -79.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691559047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.462 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds