Wall clock time and date at job start Mon Mar 30 2020 03:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00107 * 2 1 4 4 O 1.42890 * 112.87489 * 294.09120 * 3 2 1 5 5 C 1.42902 * 114.00228 * 310.82788 * 4 3 2 6 6 C 1.53895 * 113.64243 * 162.67989 * 3 2 1 7 7 C 1.53887 * 87.19394 * 220.53460 * 6 3 2 8 8 C 1.53146 * 113.63887 * 65.37539 * 3 2 1 9 9 C 1.53513 * 114.92023 * 256.05596 * 8 3 2 10 10 C 1.55148 * 103.95525 * 132.09452 * 9 8 3 11 11 C 1.55044 * 102.03778 * 20.65466 * 10 9 8 12 12 H 1.09009 * 110.59566 * 82.14773 * 11 10 9 13 13 C 1.50698 * 110.59742 * 204.92457 * 11 10 9 14 14 H 1.08003 * 120.00006 * 357.88459 * 13 11 10 15 15 C 1.37872 * 120.00486 * 177.88146 * 13 11 10 16 16 N 1.31520 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00256 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46889 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47000 * 300.00251 * 17 15 13 20 20 H 1.48496 * 109.46772 * 60.00469 * 17 15 13 21 21 O 1.43067 * 115.23021 * 22.69480 * 8 3 2 22 22 H 1.09002 * 109.46388 * 294.22393 * 1 2 3 23 23 H 1.08989 * 109.47563 * 54.22735 * 1 2 3 24 24 H 1.09001 * 109.47259 * 174.23093 * 1 2 3 25 25 H 1.09001 * 109.47135 * 185.48520 * 5 4 3 26 26 H 1.09000 * 109.46760 * 305.48853 * 5 4 3 27 27 H 1.09002 * 109.47094 * 65.47817 * 5 4 3 28 28 H 1.08993 * 113.59964 * 335.11852 * 6 3 2 29 29 H 1.09007 * 113.59324 * 105.87613 * 6 3 2 30 30 H 1.09004 * 113.64784 * 270.46873 * 7 6 3 31 31 H 1.09001 * 113.64515 * 139.46586 * 7 6 3 32 32 H 1.08993 * 110.54521 * 250.56937 * 9 8 3 33 33 H 1.09004 * 110.54266 * 13.22126 * 9 8 3 34 34 H 1.08999 * 110.81270 * 262.57393 * 10 9 8 35 35 H 1.09000 * 111.00618 * 138.83106 * 10 9 8 36 36 H 0.97004 * 119.99268 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.7452 2.0314 -1.2019 5 6 2.0176 1.2967 -2.3969 6 6 3.4907 1.3218 0.4197 7 6 3.1733 2.6015 1.2133 8 6 1.7260 2.1042 1.2754 9 6 0.6600 3.1991 1.1288 10 6 -0.2739 2.9778 2.3477 11 6 0.6358 2.1709 3.3097 12 1 1.2951 2.8386 3.8643 13 6 -0.1953 1.3431 4.2557 14 1 -1.2732 1.3994 4.2183 15 6 0.4202 0.5138 5.1692 16 7 1.7328 0.4456 5.2152 17 14 -0.6101 -0.5128 6.3414 18 1 0.2846 -1.3124 7.2162 19 1 -1.4482 0.3831 7.1780 20 1 -1.4855 -1.4246 5.5621 21 8 1.4003 1.3195 2.4265 22 1 -0.3632 0.4217 0.9372 23 1 -0.3634 0.6007 -0.8337 24 1 -0.3634 -1.0225 -0.1033 25 1 1.8846 1.9470 -3.2615 26 1 3.0440 0.9304 -2.3721 27 1 1.3322 0.4522 -2.4683 28 1 3.7755 0.4780 1.0481 29 1 4.1780 1.4813 -0.4112 30 1 3.2966 3.5168 0.6344 31 1 3.6626 2.6451 2.1864 32 1 1.1177 4.1872 1.1752 33 1 0.1115 3.0764 0.1948 34 1 -1.1507 2.3962 2.0633 35 1 -0.5652 3.9284 2.7945 36 1 2.2678 0.9784 4.6062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710986996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:28 Heat of formation + Delta-G solvation = -113.261041 kcal Electronic energy + Delta-G solvation = -19302.190278 eV Core-core repulsion = 16366.620328 eV Total energy + Delta-G solvation = -2935.569950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41907 -37.53531 -35.64269 -34.65946 -32.40286 -31.13752 -27.51420 -26.93790 -26.24518 -24.02450 -23.58202 -21.63034 -20.50648 -18.96023 -17.26824 -17.14783 -15.95143 -15.73941 -15.20227 -14.35914 -14.21872 -13.72461 -13.64562 -13.47701 -13.35602 -12.89925 -12.61740 -12.05850 -11.91730 -11.38624 -11.28930 -11.08176 -10.84210 -10.74000 -10.65652 -10.39741 -10.08108 -10.06529 -9.87956 -9.46880 -9.26613 -8.73853 -8.54277 -8.15361 -6.38791 -4.17343 3.42566 3.45084 3.53755 3.64478 4.02614 4.51823 4.90872 4.93610 5.03996 5.13954 5.40765 5.45106 5.48304 5.56840 5.67333 5.74673 5.77368 5.84410 5.90450 5.99698 6.05848 6.27054 6.28553 6.34394 6.46508 6.51443 6.63160 6.67666 6.72954 6.87724 7.23528 7.80429 8.00807 8.29317 8.44923 8.84410 9.64435 11.02283 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.033369 B = 0.008048 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.909846 B = 3478.420217 C = 3564.100367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.374 6.374 3 C 0.244 3.756 4 O -0.376 6.376 5 C 0.035 3.965 6 C -0.130 4.130 7 C -0.151 4.151 8 C 0.084 3.916 9 C -0.138 4.138 10 C -0.140 4.140 11 C 0.189 3.811 12 H 0.022 0.978 13 C -0.604 4.604 14 H 0.057 0.943 15 C 0.032 3.968 16 N -0.887 5.887 17 Si 1.069 2.931 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.287 1.287 21 O -0.331 6.331 22 H 0.064 0.936 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 3.116 -11.595 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.294 6.294 3 C 0.167 3.833 4 O -0.296 6.296 5 C -0.061 4.061 6 C -0.167 4.167 7 C -0.189 4.189 8 C 0.042 3.958 9 C -0.175 4.175 10 C -0.178 4.178 11 C 0.135 3.865 12 H 0.039 0.961 13 C -0.641 4.641 14 H 0.075 0.925 15 C -0.176 4.176 16 N -0.521 5.521 17 Si 0.897 3.103 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.213 1.213 21 O -0.250 6.250 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.562 1.820 -10.315 10.490 hybrid contribution -0.252 1.269 -1.561 2.028 sum 0.310 3.089 -11.876 12.275 Atomic orbital electron populations 1.22677 0.80709 1.01676 1.01187 1.87948 1.20519 1.27019 1.93928 1.24172 0.93711 0.80582 0.84877 1.87962 1.87760 1.40246 1.13671 1.22580 0.99984 0.96931 0.86612 1.23346 0.93753 0.99634 1.00012 1.23261 0.97760 0.96843 1.01058 1.22901 0.93830 0.90901 0.88167 1.22745 0.97246 0.98084 0.99450 1.23161 0.99003 1.00144 0.95510 1.20982 0.88233 0.89625 0.87668 0.96084 1.21855 0.93614 1.30620 1.17998 0.92467 1.25885 0.97384 0.96485 0.97874 1.70682 1.05015 1.38346 1.38034 0.83561 0.74831 0.76150 0.75795 1.20654 1.21350 1.21316 1.89208 1.73361 1.35937 1.26526 0.91788 0.94870 0.90451 0.89955 0.93930 0.93704 0.88092 0.91068 0.89602 0.89999 0.91622 0.91085 0.91719 0.92029 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.42 101.05 1.05 1.67 16 2 O -0.37 -7.59 9.57 -64.44 -0.62 -8.21 16 3 C 0.24 4.59 0.83 -26.19 -0.02 4.57 16 4 O -0.38 -6.26 9.00 -58.61 -0.53 -6.79 16 5 C 0.04 0.46 10.65 101.05 1.08 1.53 16 6 C -0.13 -2.27 7.60 -25.81 -0.20 -2.47 16 7 C -0.15 -2.72 7.42 -26.18 -0.19 -2.91 16 8 C 0.08 1.73 0.70 -90.20 -0.06 1.67 16 9 C -0.14 -2.62 6.17 -25.33 -0.16 -2.77 16 10 C -0.14 -2.99 6.58 -24.51 -0.16 -3.15 16 11 C 0.19 4.87 2.67 -26.80 -0.07 4.80 16 12 H 0.02 0.58 8.00 -51.92 -0.42 0.17 16 13 C -0.60 -17.10 8.82 -34.44 -0.30 -17.40 16 14 H 0.06 1.59 7.77 -52.48 -0.41 1.18 16 15 C 0.03 0.94 5.43 -17.82 -0.10 0.84 16 16 N -0.89 -27.12 13.58 55.43 0.75 -26.37 16 17 Si 1.07 25.20 29.90 -169.99 -5.08 20.11 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 O -0.33 -8.43 8.75 -49.30 -0.43 -8.86 16 22 H 0.06 1.36 7.02 -51.93 -0.36 0.99 16 23 H 0.03 0.54 7.64 -51.94 -0.40 0.14 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.52 7.78 -51.93 -0.40 0.12 16 27 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 28 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 29 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 30 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 33 H 0.07 1.29 7.24 -51.93 -0.38 0.92 16 34 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.28 8.60 6.65 -40.82 -0.27 8.33 16 LS Contribution 291.57 15.07 4.39 4.39 Total: -1.00 -31.51 291.57 -6.24 -37.74 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.59 Total: 1.61 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 0.86 Total: -13.63 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.75 Total: -26.37 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -1.58 Total: -23.86 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.51 -6.24 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710986996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.519 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds