Wall clock time and date at job start Mon Mar 30 2020 03:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00107 * 2 1 4 4 O 1.42890 * 112.87489 * 294.09120 * 3 2 1 5 5 C 1.42902 * 114.00228 * 310.82788 * 4 3 2 6 6 C 1.53895 * 113.64243 * 162.67989 * 3 2 1 7 7 C 1.53887 * 87.19394 * 220.53460 * 6 3 2 8 8 C 1.53146 * 113.63887 * 65.37539 * 3 2 1 9 9 C 1.53513 * 114.92023 * 256.05596 * 8 3 2 10 10 C 1.55148 * 103.95525 * 132.09452 * 9 8 3 11 11 C 1.55044 * 102.03778 * 20.65466 * 10 9 8 12 12 H 1.09009 * 110.59566 * 82.14773 * 11 10 9 13 13 C 1.50698 * 110.59742 * 204.92457 * 11 10 9 14 14 H 1.08003 * 120.00006 * 357.88459 * 13 11 10 15 15 C 1.37872 * 120.00486 * 177.88146 * 13 11 10 16 16 N 1.31520 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00256 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46889 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47000 * 300.00251 * 17 15 13 20 20 H 1.48496 * 109.46772 * 60.00469 * 17 15 13 21 21 O 1.43067 * 115.23021 * 22.69480 * 8 3 2 22 22 H 1.09002 * 109.46388 * 294.22393 * 1 2 3 23 23 H 1.08989 * 109.47563 * 54.22735 * 1 2 3 24 24 H 1.09001 * 109.47259 * 174.23093 * 1 2 3 25 25 H 1.09001 * 109.47135 * 185.48520 * 5 4 3 26 26 H 1.09000 * 109.46760 * 305.48853 * 5 4 3 27 27 H 1.09002 * 109.47094 * 65.47817 * 5 4 3 28 28 H 1.08993 * 113.59964 * 335.11852 * 6 3 2 29 29 H 1.09007 * 113.59324 * 105.87613 * 6 3 2 30 30 H 1.09004 * 113.64784 * 270.46873 * 7 6 3 31 31 H 1.09001 * 113.64515 * 139.46586 * 7 6 3 32 32 H 1.08993 * 110.54521 * 250.56937 * 9 8 3 33 33 H 1.09004 * 110.54266 * 13.22126 * 9 8 3 34 34 H 1.08999 * 110.81270 * 262.57393 * 10 9 8 35 35 H 1.09000 * 111.00618 * 138.83106 * 10 9 8 36 36 H 0.97004 * 119.99268 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.7452 2.0314 -1.2019 5 6 2.0176 1.2967 -2.3969 6 6 3.4907 1.3218 0.4197 7 6 3.1733 2.6015 1.2133 8 6 1.7260 2.1042 1.2754 9 6 0.6600 3.1991 1.1288 10 6 -0.2739 2.9778 2.3477 11 6 0.6358 2.1709 3.3097 12 1 1.2951 2.8386 3.8643 13 6 -0.1953 1.3431 4.2557 14 1 -1.2732 1.3994 4.2183 15 6 0.4202 0.5138 5.1692 16 7 1.7328 0.4456 5.2152 17 14 -0.6101 -0.5128 6.3414 18 1 0.2846 -1.3124 7.2162 19 1 -1.4482 0.3831 7.1780 20 1 -1.4855 -1.4246 5.5621 21 8 1.4003 1.3195 2.4265 22 1 -0.3632 0.4217 0.9372 23 1 -0.3634 0.6007 -0.8337 24 1 -0.3634 -1.0225 -0.1033 25 1 1.8846 1.9470 -3.2615 26 1 3.0440 0.9304 -2.3721 27 1 1.3322 0.4522 -2.4683 28 1 3.7755 0.4780 1.0481 29 1 4.1780 1.4813 -0.4112 30 1 3.2966 3.5168 0.6344 31 1 3.6626 2.6451 2.1864 32 1 1.1177 4.1872 1.1752 33 1 0.1115 3.0764 0.1948 34 1 -1.1507 2.3962 2.0633 35 1 -0.5652 3.9284 2.7945 36 1 2.2678 0.9784 4.6062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710986996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:28 Heat of formation + Delta-G solvation = -133.798781 kcal Electronic energy + Delta-G solvation = -19303.080861 eV Core-core repulsion = 16366.620328 eV Total energy + Delta-G solvation = -2936.460533 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.94018 -39.14792 -37.06745 -36.23270 -34.47329 -32.88189 -29.32776 -28.17820 -27.65091 -25.90087 -25.04355 -23.35451 -22.24021 -20.45868 -19.21576 -18.66826 -17.54120 -17.29009 -16.76799 -15.78739 -15.64080 -15.54341 -15.40965 -15.02358 -14.73640 -14.56183 -14.23961 -13.74005 -13.27979 -13.16151 -12.70159 -12.61652 -12.52200 -12.42183 -12.26475 -12.04675 -11.92548 -11.47017 -11.45763 -11.00898 -10.82665 -10.66258 -10.58241 -10.05525 -8.66482 -6.45369 1.52210 1.60573 1.79943 2.13562 2.56193 2.59981 3.13368 3.45817 3.51773 3.60260 3.70920 3.91250 4.16160 4.22886 4.34159 4.34673 4.45674 4.52545 4.53556 4.56371 4.71597 4.76304 4.79121 4.83511 4.89159 4.94482 5.02449 5.09307 5.20151 5.36972 5.51963 5.91387 6.09001 6.35515 6.50078 6.65518 7.46040 8.73970 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.033369 B = 0.008048 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.909846 B = 3478.420217 C = 3564.100367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.394 6.394 3 C 0.250 3.750 4 O -0.378 6.378 5 C 0.027 3.973 6 C -0.126 4.126 7 C -0.144 4.144 8 C 0.058 3.942 9 C -0.125 4.125 10 C -0.133 4.133 11 C 0.184 3.816 12 H -0.006 1.006 13 C -0.620 4.620 14 H 0.057 0.943 15 C -0.019 4.019 16 N -0.916 5.916 17 Si 1.116 2.884 18 H -0.284 1.284 19 H -0.264 1.264 20 H -0.273 1.273 21 O -0.361 6.361 22 H 0.029 0.971 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 3.664 -13.371 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.315 6.315 3 C 0.172 3.828 4 O -0.299 6.299 5 C -0.068 4.068 6 C -0.164 4.164 7 C -0.182 4.182 8 C 0.017 3.983 9 C -0.162 4.162 10 C -0.170 4.170 11 C 0.129 3.871 12 H 0.012 0.988 13 C -0.657 4.657 14 H 0.075 0.925 15 C -0.221 4.221 16 N -0.551 5.551 17 Si 0.937 3.063 18 H -0.209 1.209 19 H -0.189 1.189 20 H -0.199 1.199 21 O -0.280 6.280 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.016 2.390 -12.120 12.353 hybrid contribution -0.073 1.137 -1.128 1.603 sum -0.057 3.527 -13.248 13.709 Atomic orbital electron populations 1.22676 0.80028 1.02990 1.00144 1.87925 1.21371 1.28163 1.94043 1.24024 0.93840 0.79778 0.85129 1.87937 1.87912 1.40235 1.13830 1.22875 1.00471 0.97549 0.85924 1.23304 0.94026 0.98466 1.00579 1.23274 0.95659 0.98357 1.00868 1.23297 0.95664 0.91632 0.87719 1.22693 0.96320 0.98615 0.98620 1.23047 0.98401 0.99965 0.95627 1.20820 0.88391 0.89399 0.88481 0.98827 1.22256 0.94020 1.30531 1.18906 0.92490 1.27391 0.97634 0.97509 0.99585 1.70812 1.06001 1.39631 1.38689 0.82978 0.73792 0.75269 0.74293 1.20900 1.18858 1.19851 1.89095 1.73708 1.36983 1.28249 0.95221 0.92715 0.88724 0.86712 0.93078 0.94010 0.90419 0.87731 0.86567 0.91637 0.89530 0.89903 0.92271 0.90457 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.42 113.37 1.18 2.53 16 2 O -0.39 -15.69 9.57 -121.05 -1.16 -16.85 16 3 C 0.25 9.00 0.83 30.95 0.03 9.03 16 4 O -0.38 -11.40 9.00 -126.63 -1.14 -12.54 16 5 C 0.03 0.61 10.65 113.37 1.21 1.82 16 6 C -0.13 -4.25 7.60 31.19 0.24 -4.02 16 7 C -0.14 -5.01 7.42 30.95 0.23 -4.78 16 8 C 0.06 2.37 0.70 -10.52 -0.01 2.36 16 9 C -0.12 -4.55 6.17 31.50 0.19 -4.35 16 10 C -0.13 -5.60 6.58 32.03 0.21 -5.39 16 11 C 0.18 9.72 2.67 30.55 0.08 9.80 16 12 H -0.01 -0.33 8.00 -2.38 -0.02 -0.35 16 13 C -0.62 -35.92 8.82 25.60 0.23 -35.69 16 14 H 0.06 3.20 7.77 -2.91 -0.02 3.18 16 15 C -0.02 -1.14 5.43 84.65 0.46 -0.68 16 16 N -0.92 -57.92 13.58 21.45 0.29 -57.63 16 17 Si 1.12 51.02 29.90 68.60 2.05 53.07 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 O -0.36 -18.87 8.75 -135.53 -1.19 -20.06 16 22 H 0.03 1.26 7.02 -2.39 -0.02 1.24 16 23 H 0.05 1.69 7.64 -2.39 -0.02 1.67 16 24 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 25 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.07 7.78 -2.39 -0.02 1.05 16 27 H 0.04 0.97 7.43 -2.39 -0.02 0.95 16 28 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.10 2.77 7.89 -2.38 -0.02 2.75 16 30 H 0.12 3.31 8.08 -2.38 -0.02 3.29 16 31 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.09 2.76 7.89 -2.39 -0.02 2.74 16 33 H 0.08 2.81 7.24 -2.38 -0.02 2.79 16 34 H 0.06 2.53 8.04 -2.39 -0.02 2.51 16 35 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.26 17.05 6.65 -92.71 -0.62 16.43 16 Total: -1.00 -69.70 291.57 4.10 -65.60 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.20 Total: 17.80 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.05 Total: -29.38 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.29 Total: -57.63 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -3.48 Total: -49.46 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -69.70 4.10 -65.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710986996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.202 kcal (2) G-P(sol) polarization free energy of solvation -69.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds