Wall clock time and date at job start Mon Mar 30 2020 03:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47089 * 2 1 4 4 C 1.50699 * 109.46983 * 240.00298 * 2 1 3 5 5 H 1.08004 * 119.99772 * 239.99954 * 4 2 1 6 6 C 1.37873 * 120.00686 * 59.99898 * 4 2 1 7 7 N 1.31521 * 119.99371 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00654 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46980 * 90.00096 * 8 6 4 10 10 H 1.48494 * 109.47377 * 210.00192 * 8 6 4 11 11 H 1.48503 * 109.47116 * 330.00210 * 8 6 4 12 12 C 1.52998 * 109.47103 * 120.00398 * 2 1 3 13 13 C 1.50694 * 109.47435 * 64.43924 * 12 2 1 14 14 O 1.20825 * 120.00113 * 359.97438 * 13 12 2 15 15 O 1.34236 * 120.00269 * 179.97438 * 13 12 2 16 16 C 1.53010 * 109.46909 * 184.43994 * 12 2 1 17 17 C 1.52992 * 109.47098 * 60.00027 * 16 12 2 18 18 C 1.53000 * 109.47583 * 59.99820 * 17 16 12 19 19 O 1.42902 * 109.47615 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47133 * 300.00235 * 18 17 16 21 21 C 1.53000 * 109.47185 * 304.43841 * 12 2 1 22 22 H 1.09002 * 109.47315 * 305.43284 * 1 2 3 23 23 H 1.08997 * 109.47243 * 65.44111 * 1 2 3 24 24 H 1.09007 * 109.47260 * 185.43508 * 1 2 3 25 25 H 0.97001 * 119.99973 * 179.97438 * 7 6 4 26 26 H 0.96697 * 117.00042 * 180.02562 * 15 13 12 27 27 H 1.08999 * 109.46780 * 299.99362 * 16 12 2 28 28 H 1.08998 * 109.46829 * 179.97438 * 16 12 2 29 29 H 1.09006 * 109.47355 * 299.99529 * 17 16 12 30 30 H 1.08996 * 109.47007 * 179.97438 * 17 16 12 31 31 H 1.08998 * 109.47117 * 59.99804 * 18 17 16 32 32 H 0.96698 * 114.00124 * 180.02562 * 19 18 17 33 33 H 1.09000 * 109.47383 * 180.02562 * 20 18 17 34 34 H 1.09003 * 109.47220 * 299.99870 * 20 18 17 35 35 H 1.08996 * 109.47073 * 59.99606 * 21 12 2 36 36 H 1.08998 * 109.47429 * 180.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0399 -0.7213 1.2492 13 6 1.6295 -2.1703 1.1954 14 8 0.9938 -2.5836 0.2547 15 8 1.9700 -3.0019 2.1926 16 6 3.5660 -0.6253 1.3062 17 6 3.9827 0.8457 1.3609 18 6 3.3836 1.4997 2.6076 19 8 3.7723 2.8738 2.6584 20 6 1.8577 1.4036 2.5506 21 6 1.4408 -0.0675 2.4960 22 1 -0.3634 0.5958 0.8373 23 1 -0.3633 0.4271 -0.9347 24 1 -0.3634 -1.0231 0.0973 25 1 0.7094 1.1619 -3.4844 26 1 1.6845 -3.9223 2.1134 27 1 3.9927 -1.0912 0.4180 28 1 3.9292 -1.1388 2.1964 29 1 3.6194 1.3597 0.4709 30 1 5.0697 0.9141 1.4020 31 1 3.7469 0.9858 3.4976 32 1 3.4278 3.3520 3.4250 33 1 1.4308 1.8699 3.4386 34 1 1.4943 1.9175 1.6606 35 1 0.3538 -0.1358 2.4553 36 1 1.8045 -0.5811 3.3860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821974192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:43 Heat of formation + Delta-G solvation = -180.893084 kcal Electronic energy + Delta-G solvation = -19254.341817 eV Core-core repulsion = 16315.839122 eV Total energy + Delta-G solvation = -2938.502695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85939 -39.63058 -37.38768 -36.65652 -34.94216 -32.43919 -31.76832 -29.78135 -27.11985 -24.77171 -23.76616 -23.34773 -21.68473 -19.56281 -18.91554 -18.29604 -18.07505 -17.03277 -16.65824 -16.25341 -15.52008 -15.41936 -14.88441 -14.68868 -14.32642 -14.01346 -13.70825 -13.18374 -13.06543 -12.96104 -12.87091 -12.55332 -12.37318 -12.36179 -12.16917 -12.12220 -11.81527 -11.69912 -11.17418 -10.99426 -10.81857 -10.61658 -10.41259 -10.21900 -8.00577 -6.05281 1.36483 1.38876 1.46282 1.55765 2.38901 2.47270 3.28791 3.43420 3.82059 3.84892 4.13364 4.29986 4.36363 4.45307 4.53518 4.64674 4.66186 4.88794 5.01017 5.07314 5.10195 5.19521 5.22719 5.28951 5.32201 5.41390 5.48265 5.65339 5.68555 5.83883 6.06281 6.17849 6.46224 6.96693 7.05878 7.33865 7.56611 9.04625 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.010581 C = 0.008702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.163744 B = 2645.631572 C = 3216.868339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 H 0.030 0.970 4 C -0.482 4.482 5 H 0.041 0.959 6 C 0.006 3.994 7 N -0.922 5.922 8 Si 0.936 3.064 9 H -0.288 1.288 10 H -0.284 1.284 11 H -0.270 1.270 12 C -0.040 4.040 13 C 0.482 3.518 14 O -0.521 6.521 15 O -0.514 6.514 16 C -0.087 4.087 17 C -0.111 4.111 18 C 0.114 3.886 19 O -0.586 6.586 20 C -0.145 4.145 21 C -0.099 4.099 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.028 0.972 25 H 0.255 0.745 26 H 0.416 0.584 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.393 0.607 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -1.416 14.592 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.047 3.953 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.059 0.941 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.764 3.236 9 H -0.215 1.215 10 H -0.209 1.209 11 H -0.195 1.195 12 C -0.041 4.041 13 C 0.324 3.676 14 O -0.409 6.409 15 O -0.328 6.328 16 C -0.124 4.124 17 C -0.148 4.148 18 C 0.056 3.944 19 O -0.394 6.394 20 C -0.183 4.183 21 C -0.137 4.137 22 H 0.048 0.952 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.276 0.724 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.242 0.758 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.050 -1.184 13.672 14.308 hybrid contribution -0.614 -0.970 -1.193 1.655 sum 3.436 -2.154 12.479 13.122 Atomic orbital electron populations 1.21860 0.99211 0.98634 0.99945 1.18580 0.92232 0.94744 0.89708 0.95267 1.21291 1.28819 1.10266 0.91655 0.94104 1.25511 0.96249 0.95955 1.01287 1.69995 1.38814 1.24414 1.23142 0.85882 0.78657 0.78386 0.80664 1.21487 1.20922 1.19465 1.20695 0.97803 0.86558 0.99052 1.23746 0.75552 0.89703 0.78595 1.90720 1.37670 1.77844 1.34636 1.84506 1.74790 1.26043 1.47456 1.21333 0.92101 0.96668 1.02343 1.21418 1.00699 0.94793 0.97901 1.21766 0.92759 0.82013 0.97867 1.86501 1.77200 1.23565 1.52180 1.22226 0.96907 0.96250 1.02895 1.21527 1.00491 0.95889 0.95758 0.95205 0.93161 0.95263 0.93592 0.72403 0.92721 0.89256 0.93426 0.90738 0.90113 0.75764 0.88761 0.93228 0.91923 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.96 8.19 71.98 0.59 -6.37 16 2 C 0.07 3.18 0.94 -11.54 -0.01 3.17 16 3 H 0.03 1.55 4.82 -2.39 -0.01 1.54 16 4 C -0.48 -26.82 6.17 25.60 0.16 -26.66 16 5 H 0.04 2.31 6.23 -2.91 -0.02 2.29 16 6 C 0.01 0.37 5.29 84.65 0.45 0.82 16 7 N -0.92 -55.27 11.29 21.45 0.24 -55.03 16 8 Si 0.94 46.58 29.54 68.60 2.03 48.60 16 9 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 10 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 12 C -0.04 -1.51 0.26 -52.93 -0.01 -1.53 16 13 C 0.48 18.59 6.07 71.23 0.43 19.02 16 14 O -0.52 -24.88 13.13 21.97 0.29 -24.59 16 15 O -0.51 -14.34 13.23 -51.48 -0.68 -15.02 16 16 C -0.09 -2.96 4.47 30.60 0.14 -2.82 16 17 C -0.11 -3.69 5.30 30.59 0.16 -3.52 16 18 C 0.11 3.05 3.47 30.59 0.11 3.15 16 19 O -0.59 -15.53 13.32 -148.98 -1.98 -17.51 16 20 C -0.15 -4.03 5.27 30.60 0.16 -3.87 16 21 C -0.10 -2.96 4.19 30.60 0.13 -2.83 16 22 H 0.03 1.28 6.68 -2.39 -0.02 1.27 16 23 H 0.05 2.86 5.94 -2.39 -0.01 2.85 16 24 H 0.03 1.48 5.82 -2.38 -0.01 1.47 16 25 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.42 7.98 9.10 -74.06 -0.67 7.30 16 27 H 0.05 2.12 6.91 -2.39 -0.02 2.11 16 28 H 0.09 2.45 8.11 -2.39 -0.02 2.43 16 29 H 0.05 1.99 6.33 -2.38 -0.02 1.97 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.39 6.25 9.08 -74.06 -0.67 5.58 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.75 6.53 -2.39 -0.02 1.74 16 35 H 0.06 1.96 6.48 -2.39 -0.02 1.94 16 36 H 0.09 2.23 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -71.50 274.35 1.96 -69.54 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -0.23 Total: 15.44 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 2.30 Total: -21.43 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.24 Total: -55.03 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -2.38 Total: -57.12 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -71.50 1.96 -69.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821974192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.355 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds