Wall clock time and date at job start Mon Mar 30 2020 03:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99772 * 2 1 4 4 C 1.53006 * 112.85211 * 65.13598 * 3 2 1 5 5 O 1.45203 * 109.46973 * 53.64017 * 4 3 2 6 6 C 1.34226 * 116.99977 * 180.02562 * 5 4 3 7 7 O 1.20823 * 119.99880 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00244 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.46996 * 60.00184 * 8 6 5 10 10 C 1.53002 * 109.47000 * 300.00283 * 8 6 5 11 11 C 1.50698 * 109.47611 * 180.02562 * 8 6 5 12 12 H 1.08006 * 119.99431 * 0.02562 * 11 8 6 13 13 C 1.37868 * 120.00473 * 179.97438 * 11 8 6 14 14 N 1.31515 * 119.99861 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00304 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47202 * 90.00028 * 15 13 11 17 17 H 1.48507 * 109.47440 * 210.00020 * 15 13 11 18 18 H 1.48503 * 109.46949 * 330.00017 * 15 13 11 19 19 C 1.53785 * 113.68994 * 196.40331 * 3 2 1 20 20 C 1.53775 * 87.08260 * 89.12669 * 19 3 2 21 21 C 1.53777 * 113.61615 * 293.93729 * 3 2 1 22 22 H 1.09003 * 109.46635 * 303.09750 * 1 2 3 23 23 H 1.08993 * 109.47149 * 63.09682 * 1 2 3 24 24 H 1.09001 * 109.46832 * 183.10328 * 1 2 3 25 25 H 1.09003 * 109.46728 * 293.64613 * 4 3 2 26 26 H 1.08994 * 109.47091 * 173.64484 * 4 3 2 27 27 H 1.08997 * 109.47289 * 59.99817 * 10 8 6 28 28 H 1.08999 * 109.47003 * 179.97438 * 10 8 6 29 29 H 1.09003 * 109.47241 * 299.99643 * 10 8 6 30 30 H 0.97007 * 120.00120 * 180.02562 * 14 13 11 31 31 H 1.09004 * 113.61483 * 203.67482 * 19 3 2 32 32 H 1.08998 * 113.61340 * 334.57299 * 19 3 2 33 33 H 1.08994 * 113.61528 * 270.88509 * 20 19 3 34 34 H 1.09003 * 113.68961 * 139.98898 * 20 19 3 35 35 H 1.08999 * 113.61333 * 25.34995 * 21 3 2 36 36 H 1.09001 * 113.61644 * 156.24915 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7103 2.0894 1.2793 5 8 2.1040 1.3012 2.4334 6 6 1.9054 1.8497 3.6424 7 8 1.4183 2.9516 3.7331 8 6 2.2899 1.0910 4.8864 9 1 3.3587 0.8781 4.8662 10 6 1.5090 -0.2234 4.9440 11 6 1.9655 1.9211 6.1015 12 1 1.5245 2.9001 5.9846 13 6 2.2307 1.4306 7.3624 14 7 2.7672 0.2383 7.5047 15 14 1.8279 2.4593 8.8687 16 1 0.4431 2.1624 9.3150 17 1 2.7805 2.1330 9.9602 18 1 1.9400 3.9005 8.5282 19 6 3.4957 1.3205 -0.3977 20 6 3.0234 1.4729 -1.8532 21 6 1.7385 2.1008 -1.2878 22 1 -0.3633 0.5612 0.8610 23 1 -0.3633 0.4650 -0.9164 24 1 -0.3633 -1.0262 0.0556 25 1 0.6427 2.3033 1.3324 26 1 2.2684 3.0256 1.2710 27 1 1.7432 -0.8241 4.0651 28 1 1.7875 -0.7723 5.8435 29 1 0.4401 -0.0104 4.9641 30 1 2.9535 -0.1070 8.3919 31 1 4.0395 2.1873 -0.0221 32 1 4.0097 0.3796 -0.2016 33 1 2.8583 0.5224 -2.3604 34 1 3.6269 2.1661 -2.4391 35 1 0.8339 1.7897 -1.8104 36 1 1.8018 3.1809 -1.1556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849851125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:44 Heat of formation + Delta-G solvation = -134.641173 kcal Electronic energy + Delta-G solvation = -18052.568145 eV Core-core repulsion = 15116.071084 eV Total energy + Delta-G solvation = -2936.497062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61836 -40.58462 -37.30891 -36.58220 -35.94116 -32.72794 -29.87877 -28.04602 -27.30229 -26.45102 -25.14421 -23.42816 -21.59355 -20.47435 -18.68809 -18.03787 -17.88809 -17.53195 -16.83083 -16.62184 -16.15877 -15.91063 -15.12489 -14.94041 -14.69257 -14.51277 -13.67891 -13.54636 -13.29318 -12.99780 -12.83640 -12.79237 -12.62288 -12.38453 -12.32242 -12.06673 -12.04424 -11.74137 -11.67466 -11.15473 -11.11886 -11.08126 -10.57069 -10.42159 -8.21046 -6.35055 1.39842 1.41813 1.43069 1.53555 1.82414 2.42440 2.71049 3.08693 3.44383 3.53970 3.63148 3.83737 4.12994 4.22152 4.35516 4.36771 4.44119 4.51442 4.65662 4.72952 4.75919 4.84667 4.87990 4.97216 5.03008 5.07625 5.16570 5.34167 5.37084 5.45292 5.66870 5.85823 6.07802 6.22463 6.71260 7.02600 7.33902 8.85569 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.044672 B = 0.005275 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.641811 B = 5306.830903 C = 5448.722746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.372 6.372 3 C 0.081 3.919 4 C 0.042 3.958 5 O -0.352 6.352 6 C 0.470 3.530 7 O -0.545 6.545 8 C 0.050 3.950 9 H 0.049 0.951 10 C -0.118 4.118 11 C -0.540 4.540 12 H 0.056 0.944 13 C 0.022 3.978 14 N -0.909 5.909 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.273 1.273 18 H -0.275 1.275 19 C -0.129 4.129 20 C -0.119 4.119 21 C -0.148 4.148 22 H 0.026 0.974 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.027 0.973 30 H 0.269 0.731 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 0.544 -17.484 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.290 6.290 3 C 0.041 3.959 4 C -0.032 4.032 5 O -0.269 6.269 6 C 0.316 3.684 7 O -0.435 6.435 8 C 0.031 3.969 9 H 0.067 0.933 10 C -0.176 4.176 11 C -0.577 4.577 12 H 0.074 0.926 13 C -0.178 4.178 14 N -0.548 5.548 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.167 4.167 20 C -0.156 4.156 21 C -0.186 4.186 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.585 0.569 -17.365 17.447 hybrid contribution -0.514 0.767 1.111 1.444 sum -2.099 1.336 -16.255 16.444 Atomic orbital electron populations 1.22906 0.80181 1.03802 1.00418 1.87919 1.20877 1.25588 1.94656 1.22922 0.97608 0.84442 0.90977 1.23780 1.00479 0.95105 0.83865 1.86651 1.76737 1.48591 1.14900 1.24905 0.73233 0.85039 0.85241 1.90460 1.42836 1.22547 1.87698 1.18672 0.97913 0.94268 0.86069 0.93304 1.21532 0.97626 0.96426 1.01976 1.21239 1.43045 1.02859 0.90599 0.92584 1.25667 0.94307 0.96317 1.01501 1.69969 1.42933 1.17641 1.24224 0.85437 0.78405 0.78733 0.78372 1.19706 1.19795 1.20022 1.23093 0.92795 1.03374 0.97395 1.22713 0.96052 1.01806 0.95068 1.23516 1.00429 1.00812 0.93797 0.95490 0.91604 0.88173 0.92098 0.90198 0.93685 0.90297 0.95343 0.92202 0.88156 0.91095 0.89482 0.88816 0.89333 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.62 113.37 1.20 1.73 16 2 O -0.37 -10.72 10.44 -141.18 -1.47 -12.20 16 3 C 0.08 2.10 0.93 -10.27 -0.01 2.09 16 4 C 0.04 1.38 4.46 71.98 0.32 1.70 16 5 O -0.35 -14.82 10.01 -47.69 -0.48 -15.30 16 6 C 0.47 23.19 7.25 71.23 0.52 23.71 16 7 O -0.55 -28.95 15.21 21.97 0.33 -28.62 16 8 C 0.05 2.66 2.74 -12.29 -0.03 2.62 16 9 H 0.05 2.72 8.14 -2.39 -0.02 2.70 16 10 C -0.12 -5.81 8.90 71.98 0.64 -5.17 16 11 C -0.54 -31.38 8.37 25.60 0.21 -31.17 16 12 H 0.06 3.41 6.76 -2.91 -0.02 3.39 16 13 C 0.02 1.23 5.30 84.65 0.45 1.68 16 14 N -0.91 -51.32 11.32 21.44 0.24 -51.08 16 15 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 C -0.13 -2.94 7.47 31.12 0.23 -2.71 16 20 C -0.12 -1.96 8.02 31.12 0.25 -1.71 16 21 C -0.15 -2.63 7.21 31.12 0.22 -2.41 16 22 H 0.03 0.70 6.85 -2.39 -0.02 0.69 16 23 H 0.07 1.15 6.82 -2.39 -0.02 1.13 16 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 2.00 7.19 -2.39 -0.02 1.99 16 26 H 0.08 2.50 8.04 -2.39 -0.02 2.48 16 27 H 0.04 1.98 8.11 -2.39 -0.02 1.96 16 28 H 0.08 4.16 6.07 -2.39 -0.01 4.15 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 31 H 0.10 2.13 8.03 -2.38 -0.02 2.11 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.37 6.80 -2.39 -0.02 1.35 16 36 H 0.10 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -66.13 299.04 5.72 -60.42 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.06 Total: 10.05 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 4.01 Total: -9.63 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.24 Total: -51.08 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -1.62 Total: -56.12 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.13 5.72 -60.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849851125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.225 kcal (2) G-P(sol) polarization free energy of solvation -66.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds