Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99902 * 2 1 4 4 H 1.08999 * 110.01507 * 29.94156 * 3 2 1 5 5 C 1.53869 * 110.02988 * 268.54334 * 3 2 1 6 6 C 1.54266 * 106.60031 * 240.66652 * 5 3 2 7 7 C 1.54894 * 104.31305 * 336.32486 * 6 5 3 8 8 H 1.08993 * 110.76071 * 279.69749 * 7 6 5 9 9 C 1.50702 * 110.75529 * 156.31998 * 7 6 5 10 10 O 1.20827 * 119.99896 * 241.45767 * 9 7 6 11 11 O 1.34223 * 119.99882 * 61.45713 * 9 7 6 12 12 C 1.45195 * 117.00159 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.47452 * 330.00217 * 12 11 9 14 14 C 1.53007 * 109.47157 * 89.99987 * 12 11 9 15 15 C 1.50701 * 109.47358 * 209.99905 * 12 11 9 16 16 H 1.07998 * 120.00032 * 0.02562 * 15 12 11 17 17 C 1.37882 * 120.00220 * 179.97438 * 15 12 11 18 18 N 1.31520 * 119.99451 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00013 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46729 * 90.00895 * 19 17 15 21 21 H 1.48501 * 109.46931 * 210.00215 * 19 17 15 22 22 H 1.48491 * 109.47330 * 330.00536 * 19 17 15 23 23 C 1.54266 * 110.07190 * 151.35519 * 3 2 1 24 24 H 1.09000 * 109.46934 * 59.99761 * 1 2 3 25 25 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47260 * 299.99845 * 1 2 3 27 27 H 1.09001 * 110.02983 * 121.38404 * 5 3 2 28 28 H 1.08996 * 110.07773 * 359.97438 * 5 3 2 29 29 H 1.09002 * 110.48629 * 95.07240 * 6 5 3 30 30 H 1.08998 * 110.48744 * 217.58143 * 6 5 3 31 31 H 1.08996 * 109.46690 * 60.00260 * 14 12 11 32 32 H 1.08996 * 109.46923 * 180.02562 * 14 12 11 33 33 H 1.08992 * 109.47170 * 300.00296 * 14 12 11 34 34 H 0.97001 * 119.99080 * 179.97438 * 18 17 15 35 35 H 1.09005 * 110.48526 * 261.59748 * 23 3 2 36 36 H 1.09006 * 110.48581 * 24.23941 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3512 2.0073 0.5112 5 6 2.2581 1.7720 -1.4452 6 6 3.7771 2.0058 -1.5783 7 6 4.2535 2.2639 -0.1273 8 1 4.0493 3.2927 0.1692 9 6 5.7194 1.9456 0.0182 10 8 6.0767 1.0805 0.7823 11 8 6.6278 2.6230 -0.7011 12 6 8.0215 2.2635 -0.5095 13 1 8.1676 1.9053 0.5095 14 6 8.4041 1.1599 -1.4978 15 6 8.8893 3.4727 -0.7462 16 1 8.4384 4.4170 -1.0135 17 6 10.2588 3.3737 -0.6206 18 7 10.8077 2.2238 -0.2946 19 14 11.3343 4.8726 -0.9133 20 1 11.5194 5.6061 0.3646 21 1 12.6569 4.4393 -1.4313 22 1 10.6818 5.7639 -1.9057 23 6 3.3872 1.2720 0.6946 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7194 2.7003 -1.6354 28 1 1.9358 1.0030 -2.1471 29 1 4.2647 1.1214 -1.9884 30 1 3.9758 2.8750 -2.2054 31 1 8.2580 1.5181 -2.5168 32 1 9.4501 0.8898 -1.3536 33 1 7.7765 0.2854 -1.3266 34 1 11.7712 2.1542 -0.2066 35 1 3.3013 1.6070 1.7283 36 1 3.8119 0.2690 0.6516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850843409.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = -151.812409 kcal Electronic energy + Delta-G solvation = -17737.327289 eV Core-core repulsion = 14800.085626 eV Total energy + Delta-G solvation = -2937.241662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.91397 -38.61138 -36.13842 -35.30370 -33.22082 -29.81901 -28.86997 -28.54079 -26.27230 -25.29428 -22.91896 -20.87861 -20.36951 -19.18626 -17.42987 -16.63353 -16.42562 -15.99056 -15.43251 -14.97925 -14.69259 -14.33796 -14.26600 -13.39085 -13.01939 -12.32351 -12.25599 -12.01446 -11.87044 -11.61041 -11.44600 -11.23142 -11.05553 -10.99152 -10.83050 -10.75175 -10.51482 -10.33694 -10.26313 -9.69223 -9.53948 -9.45581 -8.87781 -8.47393 -6.16692 -4.23567 3.04128 3.25499 3.30569 3.34354 3.48119 3.88837 4.34231 4.46080 4.60089 4.88711 5.11231 5.15351 5.16144 5.27830 5.35967 5.43072 5.45182 5.51570 5.61249 5.85095 5.88635 6.03220 6.06777 6.22883 6.36291 6.67626 6.91782 6.94827 7.13174 7.21656 7.62303 7.75726 7.97119 8.16930 8.67694 8.92082 9.41884 10.90792 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.057824 B = 0.004603 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.114227 B = 6080.976970 C = 6226.364152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.083 3.917 4 H 0.066 0.934 5 C -0.146 4.146 6 C -0.107 4.107 7 C -0.089 4.089 8 H 0.110 0.890 9 C 0.460 3.540 10 O -0.520 6.520 11 O -0.355 6.355 12 C 0.214 3.786 13 H 0.046 0.954 14 C -0.154 4.154 15 C -0.521 4.521 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.912 3.088 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.104 4.104 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.016 0.984 34 H 0.266 0.734 35 H 0.077 0.923 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.741 -0.379 -1.319 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.026 3.974 4 H 0.084 0.916 5 C -0.184 4.184 6 C -0.144 4.144 7 C -0.109 4.109 8 H 0.128 0.872 9 C 0.302 3.698 10 O -0.410 6.410 11 O -0.271 6.271 12 C 0.161 3.839 13 H 0.064 0.936 14 C -0.212 4.212 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.739 3.261 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.142 4.142 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.282 -0.880 -1.084 17.338 hybrid contribution 0.509 0.860 -0.070 1.002 sum -16.773 -0.020 -1.154 16.813 Atomic orbital electron populations 1.22764 0.81540 1.02562 0.99775 1.87987 1.19242 1.27853 1.94947 1.22846 0.94850 0.84290 0.95436 0.91621 1.22704 0.96888 1.01607 0.97211 1.22229 0.94489 1.03060 0.94668 1.21942 0.89140 1.01653 0.98128 0.87235 1.23090 0.89270 0.79511 0.77909 1.90597 1.82030 1.31637 1.36771 1.86478 1.21010 1.59020 1.60558 1.20628 0.71043 0.95203 0.96988 0.93634 1.22148 1.03929 0.96412 0.98686 1.21034 0.90709 0.95519 1.48595 0.91334 1.24898 0.97560 0.96822 0.94754 1.69910 1.11596 1.24007 1.47200 0.86271 0.79299 0.81949 0.78599 1.20420 1.20958 1.19596 1.22369 0.92214 1.01230 0.98364 0.94171 0.89832 0.94168 0.91128 0.90466 0.90775 0.90044 0.94455 0.88299 0.96537 0.92422 0.90417 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.73 10.26 -35.23 -0.36 -5.09 16 3 C 0.08 0.96 3.38 -25.62 -0.09 0.87 16 4 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 5 C -0.15 -1.57 6.60 -25.62 -0.17 -1.74 16 6 C -0.11 -1.42 6.24 -25.07 -0.16 -1.58 16 7 C -0.09 -1.36 3.42 -89.59 -0.31 -1.67 16 8 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 9 C 0.46 9.77 7.23 36.01 0.26 10.03 16 10 O -0.52 -12.59 15.03 -18.75 -0.28 -12.87 16 11 O -0.35 -8.55 9.85 -39.24 -0.39 -8.94 16 12 C 0.21 5.86 2.56 -27.88 -0.07 5.78 16 13 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 14 C -0.15 -3.99 9.33 37.16 0.35 -3.65 16 15 C -0.52 -14.80 8.90 -34.44 -0.31 -15.11 16 16 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 19 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.10 -1.46 5.61 -24.88 -0.14 -1.60 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.29 8.10 -51.93 -0.42 -0.13 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 29 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.54 7.48 -51.93 -0.39 1.15 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -31.54 300.61 -6.18 -37.72 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.66 Total: -0.92 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 0.37 Total: -5.67 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.63 Total: -24.95 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -1.03 Total: -26.90 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.54 -6.18 -37.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843409.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.094 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds