Wall clock time and date at job start Mon Mar 30 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 O 1.20818 * 120.00023 * 239.99958 * 12 2 1 14 14 O 1.34233 * 119.99764 * 60.00668 * 12 2 1 15 15 C 1.45194 * 116.99854 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.46969 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47146 * 180.02562 * 16 15 14 18 18 H 1.08999 * 109.82377 * 305.70428 * 17 16 15 19 19 C 1.54385 * 109.83167 * 184.81613 * 17 16 15 20 20 C 1.55458 * 102.18522 * 219.18194 * 19 17 16 21 21 C 1.54943 * 100.98979 * 34.03767 * 20 19 17 22 22 O 1.43238 * 109.83206 * 66.58649 * 17 16 15 23 23 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 24 24 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47023 * 299.99618 * 15 14 12 28 28 H 1.08998 * 109.47174 * 59.99840 * 15 14 12 29 29 H 1.08997 * 109.47250 * 299.99863 * 16 15 14 30 30 H 1.08999 * 109.47472 * 60.00326 * 16 15 14 31 31 H 1.09004 * 110.84510 * 337.31599 * 19 17 16 32 32 H 1.08994 * 110.85187 * 100.93984 * 19 17 16 33 33 H 1.09000 * 111.05980 * 276.12053 * 20 19 17 34 34 H 1.08997 * 111.18014 * 152.00728 * 20 19 17 35 35 H 1.08994 * 110.31194 * 204.69446 * 21 20 19 36 36 H 1.09004 * 110.31040 * 82.52045 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 6 2.0323 -0.7105 -1.2304 13 8 2.7269 -1.6928 -1.1194 14 8 1.7081 -0.2520 -2.4496 15 6 2.2277 -0.9859 -3.5895 16 6 1.7557 -0.3195 -4.8833 17 6 2.3027 -1.0933 -6.0845 18 1 3.3861 -1.1827 -6.0044 19 6 1.9330 -0.3604 -7.3921 20 6 1.5863 -1.5404 -8.3429 21 6 0.9557 -2.5464 -7.3474 22 8 1.7100 -2.3963 -6.1341 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7164 1.1670 3.4843 27 1 3.3172 -0.9848 -3.5564 28 1 1.8643 -2.0130 -3.5567 29 1 0.6662 -0.3209 -4.9162 30 1 2.1189 0.7077 -4.9164 31 1 1.0672 0.2850 -7.2435 32 1 2.7818 0.2086 -7.7713 33 1 2.4859 -1.9520 -8.8004 34 1 0.8664 -1.2357 -9.1025 35 1 1.0490 -3.5637 -7.7274 36 1 -0.0921 -2.3010 -7.1743 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118465445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:59 Heat of formation + Delta-G solvation = -172.491747 kcal Electronic energy + Delta-G solvation = -17385.312729 eV Core-core repulsion = 14447.174343 eV Total energy + Delta-G solvation = -2938.138386 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36768 -40.42363 -37.60236 -35.93257 -33.99370 -32.98340 -32.55061 -28.90438 -27.29154 -25.48845 -24.06938 -22.49678 -21.86741 -21.45461 -18.64473 -18.06688 -18.02844 -17.53249 -17.13924 -16.82329 -16.13404 -15.49460 -15.12273 -14.73393 -14.62534 -14.23345 -13.94697 -13.59410 -13.01909 -12.89244 -12.76600 -12.69906 -12.63804 -12.58361 -12.30773 -12.08709 -12.04742 -11.97368 -11.69037 -11.45020 -11.13272 -11.02876 -10.55670 -10.50182 -8.20853 -6.34387 1.41392 1.42489 1.45040 1.52169 1.89247 2.43697 2.89635 3.08982 3.57986 3.71383 3.92262 3.99449 4.05721 4.19590 4.25106 4.36425 4.44923 4.64701 4.67924 4.80957 4.81162 4.88673 4.89522 4.93972 4.99076 5.05459 5.10186 5.30294 5.38382 5.50235 5.68448 5.87220 6.09322 6.10072 6.71546 7.03669 7.34304 8.85612 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.059943 B = 0.004074 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.998357 B = 6870.538634 C = 7044.568221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 H 0.053 0.947 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.965 3.035 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.274 1.274 12 C 0.470 3.530 13 O -0.546 6.546 14 O -0.363 6.363 15 C 0.061 3.939 16 C -0.118 4.118 17 C 0.078 3.922 18 H 0.084 0.916 19 C -0.144 4.144 20 C -0.148 4.148 21 C 0.037 3.963 22 O -0.410 6.410 23 H 0.049 0.951 24 H 0.026 0.974 25 H 0.079 0.921 26 H 0.269 0.731 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 -0.327 -21.002 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.031 3.969 3 H 0.071 0.929 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.200 1.200 12 C 0.316 3.684 13 O -0.436 6.436 14 O -0.280 6.280 15 C -0.012 4.012 16 C -0.155 4.155 17 C 0.020 3.980 18 H 0.102 0.898 19 C -0.181 4.181 20 C -0.186 4.186 21 C -0.039 4.039 22 O -0.330 6.330 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.435 -0.652 -20.720 20.734 hybrid contribution 0.403 -0.529 0.866 1.092 sum -0.031 -1.182 -19.854 19.889 Atomic orbital electron populations 1.21557 0.94309 0.99814 1.02067 1.18693 0.95973 0.96193 0.86078 0.92906 1.21235 1.32913 1.13296 0.90622 0.92727 1.25648 0.94856 0.95632 1.01547 1.69951 1.36563 1.23278 1.24883 0.85510 0.78741 0.78630 0.78170 1.19891 1.19646 1.19963 1.24918 0.75995 0.82541 0.84981 1.90469 1.37664 1.27937 1.87515 1.86535 1.70170 1.56011 1.15331 1.23104 0.98531 0.95601 0.84000 1.21978 1.02553 1.00499 0.90480 1.22814 0.97713 0.82723 0.94724 0.89782 1.23200 1.03881 0.98425 0.92592 1.23288 1.02340 0.94842 0.98109 1.23618 0.95464 1.01067 0.83767 1.88473 1.68598 1.33455 1.42490 0.93188 0.95441 0.90228 0.92160 0.92066 0.92902 0.90464 0.88103 0.89413 0.87952 0.89770 0.87839 0.89025 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.90 71.98 0.64 -5.20 16 2 C 0.05 2.65 2.74 -12.29 -0.03 2.62 16 3 H 0.05 2.90 8.14 -2.39 -0.02 2.88 16 4 C -0.54 -31.87 8.37 25.60 0.21 -31.66 16 5 H 0.05 3.37 6.76 -2.91 -0.02 3.35 16 6 C 0.02 1.30 5.31 84.66 0.45 1.75 16 7 N -0.91 -51.20 11.33 21.45 0.24 -50.96 16 8 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 C 0.47 23.61 7.25 71.24 0.52 24.13 16 13 O -0.55 -30.08 15.21 21.99 0.33 -29.74 16 14 O -0.36 -15.25 10.12 -51.45 -0.52 -15.77 16 15 C 0.06 2.12 5.38 71.98 0.39 2.51 16 16 C -0.12 -2.87 5.16 30.59 0.16 -2.71 16 17 C 0.08 1.59 3.51 31.06 0.11 1.70 16 18 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 19 C -0.14 -1.86 6.56 31.91 0.21 -1.65 16 20 C -0.15 -1.68 7.16 32.10 0.23 -1.46 16 21 C 0.04 0.62 7.78 72.65 0.57 1.18 16 22 O -0.41 -10.31 10.64 -148.98 -1.59 -11.90 16 23 H 0.05 2.12 8.11 -2.39 -0.02 2.10 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 4.15 6.08 -2.39 -0.01 4.13 16 26 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 27 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 28 H 0.05 2.00 7.88 -2.39 -0.02 1.98 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 1.04 7.85 -2.39 -0.02 1.03 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -67.53 300.81 4.99 -62.55 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.05 Total: 7.91 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 3.45 Total: -8.78 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.24 Total: -50.96 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -1.77 Total: -57.41 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.53 4.99 -62.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118465445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.947 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds