Wall clock time and date at job start Mon Mar 30 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46965 * 2 1 4 4 C 1.50696 * 109.47191 * 119.99687 * 2 1 3 5 5 H 1.08002 * 119.99558 * 120.00082 * 4 2 1 6 6 C 1.37874 * 120.00580 * 299.99955 * 4 2 1 7 7 N 1.31509 * 120.00637 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47442 * 89.99823 * 8 6 4 10 10 H 1.48499 * 109.47347 * 209.99919 * 8 6 4 11 11 H 1.48506 * 109.46985 * 329.99739 * 8 6 4 12 12 N 1.46897 * 109.47033 * 240.00009 * 2 1 3 13 13 C 1.46893 * 111.00095 * 183.94927 * 12 2 1 14 14 C 1.46902 * 111.00006 * 59.99487 * 12 2 1 15 15 C 1.52998 * 109.47193 * 196.75526 * 14 12 2 16 16 H 1.08998 * 109.47243 * 53.43366 * 15 14 12 17 17 O 1.42900 * 109.47266 * 293.43362 * 15 14 12 18 18 C 1.53006 * 109.46947 * 173.43809 * 15 14 12 19 19 N 1.46905 * 109.46835 * 185.00161 * 18 15 14 20 20 C 1.46894 * 110.99918 * 179.97438 * 19 18 15 21 21 C 1.52990 * 117.50034 * 223.62068 * 20 19 18 22 22 C 1.52997 * 117.49838 * 154.99665 * 20 19 18 23 23 H 1.09000 * 109.46774 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.47243 * 299.99747 * 1 2 3 25 25 H 1.08991 * 109.47584 * 59.99913 * 1 2 3 26 26 H 0.96995 * 120.00572 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.47057 * 52.39056 * 13 12 2 28 28 H 1.09001 * 109.47491 * 172.39099 * 13 12 2 29 29 H 1.09005 * 109.47572 * 292.39333 * 13 12 2 30 30 H 1.08998 * 109.47309 * 316.76235 * 14 12 2 31 31 H 1.09010 * 109.46799 * 76.75660 * 14 12 2 32 32 H 0.96697 * 114.00254 * 300.00677 * 17 15 14 33 33 H 1.09001 * 109.46664 * 304.99859 * 18 15 14 34 34 H 1.08996 * 109.47178 * 64.99974 * 18 15 14 35 35 H 1.00898 * 111.00126 * 56.04415 * 19 18 15 36 36 H 1.09006 * 115.54802 * 9.33021 * 20 19 18 37 37 H 1.09004 * 117.49976 * 0.02562 * 21 20 19 38 38 H 1.09008 * 117.50048 * 145.02347 * 21 20 19 39 39 H 1.09003 * 117.49856 * 214.97887 * 22 20 19 40 40 H 1.08995 * 117.50253 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6249 1.2791 2.6542 9 1 -0.8027 0.8727 2.6999 10 1 0.9760 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 3.4850 -0.7944 -1.1871 14 6 1.5485 -0.0264 -2.4211 15 6 1.7086 -0.9731 -3.6123 16 1 1.2181 -1.9211 -3.3915 17 8 3.0981 -1.2013 -3.8560 18 6 1.0698 -0.3448 -4.8525 19 7 1.1170 -1.3021 -5.9658 20 6 0.5104 -0.7322 -7.1762 21 6 -0.4251 -1.6304 -7.9877 22 6 0.9666 -1.2912 -8.5253 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.9028 -0.5283 4.4375 27 1 3.8108 -1.2324 -0.2436 28 1 3.8123 -1.4260 -2.0130 29 1 3.9194 0.1994 -1.2955 30 1 0.4978 0.2402 -2.3074 31 1 2.1358 0.8758 -2.5925 32 1 3.5986 -0.3994 -4.0595 33 1 0.0323 -0.0893 -4.6368 34 1 1.6170 0.5574 -5.1256 35 1 0.6719 -2.1719 -5.7139 36 1 0.2710 0.3301 -7.1265 37 1 -0.5909 -2.6443 -7.6233 38 1 -1.2804 -1.1593 -8.4722 39 1 1.0268 -0.5969 -9.3634 40 1 1.7170 -2.0816 -8.5149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:18 Heat of formation + Delta-G solvation = -5.690856 kcal Electronic energy + Delta-G solvation = -17945.148175 eV Core-core repulsion = 15182.368664 eV Total energy + Delta-G solvation = -2762.779511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -38.74559 -37.67665 -35.96602 -33.25949 -32.56956 -30.24548 -29.21297 -25.90736 -24.34475 -23.21304 -22.59405 -21.67123 -20.96402 -19.45217 -16.90688 -16.44894 -16.27328 -15.68697 -15.42848 -14.91040 -14.27911 -14.14092 -13.76647 -13.12280 -12.99167 -12.80728 -12.56739 -12.31873 -11.97803 -11.76138 -11.67331 -11.21049 -11.03015 -10.91676 -10.73765 -10.62005 -10.58662 -10.44129 -10.11090 -9.58485 -9.30149 -8.92533 -8.56397 -8.37274 -7.31014 -6.06453 -4.04796 3.25028 3.34385 3.37208 3.57086 3.80082 4.39037 4.63466 4.65692 4.68108 4.75249 4.93068 5.18663 5.22827 5.26981 5.37745 5.41069 5.51531 5.57950 5.69555 5.71968 5.91964 5.92695 6.20205 6.30770 6.36942 6.42262 6.53752 6.68937 6.83074 6.85464 7.08346 7.15435 7.28426 7.60358 7.92030 7.98388 8.13848 8.67097 9.01094 9.55399 11.06377 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045885 B = 0.004524 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.080027 B = 6187.843173 C = 6551.249588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.179 3.821 3 H -0.005 1.005 4 C -0.504 4.504 5 H 0.084 0.916 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.887 3.113 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.520 5.520 13 C 0.024 3.976 14 C 0.016 3.984 15 C 0.118 3.882 16 H 0.103 0.897 17 O -0.543 6.543 18 C 0.029 3.971 19 N -0.649 5.649 20 C 0.022 3.978 21 C -0.209 4.209 22 C -0.172 4.172 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.003 0.997 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.365 0.635 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.345 0.655 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 2.467 -19.909 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.071 3.929 3 H 0.012 0.988 4 C -0.543 4.543 5 H 0.102 0.898 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.196 1.196 12 N -0.244 5.244 13 C -0.124 4.124 14 C -0.113 4.113 15 C 0.058 3.942 16 H 0.121 0.879 17 O -0.347 6.347 18 C -0.101 4.101 19 N -0.279 5.279 20 C -0.089 4.089 21 C -0.248 4.248 22 C -0.211 4.211 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.021 0.979 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.212 0.788 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.561 1.537 -19.721 20.099 hybrid contribution -1.256 2.300 0.363 2.645 sum -4.817 3.837 -19.359 20.314 Atomic orbital electron populations 1.22238 0.98784 1.01303 0.98045 1.19708 0.91274 0.92619 0.89251 0.98776 1.21003 1.31802 1.13570 0.87876 0.89791 1.24930 0.95879 0.96596 0.95831 1.69876 1.45784 1.40278 0.97859 0.86878 0.80773 0.83854 0.76755 1.20566 1.22489 1.19587 1.61877 1.10755 1.51196 1.00526 1.22591 0.87189 0.98862 1.03731 1.22852 1.01320 0.94812 0.92366 1.21940 0.82409 0.99601 0.90234 0.87894 1.86620 1.19512 1.36390 1.92148 1.22760 0.99776 0.95919 0.91630 1.60144 1.58262 1.06371 1.03111 1.22438 1.00240 0.97037 0.89149 1.23426 0.94248 1.01153 1.05971 1.23104 0.97184 1.03932 0.96836 0.92016 0.94067 0.95362 0.92632 0.90332 0.90431 0.97884 0.90299 0.95636 0.78850 0.94161 0.90784 0.83580 0.87592 0.88668 0.88940 0.88939 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.50 37.16 0.32 -2.88 16 2 C 0.18 4.27 1.65 -68.87 -0.11 4.16 16 3 H -0.01 -0.13 7.20 -51.93 -0.37 -0.50 16 4 C -0.50 -14.21 8.41 -34.44 -0.29 -14.50 16 5 H 0.08 2.58 6.67 -52.49 -0.35 2.23 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 8 Si 0.89 22.03 24.37 -169.99 -4.14 17.88 16 9 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 12 N -0.52 -10.74 4.57 -236.28 -1.08 -11.82 16 13 C 0.02 0.48 8.87 60.06 0.53 1.02 16 14 C 0.02 0.26 4.64 -3.82 -0.02 0.24 16 15 C 0.12 1.61 3.34 -26.73 -0.09 1.52 16 16 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 17 O -0.54 -7.73 10.33 -35.23 -0.36 -8.09 16 18 C 0.03 0.32 5.17 -3.82 -0.02 0.30 16 19 N -0.65 -7.00 6.73 -106.73 -0.72 -7.72 16 20 C 0.02 0.21 6.31 -67.72 -0.43 -0.22 16 21 C -0.21 -1.69 10.23 -26.74 -0.27 -1.97 16 22 C -0.17 -1.47 10.46 -26.73 -0.28 -1.75 16 23 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.04 0.94 3.27 -51.92 -0.17 0.77 16 25 H 0.03 0.52 6.08 -51.93 -0.32 0.20 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 28 H 0.08 1.42 5.59 -51.93 -0.29 1.13 16 29 H 0.00 0.05 8.03 -51.93 -0.42 -0.37 16 30 H 0.08 1.25 5.60 -51.93 -0.29 0.95 16 31 H 0.03 0.40 7.97 -51.92 -0.41 -0.01 16 32 H 0.37 4.20 9.05 45.56 0.41 4.61 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.34 3.62 8.52 -39.29 -0.33 3.29 16 36 H 0.11 0.93 7.90 -51.93 -0.41 0.52 16 37 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 308.76 15.07 4.65 4.65 Total: -1.00 -30.79 308.76 -7.46 -38.26 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.83 Total: 5.81 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.76 Total: -12.19 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -1.03 Total: -46.32 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.36 Total: -8.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.79 -7.46 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.566 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds