Wall clock time and date at job start Mon Mar 30 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46965 * 2 1 4 4 C 1.50696 * 109.47191 * 119.99687 * 2 1 3 5 5 H 1.08002 * 119.99558 * 120.00082 * 4 2 1 6 6 C 1.37874 * 120.00580 * 299.99955 * 4 2 1 7 7 N 1.31509 * 120.00637 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47442 * 89.99823 * 8 6 4 10 10 H 1.48499 * 109.47347 * 209.99919 * 8 6 4 11 11 H 1.48506 * 109.46985 * 329.99739 * 8 6 4 12 12 N 1.46897 * 109.47033 * 240.00009 * 2 1 3 13 13 C 1.46893 * 111.00095 * 183.94927 * 12 2 1 14 14 C 1.46902 * 111.00006 * 59.99487 * 12 2 1 15 15 C 1.52998 * 109.47193 * 196.75526 * 14 12 2 16 16 H 1.08998 * 109.47243 * 53.43366 * 15 14 12 17 17 O 1.42900 * 109.47266 * 293.43362 * 15 14 12 18 18 C 1.53006 * 109.46947 * 173.43809 * 15 14 12 19 19 N 1.46905 * 109.46835 * 185.00161 * 18 15 14 20 20 C 1.46894 * 110.99918 * 179.97438 * 19 18 15 21 21 C 1.52990 * 117.50034 * 223.62068 * 20 19 18 22 22 C 1.52997 * 117.49838 * 154.99665 * 20 19 18 23 23 H 1.09000 * 109.46774 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.47243 * 299.99747 * 1 2 3 25 25 H 1.08991 * 109.47584 * 59.99913 * 1 2 3 26 26 H 0.96995 * 120.00572 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.47057 * 52.39056 * 13 12 2 28 28 H 1.09001 * 109.47491 * 172.39099 * 13 12 2 29 29 H 1.09005 * 109.47572 * 292.39333 * 13 12 2 30 30 H 1.08998 * 109.47309 * 316.76235 * 14 12 2 31 31 H 1.09010 * 109.46799 * 76.75660 * 14 12 2 32 32 H 0.96697 * 114.00254 * 300.00677 * 17 15 14 33 33 H 1.09001 * 109.46664 * 304.99859 * 18 15 14 34 34 H 1.08996 * 109.47178 * 64.99974 * 18 15 14 35 35 H 1.00898 * 111.00126 * 56.04415 * 19 18 15 36 36 H 1.09006 * 115.54802 * 9.33021 * 20 19 18 37 37 H 1.09004 * 117.49976 * 0.02562 * 21 20 19 38 38 H 1.09008 * 117.50048 * 145.02347 * 21 20 19 39 39 H 1.09003 * 117.49856 * 214.97887 * 22 20 19 40 40 H 1.08995 * 117.50253 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6249 1.2791 2.6542 9 1 -0.8027 0.8727 2.6999 10 1 0.9760 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 3.4850 -0.7944 -1.1871 14 6 1.5485 -0.0264 -2.4211 15 6 1.7086 -0.9731 -3.6123 16 1 1.2181 -1.9211 -3.3915 17 8 3.0981 -1.2013 -3.8560 18 6 1.0698 -0.3448 -4.8525 19 7 1.1170 -1.3021 -5.9658 20 6 0.5104 -0.7322 -7.1762 21 6 -0.4251 -1.6304 -7.9877 22 6 0.9666 -1.2912 -8.5253 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.9028 -0.5283 4.4375 27 1 3.8108 -1.2324 -0.2436 28 1 3.8123 -1.4260 -2.0130 29 1 3.9194 0.1994 -1.2955 30 1 0.4978 0.2402 -2.3074 31 1 2.1358 0.8758 -2.5925 32 1 3.5986 -0.3994 -4.0595 33 1 0.0323 -0.0893 -4.6368 34 1 1.6170 0.5574 -5.1256 35 1 0.6719 -2.1719 -5.7139 36 1 0.2710 0.3301 -7.1265 37 1 -0.5909 -2.6443 -7.6233 38 1 -1.2804 -1.1593 -8.4722 39 1 1.0268 -0.5969 -9.3634 40 1 1.7170 -2.0816 -8.5149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:16 Heat of formation + Delta-G solvation = -31.384528 kcal Electronic energy + Delta-G solvation = -17946.262336 eV Core-core repulsion = 15182.368664 eV Total energy + Delta-G solvation = -2763.893672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -39.90881 -38.65022 -37.33430 -34.60882 -34.12022 -32.03856 -30.49339 -27.55161 -26.02569 -24.67143 -23.21811 -22.59444 -21.93062 -21.19472 -18.87496 -17.57596 -17.35934 -16.96776 -16.61265 -16.08158 -15.94285 -15.26700 -15.17910 -14.68024 -14.39988 -14.22376 -13.89451 -13.67756 -13.41963 -12.90783 -12.82041 -12.57021 -12.43885 -12.35609 -12.23403 -12.04869 -11.87024 -11.66834 -11.44541 -11.27596 -11.05247 -10.73290 -10.44682 -9.12986 -8.94008 -8.28209 -6.31600 1.29066 1.34077 1.44452 2.31232 2.81984 3.00364 3.05615 3.37887 3.65164 4.01678 4.04963 4.14012 4.15757 4.23267 4.29911 4.44458 4.56337 4.60458 4.62866 4.65949 4.70265 4.81441 4.84716 4.88427 5.05774 5.06939 5.08494 5.22567 5.29965 5.41314 5.44606 5.65780 6.03129 6.11131 6.36253 6.41232 6.73382 6.76985 6.97778 7.33181 8.88410 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045885 B = 0.004524 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.080027 B = 6187.843173 C = 6551.249588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.181 3.819 3 H -0.013 1.013 4 C -0.509 4.509 5 H 0.040 0.960 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.251 1.251 12 N -0.535 5.535 13 C 0.034 3.966 14 C 0.017 3.983 15 C 0.129 3.871 16 H 0.088 0.912 17 O -0.558 6.558 18 C 0.041 3.959 19 N -0.660 5.660 20 C 0.012 3.988 21 C -0.201 4.201 22 C -0.175 4.175 23 H 0.054 0.946 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.266 0.734 27 H 0.038 0.962 28 H 0.096 0.904 29 H 0.011 0.989 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.378 0.622 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.344 0.656 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 4.270 -22.229 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.073 3.927 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.058 0.942 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.227 1.227 11 H -0.175 1.175 12 N -0.259 5.259 13 C -0.114 4.114 14 C -0.111 4.111 15 C 0.069 3.931 16 H 0.106 0.894 17 O -0.364 6.364 18 C -0.088 4.088 19 N -0.290 5.290 20 C -0.099 4.099 21 C -0.240 4.240 22 C -0.213 4.213 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.029 0.971 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.226 0.774 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.184 3.343 -22.086 22.931 hybrid contribution -0.649 1.641 1.013 2.034 sum -5.832 4.984 -21.073 22.426 Atomic orbital electron populations 1.22131 0.96719 1.01466 0.99618 1.19551 0.92811 0.91527 0.88812 0.99526 1.21275 1.30839 1.12352 0.90231 0.94226 1.25818 0.97504 1.00089 0.95327 1.70038 1.47881 1.42583 0.98557 0.85811 0.79317 0.79843 0.77121 1.18916 1.22693 1.17544 1.61812 1.10831 1.51914 1.01306 1.22465 0.87342 0.99318 1.02243 1.22966 1.01744 0.95534 0.90900 1.21752 0.82362 0.98455 0.90567 0.89438 1.86577 1.20055 1.37647 1.92137 1.22573 1.00064 0.95836 0.90367 1.60126 1.58938 1.06462 1.03520 1.22517 1.01089 0.97603 0.88674 1.23465 0.94397 1.00944 1.05191 1.23146 0.97305 1.03899 0.96940 0.92672 0.94779 0.91359 0.92549 0.94326 0.88586 0.97059 0.89337 0.94417 0.77357 0.93191 0.89839 0.83695 0.86778 0.88798 0.87668 0.87668 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.50 71.98 0.61 -5.23 16 2 C 0.18 8.47 1.65 44.17 0.07 8.54 16 3 H -0.01 -0.61 7.20 -2.39 -0.02 -0.63 16 4 C -0.51 -29.42 8.41 25.60 0.22 -29.21 16 5 H 0.04 2.58 6.67 -2.91 -0.02 2.56 16 6 C 0.01 0.56 5.45 84.65 0.46 1.02 16 7 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 8 Si 0.95 44.99 24.37 68.60 1.67 46.66 16 9 H -0.26 -11.73 6.87 99.48 0.68 -11.04 16 10 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 11 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 12 N -0.53 -21.61 4.57 -901.46 -4.12 -25.73 16 13 C 0.03 1.37 8.87 127.69 1.13 2.51 16 14 C 0.02 0.51 4.64 86.30 0.40 0.91 16 15 C 0.13 3.21 3.34 30.60 0.10 3.31 16 16 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 17 O -0.56 -14.81 10.33 -148.98 -1.54 -16.35 16 18 C 0.04 0.79 5.17 86.30 0.45 1.23 16 19 N -0.66 -12.75 6.73 -491.58 -3.31 -16.06 16 20 C 0.01 0.19 6.31 44.91 0.28 0.47 16 21 C -0.20 -2.78 10.23 30.59 0.31 -2.46 16 22 C -0.17 -2.62 10.46 30.59 0.32 -2.30 16 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.03 1.44 3.27 -2.38 -0.01 1.43 16 25 H 0.07 2.24 6.08 -2.39 -0.01 2.23 16 26 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.04 1.83 5.99 -2.38 -0.01 1.82 16 28 H 0.10 3.46 5.59 -2.39 -0.01 3.45 16 29 H 0.01 0.41 8.03 -2.38 -0.02 0.40 16 30 H 0.09 2.45 5.60 -2.39 -0.01 2.43 16 31 H 0.04 1.05 7.97 -2.38 -0.02 1.03 16 32 H 0.38 7.76 9.05 -74.06 -0.67 7.09 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.34 6.62 8.52 -89.70 -0.76 5.86 16 36 H 0.11 1.65 7.90 -2.38 -0.02 1.63 16 37 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 38 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -67.67 308.76 -3.11 -70.79 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.48 Total: 21.69 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.36 Total: -21.20 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -7.13 Total: -101.58 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.54 Total: -16.35 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.67 Total: 46.66 kcal Total: -67.67 -3.11 -70.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.403 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds