Wall clock time and date at job start Mon Mar 30 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47495 * 2 1 4 4 C 1.50704 * 109.47470 * 239.99762 * 2 1 3 5 5 H 1.07998 * 119.99736 * 240.00117 * 4 2 1 6 6 C 1.37876 * 119.99590 * 60.00194 * 4 2 1 7 7 N 1.31509 * 120.00167 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47202 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46935 * 120.00054 * 8 6 4 11 11 H 1.48492 * 109.47214 * 239.99837 * 8 6 4 12 12 N 1.46905 * 109.47096 * 120.00059 * 2 1 3 13 13 C 1.46894 * 111.00097 * 58.94944 * 12 2 1 14 14 C 1.46902 * 110.99757 * 295.00070 * 12 2 1 15 15 C 1.53003 * 109.47051 * 284.28045 * 14 12 2 16 16 H 1.09000 * 109.47171 * 54.98569 * 15 14 12 17 17 O 1.42900 * 109.46906 * 294.98424 * 15 14 12 18 18 C 1.53004 * 109.46973 * 174.98408 * 15 14 12 19 19 N 1.46900 * 109.47019 * 184.99672 * 18 15 14 20 20 C 1.46902 * 111.00280 * 180.02562 * 19 18 15 21 21 C 1.52998 * 117.50107 * 223.62354 * 20 19 18 22 22 C 1.52998 * 60.00059 * 252.51124 * 21 20 19 23 23 H 1.09000 * 109.46526 * 59.99998 * 1 2 3 24 24 H 1.09002 * 109.47065 * 300.00234 * 1 2 3 25 25 H 1.08995 * 109.47301 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99670 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46947 * 54.32193 * 13 12 2 28 28 H 1.08998 * 109.47000 * 174.32033 * 13 12 2 29 29 H 1.08993 * 109.47513 * 294.32501 * 13 12 2 30 30 H 1.09001 * 109.47488 * 44.27541 * 14 12 2 31 31 H 1.09002 * 109.47419 * 164.27998 * 14 12 2 32 32 H 0.96696 * 114.00136 * 299.99423 * 17 15 14 33 33 H 1.08993 * 109.47355 * 304.99652 * 18 15 14 34 34 H 1.09002 * 109.46803 * 65.00314 * 18 15 14 35 35 H 1.00904 * 110.99788 * 56.04527 * 19 18 15 36 36 H 1.09002 * 115.54333 * 9.33238 * 20 19 18 37 37 H 1.09003 * 117.49684 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49748 * 145.01455 * 21 20 19 39 39 H 1.08999 * 117.49472 * 252.51377 * 22 21 20 40 40 H 1.08994 * 117.51937 * 107.48078 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6486 0.0391 2.4181 15 6 2.5528 1.2637 2.5729 16 1 2.5010 1.8703 1.6688 17 8 3.9003 0.8372 2.7839 18 6 2.0869 2.0934 3.7711 19 7 2.8780 3.3288 3.8484 20 6 2.4579 4.1523 4.9901 21 6 2.3046 5.6567 4.7575 22 6 3.4838 5.1253 5.5747 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.7091 1.1613 -3.4844 27 1 1.7900 -2.5860 0.3189 28 1 1.9853 -2.5958 2.0881 29 1 0.4449 -2.0730 1.3656 30 1 0.6098 0.3614 2.3464 31 1 1.7680 -0.6124 3.2837 32 1 4.0212 0.2917 3.5731 33 1 1.0329 2.3438 3.6518 34 1 2.2223 1.5174 4.6865 35 1 2.8207 3.8495 2.9860 36 1 1.7638 3.6764 5.6828 37 1 2.5150 6.0354 3.7572 38 1 1.5093 6.1709 5.2971 39 1 3.4643 5.2899 6.6520 40 1 4.4705 5.1541 5.1125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:25 Heat of formation + Delta-G solvation = -14.903437 kcal Electronic energy + Delta-G solvation = -18063.800019 eV Core-core repulsion = 15300.621021 eV Total energy + Delta-G solvation = -2763.178998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -38.51941 -37.51468 -35.89136 -33.01563 -32.62647 -29.42169 -28.45426 -25.51987 -25.09019 -23.10005 -22.46487 -21.57419 -21.03228 -19.01142 -16.40480 -16.36741 -15.97654 -15.30894 -15.08010 -14.80098 -14.17549 -14.06691 -13.59777 -13.13632 -12.91176 -12.69172 -12.15188 -11.77654 -11.64649 -11.58753 -11.27364 -11.00153 -10.97003 -10.79813 -10.65137 -10.57989 -10.51623 -10.32409 -10.02848 -9.69275 -9.37027 -8.82856 -8.36140 -8.20620 -7.06367 -5.99100 -4.01654 3.32226 3.40096 3.45138 3.71196 3.96627 4.44421 4.80501 4.83152 4.85579 4.95590 5.11332 5.33014 5.36121 5.42809 5.53797 5.59281 5.69661 5.75914 5.80885 5.85849 6.05679 6.10626 6.19379 6.40632 6.53817 6.66375 6.81341 6.88333 7.02365 7.12478 7.32307 7.49353 7.71761 7.86329 8.15360 8.25380 8.41155 8.63360 9.04488 9.63207 11.08461 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029642 B = 0.005055 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.390309 B = 5537.652782 C = 5901.359715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.209 3.791 3 H 0.039 0.961 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.525 5.525 13 C 0.036 3.964 14 C 0.021 3.979 15 C 0.119 3.881 16 H 0.100 0.900 17 O -0.534 6.534 18 C 0.030 3.970 19 N -0.649 5.649 20 C 0.023 3.977 21 C -0.210 4.210 22 C -0.173 4.173 23 H 0.088 0.912 24 H 0.007 0.993 25 H 0.029 0.971 26 H 0.259 0.741 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.012 0.988 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.361 0.639 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.346 0.654 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 4.236 14.176 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.103 3.897 3 H 0.057 0.943 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.210 1.210 12 N -0.248 5.248 13 C -0.113 4.113 14 C -0.109 4.109 15 C 0.058 3.942 16 H 0.118 0.882 17 O -0.337 6.337 18 C -0.100 4.100 19 N -0.279 5.279 20 C -0.088 4.088 21 C -0.249 4.249 22 C -0.211 4.211 23 H 0.107 0.893 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.206 0.794 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.166 0.834 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.064 4.348 13.767 14.476 hybrid contribution -1.763 -0.247 -0.610 1.881 sum -0.698 4.102 13.157 13.799 Atomic orbital electron populations 1.22420 1.01185 0.99338 1.00359 1.19324 0.89359 0.94745 0.86280 0.94297 1.21164 1.30230 1.12398 0.89666 0.91857 1.24922 0.95266 0.95149 0.99012 1.69888 1.37332 1.23165 1.23220 0.86472 0.78490 0.79723 0.82922 1.19716 1.21266 1.21045 1.62263 1.59251 1.01563 1.01721 1.22221 0.96376 0.91113 1.01545 1.22726 0.97354 0.96002 0.94799 1.21866 0.82605 0.93483 0.96198 0.88205 1.86673 1.26228 1.71985 1.48780 1.22773 0.95185 0.91833 1.00250 1.60132 1.55881 1.06238 1.05655 1.22434 1.00599 0.88751 0.96987 1.23428 1.01548 0.97749 1.02147 1.23100 0.95399 1.03543 0.99060 0.89315 0.97450 0.95153 0.93136 0.90533 0.94116 0.96928 0.94329 0.92359 0.79443 0.94410 0.90904 0.83413 0.87666 0.88625 0.88996 0.89016 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.32 37.16 0.31 -3.86 16 2 C 0.21 5.24 2.26 -68.86 -0.16 5.09 16 3 H 0.04 1.08 6.66 -51.93 -0.35 0.73 16 4 C -0.50 -13.69 7.86 -34.44 -0.27 -13.96 16 5 H 0.06 1.77 6.78 -52.49 -0.36 1.41 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.52 -11.26 4.62 -236.28 -1.09 -12.35 16 13 C 0.04 0.71 8.70 60.06 0.52 1.23 16 14 C 0.02 0.37 4.52 -3.82 -0.02 0.35 16 15 C 0.12 1.96 3.24 -26.73 -0.09 1.88 16 16 H 0.10 1.95 6.71 -51.93 -0.35 1.60 16 17 O -0.53 -9.31 13.23 -35.23 -0.47 -9.78 16 18 C 0.03 0.39 5.18 -3.82 -0.02 0.37 16 19 N -0.65 -8.48 6.73 -106.72 -0.72 -9.20 16 20 C 0.02 0.26 6.31 -67.71 -0.43 -0.17 16 21 C -0.21 -2.05 10.23 -26.73 -0.27 -2.32 16 22 C -0.17 -1.72 10.46 -26.73 -0.28 -2.00 16 23 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 24 H 0.01 0.15 6.25 -51.93 -0.32 -0.18 16 25 H 0.03 0.71 6.51 -51.93 -0.34 0.37 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.08 1.63 6.37 -51.93 -0.33 1.30 16 28 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.01 0.24 6.61 -51.93 -0.34 -0.11 16 30 H 0.04 0.69 5.88 -51.93 -0.31 0.38 16 31 H 0.06 0.88 7.91 -51.93 -0.41 0.47 16 32 H 0.36 4.90 9.05 45.56 0.41 5.31 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.35 4.63 8.52 -39.29 -0.33 4.30 16 36 H 0.11 1.07 7.90 -51.93 -0.41 0.66 16 37 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -29.65 315.55 -8.55 -38.20 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.84 Total: 8.70 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.79 Total: -11.92 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -1.18 Total: -46.50 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.47 Total: -9.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.65 -8.55 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.294 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds