Wall clock time and date at job start Mon Mar 30 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47495 * 2 1 4 4 C 1.50704 * 109.47470 * 239.99762 * 2 1 3 5 5 H 1.07998 * 119.99736 * 240.00117 * 4 2 1 6 6 C 1.37876 * 119.99590 * 60.00194 * 4 2 1 7 7 N 1.31509 * 120.00167 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47202 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46935 * 120.00054 * 8 6 4 11 11 H 1.48492 * 109.47214 * 239.99837 * 8 6 4 12 12 N 1.46905 * 109.47096 * 120.00059 * 2 1 3 13 13 C 1.46894 * 111.00097 * 58.94944 * 12 2 1 14 14 C 1.46902 * 110.99757 * 295.00070 * 12 2 1 15 15 C 1.53003 * 109.47051 * 284.28045 * 14 12 2 16 16 H 1.09000 * 109.47171 * 54.98569 * 15 14 12 17 17 O 1.42900 * 109.46906 * 294.98424 * 15 14 12 18 18 C 1.53004 * 109.46973 * 174.98408 * 15 14 12 19 19 N 1.46900 * 109.47019 * 184.99672 * 18 15 14 20 20 C 1.46902 * 111.00280 * 180.02562 * 19 18 15 21 21 C 1.52998 * 117.50107 * 223.62354 * 20 19 18 22 22 C 1.52998 * 60.00059 * 252.51124 * 21 20 19 23 23 H 1.09000 * 109.46526 * 59.99998 * 1 2 3 24 24 H 1.09002 * 109.47065 * 300.00234 * 1 2 3 25 25 H 1.08995 * 109.47301 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99670 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46947 * 54.32193 * 13 12 2 28 28 H 1.08998 * 109.47000 * 174.32033 * 13 12 2 29 29 H 1.08993 * 109.47513 * 294.32501 * 13 12 2 30 30 H 1.09001 * 109.47488 * 44.27541 * 14 12 2 31 31 H 1.09002 * 109.47419 * 164.27998 * 14 12 2 32 32 H 0.96696 * 114.00136 * 299.99423 * 17 15 14 33 33 H 1.08993 * 109.47355 * 304.99652 * 18 15 14 34 34 H 1.09002 * 109.46803 * 65.00314 * 18 15 14 35 35 H 1.00904 * 110.99788 * 56.04527 * 19 18 15 36 36 H 1.09002 * 115.54333 * 9.33238 * 20 19 18 37 37 H 1.09003 * 117.49684 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49748 * 145.01455 * 21 20 19 39 39 H 1.08999 * 117.49472 * 252.51377 * 22 21 20 40 40 H 1.08994 * 117.51937 * 107.48078 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6486 0.0391 2.4181 15 6 2.5528 1.2637 2.5729 16 1 2.5010 1.8703 1.6688 17 8 3.9003 0.8372 2.7839 18 6 2.0869 2.0934 3.7711 19 7 2.8780 3.3288 3.8484 20 6 2.4579 4.1523 4.9901 21 6 2.3046 5.6567 4.7575 22 6 3.4838 5.1253 5.5747 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.7091 1.1613 -3.4844 27 1 1.7900 -2.5860 0.3189 28 1 1.9853 -2.5958 2.0881 29 1 0.4449 -2.0730 1.3656 30 1 0.6098 0.3614 2.3464 31 1 1.7680 -0.6124 3.2837 32 1 4.0212 0.2917 3.5731 33 1 1.0329 2.3438 3.6518 34 1 2.2223 1.5174 4.6865 35 1 2.8207 3.8495 2.9860 36 1 1.7638 3.6764 5.6828 37 1 2.5150 6.0354 3.7572 38 1 1.5093 6.1709 5.2971 39 1 3.4643 5.2899 6.6520 40 1 4.4705 5.1541 5.1125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:23 Heat of formation + Delta-G solvation = -38.349721 kcal Electronic energy + Delta-G solvation = -18064.816726 eV Core-core repulsion = 15300.621021 eV Total energy + Delta-G solvation = -2764.195705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83771 -38.66226 -37.33762 -34.64463 -34.06230 -31.04538 -30.08947 -27.36455 -26.68768 -24.71553 -23.23616 -22.76680 -22.05200 -20.75823 -18.30709 -17.65095 -17.10983 -16.86077 -16.41885 -16.17401 -15.86447 -15.35388 -15.02359 -14.55120 -14.46478 -13.82997 -13.74928 -13.31354 -13.15592 -12.88316 -12.69785 -12.62955 -12.43615 -12.36863 -12.34322 -12.03678 -11.99163 -11.75334 -11.43791 -11.31978 -10.91179 -10.60520 -10.47733 -9.15631 -8.74179 -8.10655 -6.20202 1.40531 1.42867 1.54485 2.43434 2.82669 3.02348 3.19017 3.49558 3.74587 3.98594 4.01916 4.09511 4.16956 4.27534 4.41197 4.52338 4.58381 4.63544 4.71073 4.77604 4.79760 4.82539 4.86219 4.96044 5.06965 5.12947 5.21777 5.24317 5.29024 5.55954 5.72361 5.81278 6.09796 6.23196 6.29080 6.51614 6.78999 6.94022 7.14048 7.48928 8.95922 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029642 B = 0.005055 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.390309 B = 5537.652782 C = 5901.359715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.216 3.784 3 H 0.005 0.995 4 C -0.513 4.513 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.283 1.283 12 N -0.540 5.540 13 C 0.039 3.961 14 C 0.023 3.977 15 C 0.126 3.874 16 H 0.060 0.940 17 O -0.556 6.556 18 C 0.043 3.957 19 N -0.662 5.662 20 C 0.010 3.990 21 C -0.205 4.205 22 C -0.169 4.169 23 H 0.059 0.941 24 H 0.028 0.972 25 H 0.031 0.969 26 H 0.260 0.740 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.378 0.622 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.339 0.661 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 3.721 15.809 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.109 3.891 3 H 0.022 0.978 4 C -0.552 4.552 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.209 1.209 12 N -0.263 5.263 13 C -0.109 4.109 14 C -0.106 4.106 15 C 0.066 3.934 16 H 0.078 0.922 17 O -0.361 6.361 18 C -0.086 4.086 19 N -0.292 5.292 20 C -0.100 4.100 21 C -0.244 4.244 22 C -0.208 4.208 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.226 0.774 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.943 3.823 15.432 15.926 hybrid contribution -1.684 -0.072 -1.057 1.990 sum -0.741 3.751 14.374 14.874 Atomic orbital electron populations 1.22202 1.00494 0.99170 0.99977 1.19026 0.89694 0.93005 0.87409 0.97758 1.21449 1.30266 1.12337 0.91140 0.92725 1.25670 0.95476 0.95843 1.01789 1.70012 1.38114 1.24225 1.23830 0.85522 0.78086 0.78667 0.79451 1.19298 1.20525 1.20860 1.62142 1.59736 1.02477 1.01941 1.22211 0.96859 0.90109 1.01739 1.22808 0.97246 0.96528 0.93986 1.21660 0.82358 0.93158 0.96212 0.92216 1.86626 1.26690 1.72627 1.50169 1.22590 0.95131 0.91670 0.99253 1.60152 1.56361 1.06624 1.06054 1.22557 1.01644 0.89183 0.96621 1.23467 1.01931 0.96926 1.02051 1.23146 0.94731 1.02812 1.00080 0.92183 0.95286 0.94995 0.93071 0.92838 0.90843 0.96508 0.94492 0.89093 0.77423 0.93997 0.88792 0.84231 0.86371 0.89324 0.87393 0.87151 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.32 71.98 0.60 -7.08 16 2 C 0.22 11.02 2.26 44.17 0.10 11.12 16 3 H 0.00 0.26 6.66 -2.38 -0.02 0.25 16 4 C -0.51 -28.82 7.86 25.60 0.20 -28.62 16 5 H 0.05 3.09 6.78 -2.91 -0.02 3.07 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 N -0.54 -22.83 4.62 -901.46 -4.17 -26.99 16 13 C 0.04 1.48 8.70 127.69 1.11 2.59 16 14 C 0.02 0.78 4.52 86.30 0.39 1.17 16 15 C 0.13 4.12 3.24 30.60 0.10 4.22 16 16 H 0.06 2.44 6.71 -2.39 -0.02 2.42 16 17 O -0.56 -18.93 13.23 -148.98 -1.97 -20.90 16 18 C 0.04 1.07 5.18 86.30 0.45 1.52 16 19 N -0.66 -16.72 6.73 -491.57 -3.31 -20.03 16 20 C 0.01 0.21 6.31 44.91 0.28 0.49 16 21 C -0.21 -3.68 10.23 30.59 0.31 -3.37 16 22 C -0.17 -3.08 10.46 30.59 0.32 -2.76 16 23 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 24 H 0.03 1.23 6.25 -2.39 -0.01 1.21 16 25 H 0.03 1.48 6.51 -2.39 -0.02 1.46 16 26 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.05 2.25 6.37 -2.39 -0.02 2.23 16 28 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 29 H 0.02 0.61 6.61 -2.39 -0.02 0.59 16 30 H 0.04 1.25 5.88 -2.39 -0.01 1.24 16 31 H 0.09 2.43 7.91 -2.39 -0.02 2.42 16 32 H 0.38 9.51 9.05 -74.06 -0.67 8.84 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.34 9.19 8.52 -89.69 -0.76 8.42 16 36 H 0.12 2.07 7.90 -2.39 -0.02 2.05 16 37 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 38 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -64.10 315.55 -3.26 -67.36 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.40 Total: 27.03 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 4.31 Total: -19.71 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -7.23 Total: -100.41 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.97 Total: -20.90 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -64.10 -3.26 -67.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.010 kcal (2) G-P(sol) polarization free energy of solvation -64.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds