Wall clock time and date at job start Mon Mar 30 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47394 * 2 1 4 4 C 1.50705 * 109.47071 * 119.99707 * 2 1 3 5 5 H 1.07998 * 119.99728 * 119.99721 * 4 2 1 6 6 C 1.37878 * 119.99895 * 300.00529 * 4 2 1 7 7 N 1.31509 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99572 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47563 * 59.99880 * 8 6 4 10 10 H 1.48509 * 109.46922 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47063 * 299.99260 * 8 6 4 12 12 N 1.46900 * 109.47213 * 239.99680 * 2 1 3 13 13 C 1.48074 * 110.99927 * 188.81195 * 12 2 1 14 14 C 1.50737 * 112.93679 * 192.21810 * 13 12 2 15 15 C 1.54517 * 108.94131 * 92.65151 * 14 13 12 16 16 N 1.40085 * 111.51069 * 283.98907 * 15 14 13 17 17 C 1.46900 * 110.99882 * 188.15035 * 16 15 14 18 18 C 1.52995 * 109.47297 * 66.04576 * 17 16 15 19 19 O 1.42900 * 109.46994 * 65.00229 * 18 17 16 20 20 C 1.47690 * 114.57044 * 61.45440 * 16 15 14 21 21 C 1.47743 * 110.99671 * 61.21503 * 12 2 1 22 22 H 1.09005 * 109.47342 * 293.75475 * 1 2 3 23 23 H 1.09005 * 109.47111 * 53.75158 * 1 2 3 24 24 H 1.08997 * 109.47373 * 173.74714 * 1 2 3 25 25 H 0.97001 * 119.99981 * 180.02562 * 7 6 4 26 26 H 1.09004 * 108.78722 * 71.32631 * 13 12 2 27 27 H 1.09006 * 108.78775 * 313.11398 * 13 12 2 28 28 H 1.09006 * 109.56196 * 332.81882 * 14 13 12 29 29 H 1.08991 * 109.64957 * 212.53938 * 14 13 12 30 30 H 1.09002 * 109.07050 * 163.46778 * 15 14 13 31 31 H 1.09002 * 109.02028 * 44.47809 * 15 14 13 32 32 H 1.09006 * 109.47090 * 306.04496 * 17 16 15 33 33 H 1.09000 * 109.47119 * 186.04882 * 17 16 15 34 34 H 1.08997 * 109.47669 * 305.00064 * 18 17 16 35 35 H 1.09001 * 109.47418 * 184.99533 * 18 17 16 36 36 H 0.96704 * 114.00502 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.73775 * 38.33691 * 20 16 15 38 38 H 1.08993 * 109.73852 * 159.03724 * 20 16 15 39 39 H 1.09004 * 108.99257 * 205.56711 * 21 12 2 40 40 H 1.09003 * 108.99609 * 324.39587 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8062 -1.1209 4.0083 10 1 1.8267 -0.4198 5.2205 11 1 1.8256 -2.5201 4.0078 12 7 2.0197 -0.6926 -1.1994 13 6 3.4845 -0.8984 -1.1324 14 6 4.0773 -1.3339 -2.4481 15 6 4.5490 -0.0837 -3.2240 16 7 3.4696 0.6079 -3.7888 17 6 3.9382 1.6777 -4.6799 18 6 4.6477 1.0617 -5.8873 19 8 3.7087 0.3107 -6.6595 20 6 2.4915 1.1245 -2.8102 21 6 1.5700 -0.0060 -2.4279 22 1 -0.3634 0.4140 0.9406 23 1 -0.3633 0.6077 -0.8288 24 1 -0.3634 -1.0215 -0.1119 25 1 0.7093 1.1618 3.4844 26 1 3.6981 -1.6596 -0.3819 27 1 3.9566 0.0353 -0.8264 28 1 3.3230 -1.8621 -3.0313 29 1 4.9264 -1.9929 -2.2673 30 1 5.2288 -0.3928 -4.0180 31 1 5.0786 0.5798 -2.5403 32 1 4.6323 2.3220 -4.1403 33 1 3.0862 2.2661 -5.0204 34 1 5.4447 0.4026 -5.5431 35 1 5.0724 1.8547 -6.5028 36 1 4.0900 -0.1095 -7.4425 37 1 3.0135 1.4893 -1.9256 38 1 1.9151 1.9339 -3.2582 39 1 1.5350 -0.7269 -3.2447 40 1 0.5690 0.3937 -2.2648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070914073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:01 Heat of formation + Delta-G solvation = -25.739254 kcal Electronic energy + Delta-G solvation = -18775.197112 eV Core-core repulsion = 16011.548238 eV Total energy + Delta-G solvation = -2763.648874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.41869 -37.03610 -35.52057 -32.93213 -31.96392 -30.09781 -28.58791 -26.24352 -25.36405 -24.45708 -22.10693 -20.97475 -19.94737 -18.57572 -17.48424 -16.41370 -16.33789 -15.38946 -14.87862 -14.82254 -14.11057 -13.80739 -13.65508 -13.22594 -12.70270 -12.49662 -12.28886 -11.93651 -11.81253 -11.62682 -11.16456 -10.96612 -10.86890 -10.70696 -10.44521 -10.31191 -10.21703 -10.02825 -9.93899 -9.72311 -9.57104 -8.79115 -8.35620 -7.97573 -6.89585 -5.96621 -4.01308 3.34091 3.38272 3.41416 4.07060 4.24493 4.44249 4.96377 5.03539 5.13080 5.22012 5.32063 5.36703 5.49774 5.56165 5.64954 5.78223 5.83699 5.90893 6.03526 6.15751 6.28269 6.41336 6.43606 6.68849 6.81366 6.90669 7.01985 7.14818 7.24071 7.36363 7.59041 7.62146 7.67941 7.87305 7.88808 8.31993 8.42806 8.73147 9.06291 9.63876 11.09699 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.005719 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.194408 B = 4894.929719 C = 5169.671893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.214 3.786 3 H -0.006 1.006 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.541 5.541 13 C 0.073 3.927 14 C -0.120 4.120 15 C 0.070 3.930 16 N -0.540 5.540 17 C 0.058 3.942 18 C 0.079 3.921 19 O -0.556 6.556 20 C 0.038 3.962 21 C 0.056 3.944 22 H 0.086 0.914 23 H 0.008 0.992 24 H 0.033 0.967 25 H 0.260 0.740 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.014 0.986 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.370 0.630 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.127 0.854 -14.263 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.108 3.892 3 H 0.012 0.988 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.267 5.267 13 C -0.054 4.054 14 C -0.158 4.158 15 C -0.059 4.059 16 N -0.265 5.265 17 C -0.070 4.070 18 C 0.001 3.999 19 O -0.360 6.360 20 C -0.090 4.090 21 C -0.073 4.073 22 H 0.104 0.896 23 H 0.027 0.973 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.216 0.784 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.205 0.410 -13.877 15.206 hybrid contribution 1.595 0.890 0.986 2.075 sum 7.800 1.299 -12.890 15.122 Atomic orbital electron populations 1.21856 0.97819 0.98727 1.00688 1.19200 0.92174 0.91805 0.85983 0.98838 1.21194 1.30842 1.12196 0.89939 0.92022 1.24935 0.95274 0.95103 0.98974 1.69881 1.37009 1.23073 1.23386 0.86612 0.79011 0.79838 0.82235 1.20457 1.21402 1.20206 1.62201 1.10831 1.51166 1.02460 1.21594 0.88488 0.99754 0.95610 1.21623 1.00623 0.96441 0.97146 1.21142 0.92155 0.95677 0.96935 1.59005 1.17494 1.27006 1.23009 1.22115 0.99477 0.92873 0.92543 1.22257 0.91304 0.94099 0.92228 1.86645 1.37839 1.70080 1.41417 1.22493 0.94548 0.98507 0.93445 1.22007 0.97440 0.94233 0.93637 0.89563 0.97300 0.94798 0.93022 0.90900 0.96172 0.90197 0.91696 0.91742 0.96837 0.93953 0.90223 0.93639 0.93905 0.78438 0.93921 0.91460 0.90961 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.77 37.16 0.33 -3.00 16 2 C 0.21 5.52 1.97 -68.86 -0.14 5.39 16 3 H -0.01 -0.17 7.67 -51.93 -0.40 -0.57 16 4 C -0.50 -13.96 7.99 -34.44 -0.28 -14.24 16 5 H 0.06 1.70 6.16 -52.49 -0.32 1.38 16 6 C 0.06 1.62 5.29 -17.82 -0.09 1.52 16 7 N -0.89 -25.78 11.29 55.43 0.63 -25.15 16 8 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.54 -12.03 4.62 -229.08 -1.06 -13.09 16 13 C 0.07 1.49 4.28 -4.31 -0.02 1.47 16 14 C -0.12 -1.98 5.68 -27.07 -0.15 -2.13 16 15 C 0.07 1.06 4.84 -6.55 -0.03 1.03 16 16 N -0.54 -8.37 3.94 -239.69 -0.94 -9.31 16 17 C 0.06 0.73 5.34 -3.83 -0.02 0.71 16 18 C 0.08 0.83 7.08 37.15 0.26 1.09 16 19 O -0.56 -6.49 13.61 -35.23 -0.48 -6.97 16 20 C 0.04 0.66 5.30 -4.50 -0.02 0.64 16 21 C 0.06 1.08 5.09 -4.47 -0.02 1.05 16 22 H 0.09 2.36 5.93 -51.93 -0.31 2.05 16 23 H 0.01 0.19 6.31 -51.93 -0.33 -0.14 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.07 1.58 6.48 -51.93 -0.34 1.24 16 27 H 0.02 0.44 6.41 -51.93 -0.33 0.11 16 28 H 0.08 1.39 7.19 -51.93 -0.37 1.02 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.85 5.86 -51.93 -0.30 0.54 16 31 H 0.01 0.22 7.59 -51.93 -0.39 -0.18 16 32 H 0.04 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 34 H 0.05 0.45 6.16 -51.93 -0.32 0.13 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.37 2.50 9.12 45.56 0.42 2.92 16 37 H 0.04 0.84 6.27 -51.93 -0.33 0.52 16 38 H 0.07 1.08 7.55 -51.93 -0.39 0.68 16 39 H 0.07 1.39 7.20 -51.93 -0.37 1.01 16 40 H 0.07 1.41 5.62 -51.93 -0.29 1.12 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -30.48 295.98 -8.21 -38.69 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.61 Total: 1.30 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.19 Total: -6.46 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.38 Total: -47.56 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.48 Total: -6.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.48 -8.21 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070914073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.949 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds