Wall clock time and date at job start Mon Mar 30 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47394 * 2 1 4 4 C 1.50705 * 109.47071 * 119.99707 * 2 1 3 5 5 H 1.07998 * 119.99728 * 119.99721 * 4 2 1 6 6 C 1.37878 * 119.99895 * 300.00529 * 4 2 1 7 7 N 1.31509 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99572 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47563 * 59.99880 * 8 6 4 10 10 H 1.48509 * 109.46922 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47063 * 299.99260 * 8 6 4 12 12 N 1.46900 * 109.47213 * 239.99680 * 2 1 3 13 13 C 1.48074 * 110.99927 * 188.81195 * 12 2 1 14 14 C 1.50737 * 112.93679 * 192.21810 * 13 12 2 15 15 C 1.54517 * 108.94131 * 92.65151 * 14 13 12 16 16 N 1.40085 * 111.51069 * 283.98907 * 15 14 13 17 17 C 1.46900 * 110.99882 * 188.15035 * 16 15 14 18 18 C 1.52995 * 109.47297 * 66.04576 * 17 16 15 19 19 O 1.42900 * 109.46994 * 65.00229 * 18 17 16 20 20 C 1.47690 * 114.57044 * 61.45440 * 16 15 14 21 21 C 1.47743 * 110.99671 * 61.21503 * 12 2 1 22 22 H 1.09005 * 109.47342 * 293.75475 * 1 2 3 23 23 H 1.09005 * 109.47111 * 53.75158 * 1 2 3 24 24 H 1.08997 * 109.47373 * 173.74714 * 1 2 3 25 25 H 0.97001 * 119.99981 * 180.02562 * 7 6 4 26 26 H 1.09004 * 108.78722 * 71.32631 * 13 12 2 27 27 H 1.09006 * 108.78775 * 313.11398 * 13 12 2 28 28 H 1.09006 * 109.56196 * 332.81882 * 14 13 12 29 29 H 1.08991 * 109.64957 * 212.53938 * 14 13 12 30 30 H 1.09002 * 109.07050 * 163.46778 * 15 14 13 31 31 H 1.09002 * 109.02028 * 44.47809 * 15 14 13 32 32 H 1.09006 * 109.47090 * 306.04496 * 17 16 15 33 33 H 1.09000 * 109.47119 * 186.04882 * 17 16 15 34 34 H 1.08997 * 109.47669 * 305.00064 * 18 17 16 35 35 H 1.09001 * 109.47418 * 184.99533 * 18 17 16 36 36 H 0.96704 * 114.00502 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.73775 * 38.33691 * 20 16 15 38 38 H 1.08993 * 109.73852 * 159.03724 * 20 16 15 39 39 H 1.09004 * 108.99257 * 205.56711 * 21 12 2 40 40 H 1.09003 * 108.99609 * 324.39587 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8062 -1.1209 4.0083 10 1 1.8267 -0.4198 5.2205 11 1 1.8256 -2.5201 4.0078 12 7 2.0197 -0.6926 -1.1994 13 6 3.4845 -0.8984 -1.1324 14 6 4.0773 -1.3339 -2.4481 15 6 4.5490 -0.0837 -3.2240 16 7 3.4696 0.6079 -3.7888 17 6 3.9382 1.6777 -4.6799 18 6 4.6477 1.0617 -5.8873 19 8 3.7087 0.3107 -6.6595 20 6 2.4915 1.1245 -2.8102 21 6 1.5700 -0.0060 -2.4279 22 1 -0.3634 0.4140 0.9406 23 1 -0.3633 0.6077 -0.8288 24 1 -0.3634 -1.0215 -0.1119 25 1 0.7093 1.1618 3.4844 26 1 3.6981 -1.6596 -0.3819 27 1 3.9566 0.0353 -0.8264 28 1 3.3230 -1.8621 -3.0313 29 1 4.9264 -1.9929 -2.2673 30 1 5.2288 -0.3928 -4.0180 31 1 5.0786 0.5798 -2.5403 32 1 4.6323 2.3220 -4.1403 33 1 3.0862 2.2661 -5.0204 34 1 5.4447 0.4026 -5.5431 35 1 5.0724 1.8547 -6.5028 36 1 4.0900 -0.1095 -7.4425 37 1 3.0135 1.4893 -1.9256 38 1 1.9151 1.9339 -3.2582 39 1 1.5350 -0.7269 -3.2447 40 1 0.5690 0.3937 -2.2648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070914073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:01 Heat of formation + Delta-G solvation = -50.001667 kcal Electronic energy + Delta-G solvation = -18776.249209 eV Core-core repulsion = 16011.548238 eV Total energy + Delta-G solvation = -2764.700972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79079 -38.25417 -36.83726 -34.79731 -33.50316 -31.66635 -30.06904 -27.90414 -27.01339 -26.14398 -23.39746 -22.56285 -21.28726 -20.33745 -18.41373 -18.28951 -17.69052 -16.90538 -16.42526 -16.34282 -15.68906 -15.32282 -14.89968 -14.45295 -14.24681 -14.03811 -13.79405 -13.59993 -13.23157 -13.11494 -12.85487 -12.60724 -12.55463 -12.29523 -12.18708 -12.07698 -11.92702 -11.65157 -11.40741 -11.26016 -10.82518 -10.73587 -10.48137 -9.25463 -8.68524 -8.10634 -6.23015 1.41099 1.43257 1.50715 2.42071 2.90051 3.16194 3.34344 3.48708 3.91864 4.04502 4.06505 4.23696 4.31870 4.41557 4.46433 4.57120 4.58181 4.70315 4.76187 4.81344 4.82113 4.88593 4.95296 5.01896 5.08208 5.13058 5.24361 5.35382 5.40212 5.55580 5.75177 5.83355 6.11445 6.28546 6.40534 6.51170 6.84315 6.94000 7.06701 7.46591 8.94780 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.005719 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.194408 B = 4894.929719 C = 5169.671893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.222 3.778 3 H -0.043 1.043 4 C -0.521 4.521 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.549 5.549 13 C 0.080 3.920 14 C -0.111 4.111 15 C 0.074 3.926 16 N -0.544 5.544 17 C 0.051 3.949 18 C 0.084 3.916 19 O -0.582 6.582 20 C 0.047 3.953 21 C 0.060 3.940 22 H 0.061 0.939 23 H 0.029 0.971 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.055 0.945 27 H -0.002 1.002 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.003 0.997 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.391 0.609 37 H 0.013 0.987 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 0.230 -15.666 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.115 3.885 3 H -0.025 1.025 4 C -0.560 4.560 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.274 5.274 13 C -0.048 4.048 14 C -0.149 4.149 15 C -0.056 4.056 16 N -0.269 5.269 17 C -0.076 4.076 18 C 0.006 3.994 19 O -0.389 6.389 20 C -0.082 4.082 21 C -0.068 4.068 22 H 0.080 0.920 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.021 0.979 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.239 0.761 37 H 0.031 0.969 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.421 -0.222 -15.321 17.025 hybrid contribution 1.221 1.102 1.355 2.131 sum 8.642 0.880 -13.966 16.447 Atomic orbital electron populations 1.21682 0.97408 0.98711 1.00190 1.18977 0.92451 0.89903 0.87212 1.02532 1.21468 1.31075 1.12278 0.91139 0.92431 1.25724 0.95387 0.95787 1.01906 1.70013 1.37777 1.24202 1.24043 0.85593 0.78634 0.78774 0.78518 1.19799 1.20873 1.19604 1.62133 1.12052 1.51004 1.02234 1.21575 0.87440 0.98090 0.97677 1.21574 1.01081 0.97533 0.94741 1.21143 0.92274 0.94690 0.97463 1.59035 1.17599 1.28018 1.22231 1.22274 0.99882 0.92447 0.93006 1.22239 0.90692 0.94938 0.91553 1.86580 1.39074 1.70561 1.42699 1.22288 0.94775 0.97982 0.93113 1.21983 0.97501 0.94897 0.92419 0.92011 0.95264 0.94924 0.92971 0.92706 0.98354 0.90736 0.89166 0.88753 0.97859 0.93195 0.90469 0.92861 0.91223 0.76053 0.96901 0.90038 0.90220 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.22 8.77 71.98 0.63 -5.59 16 2 C 0.22 11.76 1.97 44.17 0.09 11.85 16 3 H -0.04 -2.54 7.67 -2.39 -0.02 -2.56 16 4 C -0.52 -29.58 7.99 25.60 0.20 -29.38 16 5 H 0.06 3.24 6.16 -2.91 -0.02 3.23 16 6 C 0.01 0.59 5.29 84.66 0.45 1.03 16 7 N -0.92 -54.15 11.29 21.45 0.24 -53.91 16 8 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.55 -24.79 4.62 -878.67 -4.06 -28.85 16 13 C 0.08 3.29 4.28 85.34 0.37 3.66 16 14 C -0.11 -3.50 5.68 30.38 0.17 -3.33 16 15 C 0.07 2.07 4.84 88.05 0.43 2.50 16 16 N -0.54 -15.96 3.94 -912.24 -3.59 -19.55 16 17 C 0.05 1.18 5.34 86.30 0.46 1.64 16 18 C 0.08 1.46 7.08 71.98 0.51 1.97 16 19 O -0.58 -11.79 13.61 -148.98 -2.03 -13.82 16 20 C 0.05 1.63 5.30 85.43 0.45 2.08 16 21 C 0.06 2.32 5.09 85.42 0.44 2.76 16 22 H 0.06 3.46 5.93 -2.38 -0.01 3.45 16 23 H 0.03 1.32 6.31 -2.38 -0.02 1.31 16 24 H 0.03 1.61 8.14 -2.39 -0.02 1.60 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.05 2.42 6.48 -2.38 -0.02 2.40 16 27 H 0.00 -0.08 6.41 -2.38 -0.02 -0.10 16 28 H 0.07 2.46 7.19 -2.38 -0.02 2.44 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 2.14 5.86 -2.39 -0.01 2.13 16 31 H 0.00 0.11 7.59 -2.39 -0.02 0.09 16 32 H 0.05 1.09 8.11 -2.38 -0.02 1.07 16 33 H 0.08 1.82 7.68 -2.39 -0.02 1.80 16 34 H 0.05 0.85 6.16 -2.39 -0.01 0.83 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.39 4.05 9.12 -74.05 -0.68 3.37 16 37 H 0.01 0.52 6.27 -2.39 -0.01 0.51 16 38 H 0.08 2.56 7.55 -2.39 -0.02 2.55 16 39 H 0.08 2.98 7.20 -2.38 -0.02 2.96 16 40 H 0.06 2.55 5.62 -2.39 -0.01 2.54 16 Total: -1.00 -66.13 295.98 -2.86 -69.00 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.36 Total: 11.38 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 4.19 Total: -10.80 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -7.41 Total: -102.31 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -2.03 Total: -13.82 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.13 -2.86 -69.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070914073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.993 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds