Wall clock time and date at job start Mon Mar 30 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47180 * 2 1 4 4 C 1.50698 * 109.46933 * 239.99726 * 2 1 3 5 5 H 1.08004 * 120.00073 * 274.29536 * 4 2 1 6 6 C 1.37881 * 119.99771 * 94.30426 * 4 2 1 7 7 N 1.31512 * 119.99722 * 181.61875 * 6 4 2 8 8 Si 1.86792 * 119.99985 * 1.61606 * 6 4 2 9 9 H 1.48500 * 109.47162 * 84.80270 * 8 6 4 10 10 H 1.48498 * 109.47235 * 204.80024 * 8 6 4 11 11 H 1.48498 * 109.47227 * 324.80234 * 8 6 4 12 12 N 1.46900 * 109.47001 * 119.99752 * 2 1 3 13 13 C 1.48064 * 111.00122 * 176.04424 * 12 2 1 14 14 C 1.50744 * 112.93467 * 84.35211 * 13 12 2 15 15 C 1.54518 * 108.94399 * 92.65146 * 14 13 12 16 16 N 1.40074 * 111.50937 * 283.98903 * 15 14 13 17 17 C 1.46904 * 111.00007 * 188.14797 * 16 15 14 18 18 C 1.52999 * 109.46840 * 66.04866 * 17 16 15 19 19 O 1.42895 * 109.47381 * 65.00109 * 18 17 16 20 20 C 1.47684 * 114.57024 * 61.45119 * 16 15 14 21 21 C 1.47743 * 111.00123 * 303.64844 * 12 2 1 22 22 H 1.09001 * 109.47161 * 186.05616 * 1 2 3 23 23 H 1.09006 * 109.47055 * 306.05363 * 1 2 3 24 24 H 1.08996 * 109.47123 * 66.05590 * 1 2 3 25 25 H 0.96998 * 119.99812 * 179.97438 * 7 6 4 26 26 H 1.09002 * 108.79356 * 323.46315 * 13 12 2 27 27 H 1.08997 * 108.70464 * 205.17753 * 13 12 2 28 28 H 1.08997 * 109.56340 * 332.81244 * 14 13 12 29 29 H 1.09008 * 109.64987 * 212.54080 * 14 13 12 30 30 H 1.09003 * 109.06925 * 163.46412 * 15 14 13 31 31 H 1.08996 * 109.01522 * 44.48047 * 15 14 13 32 32 H 1.08996 * 109.46822 * 186.04973 * 17 16 15 33 33 H 1.08998 * 109.47080 * 306.04970 * 17 16 15 34 34 H 1.09000 * 109.46683 * 185.00206 * 18 17 16 35 35 H 1.08996 * 109.47165 * 304.99916 * 18 17 16 36 36 H 0.96701 * 114.00437 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.73665 * 38.33891 * 20 16 15 38 38 H 1.09005 * 109.73826 * 159.03603 * 20 16 15 39 39 H 1.08999 * 108.99263 * 313.43442 * 21 12 2 40 40 H 1.09001 * 108.99303 * 72.26498 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1463 -1.7845 -1.2252 6 6 2.3466 0.0107 -2.3628 7 7 2.7545 -0.6122 -3.4468 8 14 2.1928 1.8722 -2.3572 9 1 3.4329 2.4697 -1.8002 10 1 1.9908 2.3564 -3.7464 11 1 1.0324 2.2706 -1.5206 12 7 2.0197 -0.6924 1.1995 13 6 3.4967 -0.7954 1.1870 14 6 4.1761 0.4387 1.7237 15 6 4.4342 0.2518 3.2357 16 7 3.2594 0.4140 3.9811 17 6 3.5475 0.4266 5.4216 18 6 4.3716 1.6688 5.7660 19 8 3.5896 2.8406 5.5267 20 6 2.1917 -0.5555 3.6634 21 6 1.4756 -0.0750 2.4265 22 1 -0.3633 -1.0219 0.1084 23 1 -0.3633 0.6049 0.8309 24 1 -0.3633 0.4171 -0.9392 25 1 2.9753 -0.1050 -4.2436 26 1 3.8285 -0.9611 0.1620 27 1 3.7926 -1.6510 1.7939 28 1 3.5343 1.3057 1.5675 29 1 5.1243 0.5889 1.2075 30 1 5.1693 0.9862 3.5649 31 1 4.8297 -0.7493 3.4073 32 1 2.6111 0.4456 5.9792 33 1 4.1105 -0.4681 5.6873 34 1 4.6607 1.6332 6.8163 35 1 5.2660 1.6955 5.1437 36 1 4.0499 3.6678 5.7244 37 1 2.6287 -1.5367 3.4780 38 1 1.4897 -0.6158 4.4951 39 1 1.5792 1.0077 2.3547 40 1 0.4180 -0.3251 2.5106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070914074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:04 Heat of formation + Delta-G solvation = -28.664980 kcal Electronic energy + Delta-G solvation = -18917.468788 eV Core-core repulsion = 16153.693044 eV Total energy + Delta-G solvation = -2763.775743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.47520 -37.11185 -35.64915 -32.70176 -31.95984 -30.68472 -28.98429 -26.20515 -25.54775 -24.48403 -22.07364 -20.82745 -20.25267 -18.46986 -17.52673 -16.87031 -16.37027 -15.52751 -15.04638 -14.57024 -14.27318 -13.86163 -13.78960 -13.24318 -12.70765 -12.52946 -12.37479 -12.18983 -11.89060 -11.67769 -11.41913 -11.23941 -10.96982 -10.83273 -10.61805 -10.52995 -10.14105 -10.06703 -9.96609 -9.69625 -9.62890 -8.97089 -8.53783 -7.97596 -7.07827 -6.04757 -4.02024 3.29919 3.38549 3.42819 4.00089 4.20776 4.44202 4.84639 4.95941 5.06934 5.19561 5.26928 5.34454 5.46849 5.50598 5.58200 5.68460 5.78909 5.85195 5.92856 6.13672 6.23707 6.36189 6.38415 6.48556 6.59367 6.68200 6.74631 6.83687 7.01319 7.14757 7.28139 7.41855 7.56304 7.63791 7.72828 8.14902 8.28866 8.74160 9.06291 9.59926 11.08237 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.006768 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.839214 B = 4136.288773 C = 4291.814634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.182 3.818 3 H -0.001 1.001 4 C -0.497 4.497 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.900 5.900 8 Si 0.871 3.129 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.266 1.266 12 N -0.535 5.535 13 C 0.059 3.941 14 C -0.145 4.145 15 C 0.074 3.926 16 N -0.547 5.547 17 C 0.060 3.940 18 C 0.078 3.922 19 O -0.557 6.557 20 C 0.066 3.934 21 C 0.058 3.942 22 H 0.052 0.948 23 H 0.021 0.979 24 H 0.046 0.954 25 H 0.263 0.737 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.016 0.984 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.371 0.629 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 3.930 17.334 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 H 0.017 0.983 4 C -0.536 4.536 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.698 3.302 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.190 1.190 12 N -0.261 5.261 13 C -0.068 4.068 14 C -0.184 4.184 15 C -0.055 4.055 16 N -0.272 5.272 17 C -0.068 4.068 18 C 0.000 4.000 19 O -0.361 6.361 20 C -0.060 4.060 21 C -0.071 4.071 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.216 0.784 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.659 3.453 16.812 17.368 hybrid contribution 1.090 1.547 0.289 1.914 sum 3.749 5.000 17.101 18.207 Atomic orbital electron populations 1.21977 0.98160 1.00256 0.98762 1.19682 0.91925 0.92124 0.88758 0.98337 1.20917 1.42688 0.95972 0.93980 0.90199 1.24980 0.94685 0.97834 0.95551 1.69891 1.45671 1.35678 1.02557 0.86961 0.79226 0.86961 0.77003 1.20358 1.21573 1.19033 1.62294 1.07987 1.54310 1.01459 1.21843 0.87457 0.94523 1.03018 1.22045 1.01398 1.01366 0.93597 1.21111 0.91167 0.98411 0.94853 1.58930 1.11075 1.53173 1.03977 1.22092 1.00268 0.94921 0.89491 1.22268 0.93642 0.86241 0.97886 1.86638 1.43254 1.15495 1.90673 1.21918 0.92884 0.93360 0.97850 1.21819 0.98085 0.97666 0.89480 0.92922 0.96023 0.93455 0.92710 0.88561 0.93437 0.91270 0.91615 0.91881 0.96580 0.90219 0.93826 0.93856 0.93607 0.78351 0.93204 0.91093 0.94261 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.61 37.16 0.32 -2.65 16 2 C 0.18 4.39 1.57 -68.86 -0.11 4.29 16 3 H 0.00 -0.02 5.07 -51.93 -0.26 -0.29 16 4 C -0.50 -13.86 7.19 -34.44 -0.25 -14.11 16 5 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 8 Si 0.87 21.89 26.71 -169.99 -4.54 17.35 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.27 -6.51 6.93 56.52 0.39 -6.11 16 12 N -0.54 -11.44 4.62 -229.09 -1.06 -12.49 16 13 C 0.06 1.20 4.99 -4.31 -0.02 1.18 16 14 C -0.14 -2.61 5.64 -27.06 -0.15 -2.76 16 15 C 0.07 1.11 4.84 -6.55 -0.03 1.08 16 16 N -0.55 -8.13 3.94 -239.70 -0.94 -9.07 16 17 C 0.06 0.70 5.35 -3.82 -0.02 0.68 16 18 C 0.08 0.80 7.08 37.16 0.26 1.07 16 19 O -0.56 -6.67 13.61 -35.23 -0.48 -7.15 16 20 C 0.07 1.02 5.37 -4.50 -0.02 1.00 16 21 C 0.06 1.06 4.19 -4.47 -0.02 1.04 16 22 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.02 0.42 6.99 -51.93 -0.36 0.06 16 24 H 0.05 1.08 7.94 -51.93 -0.41 0.66 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.10 2.26 6.30 -51.93 -0.33 1.93 16 27 H 0.05 0.90 6.51 -51.93 -0.34 0.56 16 28 H 0.07 1.41 6.71 -51.93 -0.35 1.06 16 29 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.06 0.86 5.86 -51.93 -0.30 0.56 16 31 H 0.02 0.24 7.59 -51.93 -0.39 -0.16 16 32 H 0.08 0.92 7.68 -51.93 -0.40 0.52 16 33 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.46 6.16 -51.93 -0.32 0.14 16 36 H 0.37 2.70 9.12 45.56 0.42 3.11 16 37 H 0.05 0.80 6.77 -51.93 -0.35 0.44 16 38 H 0.07 0.95 7.55 -51.93 -0.39 0.55 16 39 H 0.04 0.79 7.08 -51.93 -0.37 0.42 16 40 H 0.07 1.18 7.12 -51.93 -0.37 0.81 16 LS Contribution 297.61 15.07 4.48 4.48 Total: -1.00 -31.41 297.61 -7.69 -39.10 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.79 Total: 1.57 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.14 Total: -7.24 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -1.23 Total: -48.11 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.48 Total: -7.15 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.54 Total: 17.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.41 -7.69 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070914074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.435 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds