Wall clock time and date at job start Mon Mar 30 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47180 * 2 1 4 4 C 1.50698 * 109.46933 * 239.99726 * 2 1 3 5 5 H 1.08004 * 120.00073 * 274.29536 * 4 2 1 6 6 C 1.37881 * 119.99771 * 94.30426 * 4 2 1 7 7 N 1.31512 * 119.99722 * 181.61875 * 6 4 2 8 8 Si 1.86792 * 119.99985 * 1.61606 * 6 4 2 9 9 H 1.48500 * 109.47162 * 84.80270 * 8 6 4 10 10 H 1.48498 * 109.47235 * 204.80024 * 8 6 4 11 11 H 1.48498 * 109.47227 * 324.80234 * 8 6 4 12 12 N 1.46900 * 109.47001 * 119.99752 * 2 1 3 13 13 C 1.48064 * 111.00122 * 176.04424 * 12 2 1 14 14 C 1.50744 * 112.93467 * 84.35211 * 13 12 2 15 15 C 1.54518 * 108.94399 * 92.65146 * 14 13 12 16 16 N 1.40074 * 111.50937 * 283.98903 * 15 14 13 17 17 C 1.46904 * 111.00007 * 188.14797 * 16 15 14 18 18 C 1.52999 * 109.46840 * 66.04866 * 17 16 15 19 19 O 1.42895 * 109.47381 * 65.00109 * 18 17 16 20 20 C 1.47684 * 114.57024 * 61.45119 * 16 15 14 21 21 C 1.47743 * 111.00123 * 303.64844 * 12 2 1 22 22 H 1.09001 * 109.47161 * 186.05616 * 1 2 3 23 23 H 1.09006 * 109.47055 * 306.05363 * 1 2 3 24 24 H 1.08996 * 109.47123 * 66.05590 * 1 2 3 25 25 H 0.96998 * 119.99812 * 179.97438 * 7 6 4 26 26 H 1.09002 * 108.79356 * 323.46315 * 13 12 2 27 27 H 1.08997 * 108.70464 * 205.17753 * 13 12 2 28 28 H 1.08997 * 109.56340 * 332.81244 * 14 13 12 29 29 H 1.09008 * 109.64987 * 212.54080 * 14 13 12 30 30 H 1.09003 * 109.06925 * 163.46412 * 15 14 13 31 31 H 1.08996 * 109.01522 * 44.48047 * 15 14 13 32 32 H 1.08996 * 109.46822 * 186.04973 * 17 16 15 33 33 H 1.08998 * 109.47080 * 306.04970 * 17 16 15 34 34 H 1.09000 * 109.46683 * 185.00206 * 18 17 16 35 35 H 1.08996 * 109.47165 * 304.99916 * 18 17 16 36 36 H 0.96701 * 114.00437 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.73665 * 38.33891 * 20 16 15 38 38 H 1.09005 * 109.73826 * 159.03603 * 20 16 15 39 39 H 1.08999 * 108.99263 * 313.43442 * 21 12 2 40 40 H 1.09001 * 108.99303 * 72.26498 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1463 -1.7845 -1.2252 6 6 2.3466 0.0107 -2.3628 7 7 2.7545 -0.6122 -3.4468 8 14 2.1928 1.8722 -2.3572 9 1 3.4329 2.4697 -1.8002 10 1 1.9908 2.3564 -3.7464 11 1 1.0324 2.2706 -1.5206 12 7 2.0197 -0.6924 1.1995 13 6 3.4967 -0.7954 1.1870 14 6 4.1761 0.4387 1.7237 15 6 4.4342 0.2518 3.2357 16 7 3.2594 0.4140 3.9811 17 6 3.5475 0.4266 5.4216 18 6 4.3716 1.6688 5.7660 19 8 3.5896 2.8406 5.5267 20 6 2.1917 -0.5555 3.6634 21 6 1.4756 -0.0750 2.4265 22 1 -0.3633 -1.0219 0.1084 23 1 -0.3633 0.6049 0.8309 24 1 -0.3633 0.4171 -0.9392 25 1 2.9753 -0.1050 -4.2436 26 1 3.8285 -0.9611 0.1620 27 1 3.7926 -1.6510 1.7939 28 1 3.5343 1.3057 1.5675 29 1 5.1243 0.5889 1.2075 30 1 5.1693 0.9862 3.5649 31 1 4.8297 -0.7493 3.4073 32 1 2.6111 0.4456 5.9792 33 1 4.1105 -0.4681 5.6873 34 1 4.6607 1.6332 6.8163 35 1 5.2660 1.6955 5.1437 36 1 4.0499 3.6678 5.7244 37 1 2.6287 -1.5367 3.4780 38 1 1.4897 -0.6158 4.4951 39 1 1.5792 1.0077 2.3547 40 1 0.4180 -0.3251 2.5106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070914074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:04 Heat of formation + Delta-G solvation = -54.752087 kcal Electronic energy + Delta-G solvation = -18918.600009 eV Core-core repulsion = 16153.693044 eV Total energy + Delta-G solvation = -2764.906965 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77384 -38.31080 -36.87811 -34.65394 -33.47449 -32.28317 -30.23088 -27.80586 -27.10605 -26.12203 -23.19262 -22.52850 -21.43987 -20.18614 -18.98437 -18.31224 -17.57504 -16.98036 -16.43150 -16.17995 -15.82856 -15.29463 -14.94973 -14.58606 -14.33426 -14.15159 -13.89997 -13.50808 -13.29403 -13.17242 -12.91872 -12.75111 -12.58561 -12.55451 -12.27095 -11.92982 -11.76737 -11.71984 -11.49681 -11.23277 -10.99827 -10.76547 -10.73257 -9.07648 -8.79621 -8.28315 -6.28989 1.29129 1.31946 1.42289 2.32077 2.92221 3.02920 3.32950 3.50305 3.88997 4.05278 4.11685 4.27810 4.35461 4.41831 4.48074 4.52972 4.59304 4.62486 4.68209 4.72780 4.83290 4.87001 4.91136 4.98167 4.98329 5.02914 5.12662 5.21571 5.32647 5.40460 5.54542 5.70280 6.16269 6.19512 6.42738 6.55313 6.74165 6.84343 7.02047 7.36425 8.88569 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.006768 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.839214 B = 4136.288773 C = 4291.814634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.185 3.815 3 H -0.011 1.011 4 C -0.491 4.491 5 H 0.036 0.964 6 C 0.019 3.981 7 N -0.946 5.946 8 Si 0.930 3.070 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.252 1.252 12 N -0.546 5.546 13 C 0.066 3.934 14 C -0.140 4.140 15 C 0.084 3.916 16 N -0.562 5.562 17 C 0.057 3.943 18 C 0.077 3.923 19 O -0.585 6.585 20 C 0.073 3.927 21 C 0.062 3.938 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.265 0.735 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.024 0.976 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.389 0.611 37 H 0.044 0.956 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 5.211 20.085 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.078 3.922 3 H 0.007 0.993 4 C -0.530 4.530 5 H 0.054 0.946 6 C -0.179 4.179 7 N -0.586 5.586 8 Si 0.755 3.245 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.176 1.176 12 N -0.271 5.271 13 C -0.062 4.062 14 C -0.180 4.180 15 C -0.045 4.045 16 N -0.287 5.287 17 C -0.070 4.070 18 C -0.001 4.001 19 O -0.392 6.392 20 C -0.054 4.054 21 C -0.066 4.066 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.237 0.763 37 H 0.062 0.938 38 H 0.115 0.885 39 H 0.042 0.958 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.649 4.743 19.601 20.340 hybrid contribution 1.111 1.064 -0.513 1.622 sum 3.760 5.807 19.089 20.304 Atomic orbital electron populations 1.21868 0.96455 1.00819 0.99466 1.19537 0.93148 0.91103 0.88431 0.99306 1.21028 1.42045 0.94123 0.95802 0.94553 1.25706 0.94624 1.02440 0.95112 1.70026 1.47594 1.37578 1.03422 0.85994 0.79747 0.81372 0.77348 1.19828 1.21050 1.17607 1.62211 1.08639 1.54383 1.01885 1.21725 0.87236 0.96363 1.00851 1.21959 1.00666 0.98879 0.96462 1.20975 0.91802 0.99428 0.92309 1.58880 1.10854 1.52982 1.05999 1.22232 1.01120 0.96507 0.87142 1.22338 0.92975 0.85157 0.99583 1.86576 1.44644 1.16928 1.91045 1.21841 0.93509 0.92956 0.97115 1.21886 0.98912 0.96509 0.89259 0.92909 0.93224 0.94325 0.92590 0.92780 0.92051 0.93635 0.91212 0.90074 0.95800 0.89902 0.92082 0.91054 0.93509 0.76276 0.93753 0.88518 0.95796 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.61 71.98 0.62 -4.94 16 2 C 0.19 8.98 1.57 44.17 0.07 9.05 16 3 H -0.01 -0.53 5.07 -2.39 -0.01 -0.54 16 4 C -0.49 -28.32 7.19 25.60 0.18 -28.14 16 5 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 6 C 0.02 1.10 5.47 84.66 0.46 1.56 16 7 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 8 Si 0.93 45.56 26.71 68.60 1.83 47.39 16 9 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.25 -11.71 6.93 99.48 0.69 -11.02 16 12 N -0.55 -23.21 4.62 -878.71 -4.06 -27.26 16 13 C 0.07 2.70 4.99 85.35 0.43 3.12 16 14 C -0.14 -4.96 5.64 30.38 0.17 -4.79 16 15 C 0.08 2.31 4.84 88.05 0.43 2.74 16 16 N -0.56 -15.10 3.94 -912.27 -3.59 -18.70 16 17 C 0.06 1.12 5.35 86.30 0.46 1.58 16 18 C 0.08 1.31 7.08 71.98 0.51 1.82 16 19 O -0.58 -12.29 13.61 -148.98 -2.03 -14.32 16 20 C 0.07 2.03 5.37 85.43 0.46 2.49 16 21 C 0.06 2.17 4.19 85.42 0.36 2.53 16 22 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.05 1.86 6.99 -2.38 -0.02 1.84 16 24 H 0.04 1.71 7.94 -2.39 -0.02 1.69 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H 0.05 2.64 6.30 -2.39 -0.02 2.63 16 27 H 0.06 2.30 6.51 -2.39 -0.02 2.28 16 28 H 0.04 1.83 6.71 -2.39 -0.02 1.81 16 29 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.08 1.96 5.86 -2.39 -0.01 1.95 16 31 H 0.02 0.63 7.59 -2.39 -0.02 0.61 16 32 H 0.08 1.60 7.68 -2.39 -0.02 1.58 16 33 H 0.06 1.02 8.11 -2.39 -0.02 1.00 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.78 6.16 -2.39 -0.01 0.76 16 36 H 0.39 4.61 9.12 -74.06 -0.68 3.93 16 37 H 0.04 1.30 6.77 -2.39 -0.02 1.29 16 38 H 0.10 2.23 7.55 -2.38 -0.02 2.21 16 39 H 0.02 0.92 7.08 -2.39 -0.02 0.90 16 40 H 0.08 2.48 7.12 -2.39 -0.02 2.46 16 Total: -1.00 -69.12 297.61 -3.07 -72.19 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.33 Total: 12.70 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.15 Total: -12.97 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -7.35 Total: -105.00 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -2.03 Total: -14.32 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.83 Total: 47.39 kcal Total: -69.12 -3.07 -72.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070914074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.436 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds