Wall clock time and date at job start Mon Mar 30 2020 03:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46995 * 2 1 4 4 N 1.46498 * 109.47296 * 120.00229 * 2 1 3 5 5 C 1.36942 * 120.00066 * 294.90800 * 4 2 1 6 6 H 1.07999 * 119.99966 * 37.26830 * 5 4 2 7 7 C 1.38804 * 119.99626 * 217.00143 * 5 4 2 8 8 N 1.31618 * 120.00703 * 21.40348 * 7 5 4 9 9 Si 1.86807 * 119.99780 * 201.40982 * 7 5 4 10 10 H 1.48502 * 109.46839 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47232 * 119.99488 * 9 7 5 12 12 H 1.48501 * 109.47036 * 239.99727 * 9 7 5 13 13 C 1.46499 * 119.99982 * 114.90155 * 4 2 1 14 14 C 1.52994 * 109.47142 * 269.99978 * 13 4 2 15 15 N 1.46907 * 109.47235 * 179.97438 * 14 13 4 16 16 C 1.47016 * 111.00169 * 293.63919 * 15 14 13 17 17 C 1.53089 * 109.25720 * 177.60475 * 16 15 14 18 18 O 1.43009 * 109.26375 * 56.84712 * 17 16 15 19 19 C 1.43020 * 113.73820 * 301.33240 * 18 17 16 20 20 C 1.47006 * 111.00134 * 170.00057 * 15 14 13 21 21 H 1.08999 * 109.47297 * 303.30995 * 1 2 3 22 22 H 1.08999 * 109.47711 * 63.31634 * 1 2 3 23 23 H 1.09005 * 109.46918 * 183.31258 * 1 2 3 24 24 H 1.09003 * 109.46920 * 240.00050 * 2 1 3 25 25 H 1.08995 * 109.46629 * 181.59495 * 3 2 1 26 26 H 1.08993 * 109.47146 * 301.60327 * 3 2 1 27 27 H 1.09001 * 109.46652 * 61.59994 * 3 2 1 28 28 H 0.96998 * 120.00321 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47190 * 30.00250 * 13 4 2 30 30 H 1.09001 * 109.47012 * 150.00140 * 13 4 2 31 31 H 1.09001 * 109.47862 * 299.99713 * 14 13 4 32 32 H 1.08994 * 109.47245 * 60.00442 * 14 13 4 33 33 H 1.08997 * 109.50357 * 297.53787 * 16 15 14 34 34 H 1.09006 * 109.50582 * 57.67126 * 16 15 14 35 35 H 1.09010 * 109.50883 * 296.90976 * 17 16 15 36 36 H 1.08999 * 109.54426 * 176.80854 * 17 16 15 37 37 H 1.09003 * 109.50074 * 298.72865 * 19 18 17 38 38 H 1.08997 * 109.53929 * 178.62416 * 19 18 17 39 39 H 1.09003 * 109.51011 * 302.32726 * 20 15 14 40 40 H 1.08996 * 109.51056 * 62.41935 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7757 -0.1652 2.4372 6 1 0.8331 0.3199 2.6434 7 6 2.7392 -0.2610 3.4318 8 7 4.0004 -0.4557 3.1099 9 14 2.2457 -0.1137 5.2275 10 1 0.7793 0.1013 5.3218 11 1 2.6106 -1.3615 5.9452 12 1 2.9548 1.0369 5.8429 13 6 2.7662 -1.9435 1.0645 14 6 1.7930 -3.1237 1.0927 15 7 2.5429 -4.3800 0.9602 16 6 3.1686 -4.4827 -0.3662 17 6 3.9865 -5.7747 -0.4400 18 8 3.1360 -6.8885 -0.1549 19 6 2.5105 -6.8213 1.1295 20 6 1.6776 -5.5399 1.2192 21 1 -0.3634 0.5643 0.8588 22 1 -0.3634 0.4615 -0.9182 23 1 -0.3633 -1.0260 0.0594 24 1 1.8933 -0.5138 -0.8900 25 1 3.1295 1.4426 -0.0286 26 1 1.6534 1.9646 -0.8752 27 1 1.7002 1.9479 0.9040 28 1 4.6737 -0.5222 3.8050 29 1 3.3108 -1.9441 0.1204 30 1 3.4713 -2.0342 1.8908 31 1 1.2484 -3.1232 2.0369 32 1 1.0879 -3.0330 0.2665 33 1 2.3946 -4.4976 -1.1335 34 1 3.8245 -3.6270 -0.5265 35 1 4.7939 -5.7366 0.2915 36 1 4.4063 -5.8839 -1.4399 37 1 3.2750 -6.8137 1.9066 38 1 1.8624 -7.6871 1.2651 39 1 1.2451 -5.4560 2.2162 40 1 0.8793 -5.5713 0.4777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:35 Heat of formation + Delta-G solvation = -23.421910 kcal Electronic energy + Delta-G solvation = -18706.798708 eV Core-core repulsion = 15943.250321 eV Total energy + Delta-G solvation = -2763.548387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.26482 -36.75347 -35.19429 -32.35944 -31.05239 -30.40526 -28.11857 -26.17956 -25.67874 -23.78059 -23.60004 -20.95520 -19.99332 -19.47346 -16.46177 -16.04444 -15.89683 -15.12177 -14.85493 -14.62492 -14.34675 -14.06858 -13.69387 -13.35028 -12.54856 -12.49360 -12.41291 -11.94717 -11.54648 -11.32370 -11.29781 -11.18422 -11.07423 -10.75475 -10.64382 -10.44187 -10.33290 -10.18541 -9.93165 -9.58159 -9.48403 -9.40110 -8.42420 -7.91769 -6.51453 -5.72912 -3.31372 3.37411 3.46531 3.48200 3.95344 4.21373 4.53360 5.09345 5.24803 5.27589 5.34074 5.39975 5.45711 5.52774 5.73179 5.77087 5.94305 5.97653 6.01643 6.07810 6.14683 6.26228 6.32345 6.39319 6.44857 6.63314 6.71340 6.77984 6.79867 7.09200 7.22811 7.23168 7.33382 7.44800 7.49354 7.84632 7.92233 8.58533 9.25078 9.87953 10.46007 11.26522 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.007571 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.198442 B = 3697.341172 C = 4433.339885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.144 4.144 4 N -0.580 5.580 5 C -0.254 4.254 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.883 5.883 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.291 1.291 13 C 0.153 3.847 14 C 0.042 3.958 15 N -0.533 5.533 16 C 0.019 3.981 17 C 0.064 3.936 18 O -0.392 6.392 19 C 0.065 3.935 20 C 0.018 3.982 21 H 0.052 0.948 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.029 0.971 27 H 0.058 0.942 28 H 0.253 0.747 29 H 0.020 0.980 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.014 0.986 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 -7.838 -5.903 10.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 C -0.203 4.203 4 N -0.300 5.300 5 C -0.384 4.384 6 H 0.077 0.923 7 C -0.186 4.186 8 N -0.525 5.525 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.218 1.218 13 C 0.026 3.974 14 C -0.087 4.087 15 N -0.258 5.258 16 C -0.110 4.110 17 C -0.013 4.013 18 O -0.311 6.311 19 C -0.012 4.012 20 C -0.110 4.110 21 H 0.071 0.929 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.903 -7.973 -5.579 9.916 hybrid contribution -0.922 0.325 0.608 1.151 sum -2.825 -7.648 -4.971 9.549 Atomic orbital electron populations 1.22214 0.98991 1.00420 0.99742 1.20404 0.91908 0.92360 0.89782 1.22024 1.00801 0.97774 0.99721 1.43857 1.64550 1.20369 1.01259 1.18916 0.97499 1.34765 0.87201 0.92323 1.25136 0.94524 1.00371 0.98596 1.69986 0.99425 1.51396 1.31738 0.86415 0.78177 0.77313 0.85977 1.20237 1.21466 1.21766 1.20894 0.93224 0.82354 1.00911 1.22974 0.96849 0.89059 0.99807 1.62227 1.33217 1.02495 1.27899 1.22774 0.98777 0.99040 0.90392 1.22682 0.92402 0.85056 1.01175 1.87915 1.63326 1.44290 1.35563 1.22646 0.96111 0.96970 0.85488 1.22739 0.94955 0.91675 1.01661 0.92886 0.94629 0.93936 0.93969 0.93339 0.95227 0.92312 0.93693 0.96188 0.87854 0.91099 0.96769 0.94770 0.89101 0.92260 0.88929 0.92356 0.89039 0.89950 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.19 37.16 0.34 -2.55 16 2 C 0.16 3.40 3.37 -67.93 -0.23 3.18 16 3 C -0.14 -2.94 9.11 37.16 0.34 -2.60 16 4 N -0.58 -14.00 2.37 -165.67 -0.39 -14.39 16 5 C -0.25 -6.72 8.04 -15.06 -0.12 -6.85 16 6 H 0.06 1.57 7.14 -52.49 -0.37 1.20 16 7 C 0.01 0.38 4.96 -17.43 -0.09 0.30 16 8 N -0.88 -25.06 11.43 55.49 0.63 -24.43 16 9 Si 0.89 21.45 29.60 -169.99 -5.03 16.41 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.15 3.53 5.21 -4.05 -0.02 3.51 16 14 C 0.04 0.86 5.28 -3.82 -0.02 0.84 16 15 N -0.53 -9.49 4.73 -234.32 -1.11 -10.60 16 16 C 0.02 0.29 5.44 -3.71 -0.02 0.27 16 17 C 0.06 0.88 7.01 37.20 0.26 1.14 16 18 O -0.39 -5.82 10.83 -35.23 -0.38 -6.21 16 19 C 0.06 0.87 7.01 37.21 0.26 1.13 16 20 C 0.02 0.28 5.64 -3.71 -0.02 0.26 16 21 H 0.05 1.04 7.32 -51.93 -0.38 0.66 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.85 7.77 -51.93 -0.40 0.44 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.28 7.50 -51.93 -0.39 0.89 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 29 H 0.02 0.44 6.25 -51.93 -0.32 0.12 16 30 H 0.10 2.76 5.47 -51.93 -0.28 2.48 16 31 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 32 H 0.01 0.28 8.12 -51.93 -0.42 -0.14 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.47 6.38 -51.93 -0.33 1.14 16 35 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 312.35 15.07 4.71 4.71 Total: -1.00 -28.53 312.35 -8.00 -36.53 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.11 Total: -0.65 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 0.68 Total: -1.38 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.87 Total: -49.41 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.38 Total: -6.21 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.53 -8.00 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.105 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds