Wall clock time and date at job start Mon Mar 30 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46995 * 2 1 4 4 N 1.46498 * 109.47296 * 120.00229 * 2 1 3 5 5 C 1.36942 * 120.00066 * 294.90800 * 4 2 1 6 6 H 1.07999 * 119.99966 * 37.26830 * 5 4 2 7 7 C 1.38804 * 119.99626 * 217.00143 * 5 4 2 8 8 N 1.31618 * 120.00703 * 21.40348 * 7 5 4 9 9 Si 1.86807 * 119.99780 * 201.40982 * 7 5 4 10 10 H 1.48502 * 109.46839 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47232 * 119.99488 * 9 7 5 12 12 H 1.48501 * 109.47036 * 239.99727 * 9 7 5 13 13 C 1.46499 * 119.99982 * 114.90155 * 4 2 1 14 14 C 1.52994 * 109.47142 * 269.99978 * 13 4 2 15 15 N 1.46907 * 109.47235 * 179.97438 * 14 13 4 16 16 C 1.47016 * 111.00169 * 293.63919 * 15 14 13 17 17 C 1.53089 * 109.25720 * 177.60475 * 16 15 14 18 18 O 1.43009 * 109.26375 * 56.84712 * 17 16 15 19 19 C 1.43020 * 113.73820 * 301.33240 * 18 17 16 20 20 C 1.47006 * 111.00134 * 170.00057 * 15 14 13 21 21 H 1.08999 * 109.47297 * 303.30995 * 1 2 3 22 22 H 1.08999 * 109.47711 * 63.31634 * 1 2 3 23 23 H 1.09005 * 109.46918 * 183.31258 * 1 2 3 24 24 H 1.09003 * 109.46920 * 240.00050 * 2 1 3 25 25 H 1.08995 * 109.46629 * 181.59495 * 3 2 1 26 26 H 1.08993 * 109.47146 * 301.60327 * 3 2 1 27 27 H 1.09001 * 109.46652 * 61.59994 * 3 2 1 28 28 H 0.96998 * 120.00321 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47190 * 30.00250 * 13 4 2 30 30 H 1.09001 * 109.47012 * 150.00140 * 13 4 2 31 31 H 1.09001 * 109.47862 * 299.99713 * 14 13 4 32 32 H 1.08994 * 109.47245 * 60.00442 * 14 13 4 33 33 H 1.08997 * 109.50357 * 297.53787 * 16 15 14 34 34 H 1.09006 * 109.50582 * 57.67126 * 16 15 14 35 35 H 1.09010 * 109.50883 * 296.90976 * 17 16 15 36 36 H 1.08999 * 109.54426 * 176.80854 * 17 16 15 37 37 H 1.09003 * 109.50074 * 298.72865 * 19 18 17 38 38 H 1.08997 * 109.53929 * 178.62416 * 19 18 17 39 39 H 1.09003 * 109.51011 * 302.32726 * 20 15 14 40 40 H 1.08996 * 109.51056 * 62.41935 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7757 -0.1652 2.4372 6 1 0.8331 0.3199 2.6434 7 6 2.7392 -0.2610 3.4318 8 7 4.0004 -0.4557 3.1099 9 14 2.2457 -0.1137 5.2275 10 1 0.7793 0.1013 5.3218 11 1 2.6106 -1.3615 5.9452 12 1 2.9548 1.0369 5.8429 13 6 2.7662 -1.9435 1.0645 14 6 1.7930 -3.1237 1.0927 15 7 2.5429 -4.3800 0.9602 16 6 3.1686 -4.4827 -0.3662 17 6 3.9865 -5.7747 -0.4400 18 8 3.1360 -6.8885 -0.1549 19 6 2.5105 -6.8213 1.1295 20 6 1.6776 -5.5399 1.2192 21 1 -0.3634 0.5643 0.8588 22 1 -0.3634 0.4615 -0.9182 23 1 -0.3633 -1.0260 0.0594 24 1 1.8933 -0.5138 -0.8900 25 1 3.1295 1.4426 -0.0286 26 1 1.6534 1.9646 -0.8752 27 1 1.7002 1.9479 0.9040 28 1 4.6737 -0.5222 3.8050 29 1 3.3108 -1.9441 0.1204 30 1 3.4713 -2.0342 1.8908 31 1 1.2484 -3.1232 2.0369 32 1 1.0879 -3.0330 0.2665 33 1 2.3946 -4.4976 -1.1335 34 1 3.8245 -3.6270 -0.5265 35 1 4.7939 -5.7366 0.2915 36 1 4.4063 -5.8839 -1.4399 37 1 3.2750 -6.8137 1.9066 38 1 1.8624 -7.6871 1.2651 39 1 1.2451 -5.4560 2.2162 40 1 0.8793 -5.5713 0.4777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080216364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:34 Heat of formation + Delta-G solvation = -41.739132 kcal Electronic energy + Delta-G solvation = -18707.593002 eV Core-core repulsion = 15943.250321 eV Total energy + Delta-G solvation = -2764.342681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50228 -38.46535 -36.59827 -34.25946 -32.38098 -31.98947 -29.75259 -27.76737 -27.32624 -25.37463 -24.96202 -22.53031 -21.38846 -21.21250 -18.23735 -17.42642 -17.13798 -16.84708 -16.17626 -16.00311 -15.95228 -15.63376 -15.33119 -14.84186 -14.20167 -14.06454 -13.99480 -13.36541 -13.11079 -12.97744 -12.91349 -12.81221 -12.59717 -12.34354 -12.26178 -12.14385 -11.91740 -11.76747 -11.59530 -11.30518 -11.22080 -10.65928 -10.45317 -9.31370 -8.49369 -7.75768 -5.38007 1.44226 1.48467 1.56733 2.51496 2.78016 2.98390 3.31818 3.75036 3.94504 4.06994 4.09363 4.20549 4.28435 4.31518 4.44464 4.55852 4.60449 4.68132 4.71691 4.74049 4.82388 4.85590 4.93071 4.94414 5.02180 5.09793 5.16761 5.17066 5.36706 5.58903 5.65586 5.72906 5.85613 6.07618 6.12339 6.19100 6.54627 7.23968 7.94001 8.46143 9.19538 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.007571 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.198442 B = 3697.341172 C = 4433.339885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.153 3.847 3 C -0.135 4.135 4 N -0.594 5.594 5 C -0.250 4.250 6 H 0.054 0.946 7 C -0.034 4.034 8 N -0.913 5.913 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.292 1.292 12 H -0.293 1.293 13 C 0.159 3.841 14 C 0.064 3.936 15 N -0.549 5.549 16 C 0.020 3.980 17 C 0.067 3.933 18 O -0.400 6.400 19 C 0.067 3.933 20 C 0.018 3.982 21 H 0.038 0.962 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.248 0.752 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -8.671 -6.858 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.047 3.953 3 C -0.194 4.194 4 N -0.316 5.316 5 C -0.381 4.381 6 H 0.071 0.929 7 C -0.231 4.231 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.219 1.219 12 H -0.220 1.220 13 C 0.033 3.967 14 C -0.066 4.066 15 N -0.275 5.275 16 C -0.108 4.108 17 C -0.009 4.009 18 O -0.319 6.319 19 C -0.010 4.010 20 C -0.110 4.110 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.907 -8.813 -6.550 11.359 hybrid contribution -0.625 0.588 0.827 1.192 sum -3.533 -8.225 -5.723 10.624 Atomic orbital electron populations 1.22057 0.96881 1.00393 1.00798 1.20646 0.93445 0.92379 0.88873 1.21923 0.99337 0.97707 1.00399 1.44083 1.64649 1.21173 1.01690 1.19034 0.96944 1.33696 0.88388 0.92889 1.25730 0.94541 1.01112 1.01708 1.70111 1.00148 1.53174 1.32286 0.85541 0.78071 0.76718 0.82101 1.19421 1.21877 1.22011 1.20699 0.93257 0.83337 0.99435 1.22516 0.95855 0.89464 0.98716 1.62163 1.33620 1.02327 1.29423 1.22801 0.98751 0.99990 0.89293 1.22747 0.91747 0.83710 1.02727 1.87911 1.63440 1.44420 1.36131 1.22759 0.96220 0.96961 0.85016 1.22820 0.95017 0.91417 1.01784 0.94266 0.91353 0.94201 0.92868 0.95542 0.91506 0.94364 0.94233 0.95898 0.91432 0.93205 0.96452 0.94584 0.90048 0.92526 0.86216 0.92486 0.86076 0.89801 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 9.19 71.98 0.66 -4.38 16 2 C 0.15 6.22 3.37 44.99 0.15 6.37 16 3 C -0.13 -5.36 9.11 71.98 0.66 -4.71 16 4 N -0.59 -28.84 2.37 -678.05 -1.61 -30.45 16 5 C -0.25 -13.36 8.04 84.03 0.68 -12.69 16 6 H 0.05 2.86 7.14 -2.91 -0.02 2.84 16 7 C -0.03 -1.84 4.96 84.86 0.42 -1.42 16 8 N -0.91 -53.11 11.43 21.65 0.25 -52.87 16 9 Si 0.95 44.73 29.60 68.60 2.03 46.76 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 13 C 0.16 7.46 5.21 86.38 0.45 7.91 16 14 C 0.06 2.60 5.28 86.30 0.46 3.05 16 15 N -0.55 -19.27 4.73 -895.24 -4.23 -23.50 16 16 C 0.02 0.60 5.44 86.31 0.47 1.07 16 17 C 0.07 1.73 7.01 72.01 0.50 2.24 16 18 O -0.40 -10.91 10.83 -148.98 -1.61 -12.53 16 19 C 0.07 1.65 7.01 72.02 0.50 2.16 16 20 C 0.02 0.52 5.64 86.32 0.49 1.01 16 21 H 0.04 1.48 7.32 -2.39 -0.02 1.46 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 23 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.05 2.04 7.77 -2.39 -0.02 2.03 16 25 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.04 1.65 7.50 -2.39 -0.02 1.63 16 28 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.02 1.03 6.25 -2.39 -0.01 1.01 16 30 H 0.07 3.72 5.47 -2.39 -0.01 3.71 16 31 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 32 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 2.61 6.38 -2.38 -0.02 2.59 16 35 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.38 8.09 -2.39 -0.02 2.36 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -61.13 312.35 1.25 -59.89 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.98 Total: 12.08 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 5.44 Total: 0.61 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -5.59 Total: -106.81 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.61 Total: -12.53 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -61.13 1.25 -59.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.149 kcal (2) G-P(sol) polarization free energy of solvation -61.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds